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3F8

Alias: 3F 8 3F83F-8
Cat No.:V9506 Purity: ≥98%
3F8 is a potent and specific GSK-3β inhibitor that can serve as a new tool and candidate active molecule for potential research into GSK3-related diseases.
3F8
3F8 Chemical Structure CAS No.: 159109-11-2
Product category: New1
This product is for research use only, not for human use. We do not sell to patients.
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Product Description
3F8 is a potent and specific GSK-3β inhibitor that can serve as a new tool and candidate active molecule for potential research into GSK3-related diseases.
Biological Activity I Assay Protocols (From Reference)
Targets
3F8 targets glycogen synthase kinase 3 beta (GSK3β). It is an ATP-competitive inhibitor of GSK3β. In the presence of 10 μM ATP, the IC₅₀ of 3F8 is 34 nM; in the presence of 100 μM ATP, the IC₅₀ increases to 304 nM. In a panel of 22 representative kinases, 5 μM 3F8 inhibited GSK3β activity by 91%, demonstrating selectivity. [1]
ln Vitro
In a β-catenin-TCF reporter assay using 293T cells, treatment with 4 μM 3F8 increased luciferase activity approximately 15-fold compared to control, indicating that 3F8 upregulates the Wnt pathway. [1]
Computational docking analysis showed that 3F8 fits into the ATP pocket of human GSK3β with a predicted binding free energy of -9.9 kcal/mol, suggesting it is an ATP-competitive inhibitor. [1]
In an in vitro GSK3β activity assay, 3F8 inhibited human GSK3β in an ATP-competitive manner. The IC₅₀ was 34 nM at 10 μM ATP and 304 nM at 100 μM ATP. Under the same conditions, 3F8 had a lower IC₅₀ than SB216763, a commonly used GSK3 inhibitor. [1]
In a selectivity screen against 22 representative mammalian kinases, 5 μM 3F8 inhibited GSK3β activity by 91%, while showing much lower inhibition against other kinases, confirming its selectivity for GSK3. [1]
ln Vivo
In zebrafish embryos, 3F8 treatment induces a dose-dependent “no-eyes” phenotype (loss of eyes and forebrain), resembling typical Wnt overexpression. The effective concentration (Cₑ) to cause the no-eyes phenotype is 7.5 μM. The ratio Cₑ/IC₅₀ for 3F8 is 221, which is lower than that of other tested GSK3 inhibitors (SB216763, GSK-3b inhibitor IX, GSK-3b inhibitor XII, and GSK-3 inhibitor XV, TWS119), implying that 3F8 is more efficient in vivo, likely due to better absorption and/or stability. [1]
Using 3F8, the timing of forebrain determination was studied: embryos treated with 3.75 μM 3F8 at the 2-cell stage all showed the no-eyes phenotype; the required concentration gradually increased to 11.25 μM until the shield stage; after gastrulation (2-somite stage), 3F8 no longer affected brain development even at 75 μM. [1]
When 3F8 was removed at 2 days post-fertilization by washing with fish water, 22% of “no-eyes” embryos developed a forebrain and eyes by 5 dpf, indicating that committed forebrain progenitor cells remain and can regenerate. [1]
Whole mount in situ hybridization showed that expression of forebrain markers pax2a and dlx2a was sensitive to 3F8 treatment; at doses that ablate both genes, no forebrain regeneration was observed. [1]
Enzyme Assay
GSK3β activity assay (ELISA-based): Recombinant human GSK3β was added to reactions with or without inhibitors (3F8, its analogs, or SB216763). Reaction buffer contained 40 mM HEPES (pH 7.2), 5 mM MgCl₂, 5 mM EDTA, 50 μg/mL heparin, and ATP at either 10, 30, or 100 μM. The substrate was recombinant human TAU-441. Control reactions were set up without ATP, without TAU-441, or without GSK3β. Reaction mixtures were incubated at 30°C for 1 hour. The amount of phosphorylated TAU-441 was measured using a human Tau [pS396] ELISA kit. Absorbance at 450 nm was read. Activity curves were fitted using a four-parameter algorithm. [1]
Kinase selectivity profiling: A panel of 22 representative mammalian kinases was tested for inhibition by 3F8 at a concentration of 5 μM in 1% DMSO using a commercial kinase profiling service. [1]
Cell Assay
β-catenin-TCF reporter assay (superTOPflash): 293T cells grown in 24-well plates were transfected with 200 ng of superTOPflash reporter plasmid and 20 ng of RLTK (Renilla luciferase control) plasmid. Twenty-four hours after transfection, 3F8 was added to cells at indicated concentrations for 18 hours. Cell extracts were then prepared and sequentially assayed for firefly and Renilla luciferase activities using a dual-luciferase reporter assay system. Firefly luciferase readings were normalized against Renilla luciferase. [1]
Animal Protocol
Zebrafish embryo chemical screening: Wild-type AB strain zebrafish embryos were arrayed into 96-well plates (6 embryos per well) in 200 μL fresh fish water containing 1× antibiotic-antimycotic solution. 3F8 was added to embryos at approximately 10 μM using automated robots before the shield stage. Embryos were allowed to grow in the compound solution for up to 7 days. The “no-eyes” phenotype was examined visually under a dissection microscope. Stock solutions of 3F8 were made in DMSO, and working solutions were diluted from DMSO stocks into fish water. [1]
Forebrain determination timing study: Zebrafish embryos were treated with various concentrations of 3F8 (e.g., 3.75 μM, 11.25 μM, up to 75 μM) at different developmental stages (2-cell, shield stage, 2-somite stage). Treated embryos were observed for brain and eye formation. [1]
Regeneration experiment: After 2 days of 3F8 treatment at a concentration that induced the no-eyes phenotype, embryos were washed with fish water to remove the compound and then allowed to develop until 5 days post-fertilization. The percentage of embryos that regenerated forebrain and eyes was quantified. [1]
Toxicity/Toxicokinetics
In zebrafish embryos, 3F8 treatment at concentrations that induce the no-eyes phenotype caused mild heart edema and hypertrophy but otherwise normal body shape and appearance compared to DMSO-treated controls. Treatment of transgenic zebrafish with GFP-labeled internal organs (blood vessels, liver, pancreas) showed no visible necrosis or abnormality, suggesting that 3F8 does not have obvious non-specific developmental toxicity in zebrafish. [1]
References

[1]. Characterization and development of novel small-molecules inhibiting GSK3 and activating Wnt signaling. Mol Biosyst. 2009 Nov;5(11):1356-60.

Additional Infomation
3F8 (5-ethyl-7,8-dimethoxy-1H-pyrrolo[3,4-c]-isoquinoline-1,3-(2H)-dione) is a novel small-molecule GSK3 inhibitor identified from a screen of a 4000-compound chemical library (DIVERSet™) using the zebrafish “no-eyes” phenotype as an assay. This phenotype reflects ectopic activation of the Wnt signaling pathway. 3F8 is more potent than SB216763, a commonly used GSK3 inhibitor, under the same in vitro assay conditions. A derivative, 3F8.1 (7,8-dimethoxy-5-propyl-1H-pyrrolo[3,4-c]isoquinoline-1,3-(2H)-dione), showed similar activity. Based on the structure of 3F8, new analogs (6a and 6b) were synthesized; they inhibited GSK3β with IC₅₀ values of 270 nM and 92 nM, respectively. 3F8 has a Cₑ/IC₅₀ ratio of 221, indicating good in vivo efficiency. The compound can be used as a tool for studying GSK3 activity and Wnt signaling, and as a potential lead for drug discovery targeting GSK3-related diseases including type II diabetes, Alzheimer‘s disease, and cancers. [1]
These protocols are for reference only. InvivoChem does not independently validate these methods.
Physicochemical Properties
Molecular Formula
C15H14N2O4
Molecular Weight
286.29
Exact Mass
286.095
CAS #
159109-11-2
PubChem CID
23829003
Appearance
Typically exists as solid at room temperature
LogP
1.708
Hydrogen Bond Donor Count
1
Hydrogen Bond Acceptor Count
5
Rotatable Bond Count
3
Heavy Atom Count
21
Complexity
441
Defined Atom Stereocenter Count
0
SMILES
C(C1C2=C(C=C(OC)C(OC)=C2)C2C(=O)NC(=O)C=2N=1)C
InChi Key
ULVWJFBHQIXEPE-UHFFFAOYSA-N
InChi Code
InChI=1S/C15H14N2O4/c1-4-9-7-5-10(20-2)11(21-3)6-8(7)12-13(16-9)15(19)17-14(12)18/h5-6H,4H2,1-3H3,(H,17,18,19)
Chemical Name
5-Ethyl-7,8-dimethoxy-pyrrolo[3,4-c]isoquinoline-1,3-dione
Synonyms
3F 8 3F83F-8
HS Tariff Code
2934.99.9001
Storage

Powder      -20°C    3 years

                     4°C     2 years

In solvent   -80°C    6 months

                  -20°C    1 month

Shipping Condition
Room temperature (This product is stable at ambient temperature for a few days during ordinary shipping and time spent in Customs)
Solubility Data
Solubility (In Vitro)
May dissolve in DMSO (in most cases), if not, try other solvents such as H2O, Ethanol, or DMF with a minute amount of products to avoid loss of samples
Solubility (In Vivo)
Note: Listed below are some common formulations that may be used to formulate products with low water solubility (e.g. < 1 mg/mL), you may test these formulations using a minute amount of products to avoid loss of samples.

Injection Formulations
(e.g. IP/IV/IM/SC)
Injection Formulation 1: DMSO : Tween 80: Saline = 10 : 5 : 85 (i.e. 100 μL DMSO stock solution 50 μL Tween 80 850 μL Saline)
*Preparation of saline: Dissolve 0.9 g of sodium chloride in 100 mL ddH ₂ O to obtain a clear solution.
Injection Formulation 2: DMSO : PEG300Tween 80 : Saline = 10 : 40 : 5 : 45 (i.e. 100 μL DMSO 400 μLPEG300 50 μL Tween 80 450 μL Saline)
Injection Formulation 3: DMSO : Corn oil = 10 : 90 (i.e. 100 μL DMSO 900 μL Corn oil)
Example: Take the Injection Formulation 3 (DMSO : Corn oil = 10 : 90) as an example, if 1 mL of 2.5 mg/mL working solution is to be prepared, you can take 100 μL 25 mg/mL DMSO stock solution and add to 900 μL corn oil, mix well to obtain a clear or suspension solution (2.5 mg/mL, ready for use in animals).
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Injection Formulation 4: DMSO : 20% SBE-β-CD in saline = 10 : 90 [i.e. 100 μL DMSO 900 μL (20% SBE-β-CD in saline)]
*Preparation of 20% SBE-β-CD in Saline (4°C,1 week): Dissolve 2 g SBE-β-CD in 10 mL saline to obtain a clear solution.
Injection Formulation 5: 2-Hydroxypropyl-β-cyclodextrin : Saline = 50 : 50 (i.e. 500 μL 2-Hydroxypropyl-β-cyclodextrin 500 μL Saline)
Injection Formulation 6: DMSO : PEG300 : castor oil : Saline = 5 : 10 : 20 : 65 (i.e. 50 μL DMSO 100 μLPEG300 200 μL castor oil 650 μL Saline)
Injection Formulation 7: Ethanol : Cremophor : Saline = 10: 10 : 80 (i.e. 100 μL Ethanol 100 μL Cremophor 800 μL Saline)
Injection Formulation 8: Dissolve in Cremophor/Ethanol (50 : 50), then diluted by Saline
Injection Formulation 9: EtOH : Corn oil = 10 : 90 (i.e. 100 μL EtOH 900 μL Corn oil)
Injection Formulation 10: EtOH : PEG300Tween 80 : Saline = 10 : 40 : 5 : 45 (i.e. 100 μL EtOH 400 μLPEG300 50 μL Tween 80 450 μL Saline)


Oral Formulations
Oral Formulation 1: Suspend in 0.5% CMC Na (carboxymethylcellulose sodium)
Oral Formulation 2: Suspend in 0.5% Carboxymethyl cellulose
Example: Take the Oral Formulation 1 (Suspend in 0.5% CMC Na) as an example, if 100 mL of 2.5 mg/mL working solution is to be prepared, you can first prepare 0.5% CMC Na solution by measuring 0.5 g CMC Na and dissolve it in 100 mL ddH2O to obtain a clear solution; then add 250 mg of the product to 100 mL 0.5% CMC Na solution, to make the suspension solution (2.5 mg/mL, ready for use in animals).
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Oral Formulation 3: Dissolved in PEG400
Oral Formulation 4: Suspend in 0.2% Carboxymethyl cellulose
Oral Formulation 5: Dissolve in 0.25% Tween 80 and 0.5% Carboxymethyl cellulose
Oral Formulation 6: Mixing with food powders


Note: Please be aware that the above formulations are for reference only. InvivoChem strongly recommends customers to read literature methods/protocols carefully before determining which formulation you should use for in vivo studies, as different compounds have different solubility properties and have to be formulated differently.

 (Please use freshly prepared in vivo formulations for optimal results.)
Preparing Stock Solutions 1 mg 5 mg 10 mg
1 mM 3.4930 mL 17.4648 mL 34.9296 mL
5 mM 0.6986 mL 3.4930 mL 6.9859 mL
10 mM 0.3493 mL 1.7465 mL 3.4930 mL

*Note: Please select an appropriate solvent for the preparation of stock solution based on your experiment needs. For most products, DMSO can be used for preparing stock solutions (e.g. 5 mM, 10 mM, or 20 mM concentration); some products with high aqueous solubility may be dissolved in water directly. Solubility information is available at the above Solubility Data section. Once the stock solution is prepared, aliquot it to routine usage volumes and store at -20°C or -80°C. Avoid repeated freeze and thaw cycles.

Calculator

Molarity Calculator allows you to calculate the mass, volume, and/or concentration required for a solution, as detailed below:

  • Calculate the Mass of a compound required to prepare a solution of known volume and concentration
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An example of molarity calculation using the molarity calculator is shown below:
What is the mass of compound required to make a 10 mM stock solution in 5 ml of DMSO given that the molecular weight of the compound is 350.26 g/mol?
  • Enter 350.26 in the Molecular Weight (MW) box
  • Enter 10 in the Concentration box and choose the correct unit (mM)
  • Enter 5 in the Volume box and choose the correct unit (mL)
  • Click the “Calculate” button
  • The answer of 17.513 mg appears in the Mass box. In a similar way, you may calculate the volume and concentration.

Dilution Calculator allows you to calculate how to dilute a stock solution of known concentrations. For example, you may Enter C1, C2 & V2 to calculate V1, as detailed below:

What volume of a given 10 mM stock solution is required to make 25 ml of a 25 μM solution?
Using the equation C1V1 = C2V2, where C1=10 mM, C2=25 μM, V2=25 ml and V1 is the unknown:
  • Enter 10 into the Concentration (Start) box and choose the correct unit (mM)
  • Enter 25 into the Concentration (End) box and select the correct unit (mM)
  • Enter 25 into the Volume (End) box and choose the correct unit (mL)
  • Click the “Calculate” button
  • The answer of 62.5 μL (0.1 ml) appears in the Volume (Start) box
g/mol

Molecular Weight Calculator allows you to calculate the molar mass and elemental composition of a compound, as detailed below:

Note: Chemical formula is case sensitive: C12H18N3O4  c12h18n3o4
Instructions to calculate molar mass (molecular weight) of a chemical compound:
  • To calculate molar mass of a chemical compound, please enter the chemical/molecular formula and click the “Calculate’ button.
Definitions of molecular mass, molecular weight, molar mass and molar weight:
  • Molecular mass (or molecular weight) is the mass of one molecule of a substance and is expressed in the unified atomic mass units (u). (1 u is equal to 1/12 the mass of one atom of carbon-12)
  • Molar mass (molar weight) is the mass of one mole of a substance and is expressed in g/mol.
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Reconstitution Calculator allows you to calculate the volume of solvent required to reconstitute your vial.

  • Enter the mass of the reagent and the desired reconstitution concentration as well as the correct units
  • Click the “Calculate” button
  • The answer appears in the Volume (to add to vial) box
In vivo Formulation Calculator (Clear solution)
Step 1: Enter information below (Recommended: An additional animal to make allowance for loss during the experiment)
Step 2: Enter in vivo formulation (This is only a calculator, not the exact formulation for a specific product. Please contact us first if there is no in vivo formulation in the solubility section.)
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Calculation results

Working concentration mg/mL;

Method for preparing DMSO stock solution mg drug pre-dissolved in μL DMSO (stock solution concentration mg/mL). Please contact us first if the concentration exceeds the DMSO solubility of the batch of drug.

Method for preparing in vivo formulation:Take μL DMSO stock solution, next add μL PEG300, mix and clarify, next addμL Tween 80, mix and clarify, next add μL ddH2O,mix and clarify.

(1) Please be sure that the solution is clear before the addition of next solvent. Dissolution methods like vortex, ultrasound or warming and heat may be used to aid dissolving.
             (2) Be sure to add the solvent(s) in order.

Clinical Trial Information
NCT Number Recruitment interventions Conditions Sponsor/Collaborators Start Date Phases
NCT01183416 COMPLETEDWITH RESULTS Drug: 3F8 monoclonal antibody and 13-cis-Retinoic Acid Neuroblastoma Memorial Sloan Kettering Cancer Center 2010-08 Phase 2
NCT01183429 COMPLETEDWITH RESULTS Drug: 3F8 and 13-cis-retinoic acid Neuroblastoma Memorial Sloan Kettering Cancer Center 2010-08-12 Phase 2
NCT01183884 TERMINATEDWITH RESULTS Biological: 3F8/GM-CSF Immunotherapy Plus
13-Cis-Retinoic Acid
Neuroblastoma Memorial Sloan Kettering Cancer Center 2010-08 Phase 2
NCT01183897 COMPLETEDWITH RESULTS Biological: 3F8/GM-CSF Immunotherapy Plus
13-Cis-Retinoic
Neuroblastoma Memorial Sloan Kettering Cancer Center 2010-08-12 Phase 2
NCT00450307 COMPLETED Biological: monoclonal antibody 3F8
Biological: sargramostim
Neuroblastoma Memorial Sloan Kettering Cancer Center 2005-06 Phase 1
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