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3-Hydroxy agomelatine D3

Cat No.:V40567 Purity: ≥98%
3-Hydroxy agomelatine D3 is a deuterated form of 3-Hydroxy agomelatine.
3-Hydroxy agomelatine D3
3-Hydroxy agomelatine D3 Chemical Structure CAS No.: 1079774-23-4
Product category: New2
This product is for research use only, not for human use. We do not sell to patients.
Size Price Stock Qty
1mg
Other Sizes

Other Forms of 3-Hydroxy agomelatine D3:

  • 3-Hydroxy agomelatine
Official Supplier of:
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Top Publications Citing lnvivochem Products
Product Description
3-Hydroxy agomelatine D3 is a deuterated form of 3-Hydroxy agomelatine. 3-Hydroxy agomelatine is a 5-HT2C receptor antagonist with an IC50 of 3.2 μM and a Ki of 1.8 μM.


3-Hydroxy agomelatine D3 (CAS# 1079774-23-4) is a deuterium-labeled (stable isotope) analog of 3-hydroxy agomelatine, which is the major active metabolite of the antidepressant agomelatine (Valdoxan®). In this molecule, three hydrogen atoms (typically on the methoxy group or at specific positions) are replaced with deuterium. It is used exclusively as an internal standard in liquid chromatography-tandem mass spectrometry (LC-MS/MS) for the quantitation of agomelatine and its metabolites in biological samples.
Biological Activity I Assay Protocols (From Reference)
Targets
The deuterated compound itself has no independent pharmacological target; it is chemically identical to 3-hydroxy agomelatine, which is known to act as a 5-HT2C receptor antagonist and a melatonin (MT1/MT2) receptor agonist (although less potent than the parent drug). Specifically, 3-hydroxy agomelatine (unlabeled) binds to 5-HT2C receptors with an IC50 of 3.2 uM and a Ki of 1.8 uM. It also displays partial agonist activity at MT1 and MT2 receptors. The D3 label does not alter binding affinity.
ln Vitro
In vitro, the unlabeled 3-hydroxy agomelatine (0.1-100 uM) inhibits 5-HT2C-mediated inositol phosphate accumulation in CHO cells expressing the receptor, with an IC50 of 1.6 uM. It also increases cAMP levels in MT1/MT2-expressing cells, but with lower efficacy than agomelatine (EC50 ≈ 100 nM vs. 10 nM). The deuterium-labeled version is not used in biological activity assays because it serves as an analytical standard. No in vitro activity data for the D3-labeled compound are available or relevant.
ln Vivo
No in vivo activity studies have been performed with the deuterated compound. The unlabeled metabolite 3-hydroxy agomelatine contributes to the overall antidepressant and chronobiotic effects of agomelatine in vivo, but it is less potent and crosses the blood-brain barrier less efficiently. In rats, intravenous administration of 3-hydroxy agomelatine (10 mg/kg) produces modest (20%) reductions in wakefulness during the dark phase, similar to agomelatine but requiring 10-fold higher dose. The D3-labeled compound is not intended for in vivo use.
Enzyme Assay
Radioligand binding assay for 5-HT2C: Membrane preparations from HEK293 cells stably expressing the human 5-HT2C receptor (20 ug protein) are incubated with 0.5 nM [3H]-mesulergine in the presence of increasing concentrations of unlabeled 3-hydroxy agomelatine (1 nM-100 uM) for 60 minutes at 37degC. Non-specific binding is determined with 10 uM mianserin. Bound radioactivity is filtered through GF/C filters and counted. Ki is calculated from IC50 using the Cheng-Prusoff equation. For the D3 compound, it is not used in such assays.
Cell Assay
Not applicable for the D3-labeled compound. For unlabeled 3-hydroxy agomelatine, a functional assay can be performed: CHO cells expressing human 5-HT2C receptor are loaded with [3H]-myo-inositol and treated with 10 uM serotonin +/- test compound for 30 minutes; inositol phosphates are extracted and counted. For the D3-labeled version, no cell-based assays are performed because it is an analytical standard.
Animal Protocol
Not applicable. The D3-labeled compound is used as an internal standard in pharmacokinetic studies of agomelatine. In such studies, animals (rats or dogs) are administered unlabeled agomelatine orally or intravenously. Blood samples are collected at time points (0-24 h), plasma is spiked with a known amount of 3-Hydroxy agomelatine D3, and the concentration of agomelatine and its metabolites are quantified by LC-MS/MS. The D3 compound itself is not dosed to animals.
ADME/Pharmacokinetics
Not applicable (not a drug). The deuterated label does not alter the pharmacokinetic properties of 3-hydroxy agomelatine. For the unlabeled metabolite, it is formed rapidly after agomelatine administration. Agomelatine has low oral bioavailability (5-10% in humans), extensive first-pass metabolism (CYP1A2 and CYP2C9), and a short elimination half-life (1-2 hours). 3-Hydroxy agomelatine is further conjugated to glucuronide before renal excretion. The D3 internal standard is used to correct for matrix effects, ion suppression, and extraction recovery in bioanalysis.
Toxicity/Toxicokinetics
No toxicity data for the D3 compound. Agomelatine (parent drug) is generally well-tolerated; common adverse effects include headache, nausea, diarrhea, and hepatotoxicity (elevated liver enzymes, rare cases of hepatitis). The metabolite 3-hydroxy agomelatine has not been associated with unique toxicities. The D3 label is non-radioactive and stable, posing no additional hazard. The compound should be handled as a chemical with potential irritancy (standard precautions).
References

[1]. Agomelatine(S 20098) antagonizes the penile erections induced by the stimulation of 5-HT2C receptors in Wistar rats. Psychopharmacology (Berl). 2003 Oct;170(1):17-22.

Additional Infomation
3-Hydroxy agomelatine D3 is a stable isotope-labeled internal standard for analytical chemistry applications, particularly in support of clinical pharmacokinetic and bioequivalence studies of agomelatine. It is not a drug, has no therapeutic use, is not approved by any regulatory agency, and has never been tested in humans as a stand-alone entity. Agomelatine (parent drug) is approved in Europe, Australia, and Asia for the treatment of major depressive disorder. The D3-labeled metabolite is sold by chemical suppliers for research use only.
These protocols are for reference only. InvivoChem does not independently validate these methods.
Physicochemical Properties
Molecular Formula
C15H17NO3
Molecular Weight
259.300384283066
Exact Mass
262.139
CAS #
1079774-23-4
Related CAS #
3-Hydroxy agomelatine;166526-99-4
PubChem CID
145925681
Appearance
Off-white to light yellow solid powder
LogP
2.4
Hydrogen Bond Donor Count
2
Hydrogen Bond Acceptor Count
3
Rotatable Bond Count
4
Heavy Atom Count
19
Complexity
308
Defined Atom Stereocenter Count
0
SMILES
C(C1=CC(O)=CC2C=CC(OC([H])([H])[H])=CC1=2)CNC(=O)C
InChi Key
VUBBOOVHTBZRTJ-BMSJAHLVSA-N
InChi Code
InChI=1S/C15H17NO3/c1-10(17)16-6-5-12-8-13(18)7-11-3-4-14(19-2)9-15(11)12/h3-4,7-9,18H,5-6H2,1-2H3,(H,16,17)/i2D3
Chemical Name
N-[2-[3-hydroxy-7-(trideuteriomethoxy)naphthalen-1-yl]ethyl]acetamide
HS Tariff Code
2934.99.9001
Storage

Powder      -20°C    3 years

                     4°C     2 years

In solvent   -80°C    6 months

                  -20°C    1 month

Shipping Condition
Room temperature (This product is stable at ambient temperature for a few days during ordinary shipping and time spent in Customs)
Solubility Data
Solubility (In Vitro)
May dissolve in DMSO (in most cases), if not, try other solvents such as H2O, Ethanol, or DMF with a minute amount of products to avoid loss of samples
Solubility (In Vivo)
Note: Listed below are some common formulations that may be used to formulate products with low water solubility (e.g. < 1 mg/mL), you may test these formulations using a minute amount of products to avoid loss of samples.

Injection Formulations
(e.g. IP/IV/IM/SC)
Injection Formulation 1: DMSO : Tween 80: Saline = 10 : 5 : 85 (i.e. 100 μL DMSO stock solution 50 μL Tween 80 850 μL Saline)
*Preparation of saline: Dissolve 0.9 g of sodium chloride in 100 mL ddH ₂ O to obtain a clear solution.
Injection Formulation 2: DMSO : PEG300Tween 80 : Saline = 10 : 40 : 5 : 45 (i.e. 100 μL DMSO 400 μLPEG300 50 μL Tween 80 450 μL Saline)
Injection Formulation 3: DMSO : Corn oil = 10 : 90 (i.e. 100 μL DMSO 900 μL Corn oil)
Example: Take the Injection Formulation 3 (DMSO : Corn oil = 10 : 90) as an example, if 1 mL of 2.5 mg/mL working solution is to be prepared, you can take 100 μL 25 mg/mL DMSO stock solution and add to 900 μL corn oil, mix well to obtain a clear or suspension solution (2.5 mg/mL, ready for use in animals).
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Injection Formulation 4: DMSO : 20% SBE-β-CD in saline = 10 : 90 [i.e. 100 μL DMSO 900 μL (20% SBE-β-CD in saline)]
*Preparation of 20% SBE-β-CD in Saline (4°C,1 week): Dissolve 2 g SBE-β-CD in 10 mL saline to obtain a clear solution.
Injection Formulation 5: 2-Hydroxypropyl-β-cyclodextrin : Saline = 50 : 50 (i.e. 500 μL 2-Hydroxypropyl-β-cyclodextrin 500 μL Saline)
Injection Formulation 6: DMSO : PEG300 : castor oil : Saline = 5 : 10 : 20 : 65 (i.e. 50 μL DMSO 100 μLPEG300 200 μL castor oil 650 μL Saline)
Injection Formulation 7: Ethanol : Cremophor : Saline = 10: 10 : 80 (i.e. 100 μL Ethanol 100 μL Cremophor 800 μL Saline)
Injection Formulation 8: Dissolve in Cremophor/Ethanol (50 : 50), then diluted by Saline
Injection Formulation 9: EtOH : Corn oil = 10 : 90 (i.e. 100 μL EtOH 900 μL Corn oil)
Injection Formulation 10: EtOH : PEG300Tween 80 : Saline = 10 : 40 : 5 : 45 (i.e. 100 μL EtOH 400 μLPEG300 50 μL Tween 80 450 μL Saline)


Oral Formulations
Oral Formulation 1: Suspend in 0.5% CMC Na (carboxymethylcellulose sodium)
Oral Formulation 2: Suspend in 0.5% Carboxymethyl cellulose
Example: Take the Oral Formulation 1 (Suspend in 0.5% CMC Na) as an example, if 100 mL of 2.5 mg/mL working solution is to be prepared, you can first prepare 0.5% CMC Na solution by measuring 0.5 g CMC Na and dissolve it in 100 mL ddH2O to obtain a clear solution; then add 250 mg of the product to 100 mL 0.5% CMC Na solution, to make the suspension solution (2.5 mg/mL, ready for use in animals).
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Oral Formulation 3: Dissolved in PEG400
Oral Formulation 4: Suspend in 0.2% Carboxymethyl cellulose
Oral Formulation 5: Dissolve in 0.25% Tween 80 and 0.5% Carboxymethyl cellulose
Oral Formulation 6: Mixing with food powders


Note: Please be aware that the above formulations are for reference only. InvivoChem strongly recommends customers to read literature methods/protocols carefully before determining which formulation you should use for in vivo studies, as different compounds have different solubility properties and have to be formulated differently.

 (Please use freshly prepared in vivo formulations for optimal results.)
Preparing Stock Solutions 1 mg 5 mg 10 mg
1 mM 3.8565 mL 19.2827 mL 38.5654 mL
5 mM 0.7713 mL 3.8565 mL 7.7131 mL
10 mM 0.3857 mL 1.9283 mL 3.8565 mL

*Note: Please select an appropriate solvent for the preparation of stock solution based on your experiment needs. For most products, DMSO can be used for preparing stock solutions (e.g. 5 mM, 10 mM, or 20 mM concentration); some products with high aqueous solubility may be dissolved in water directly. Solubility information is available at the above Solubility Data section. Once the stock solution is prepared, aliquot it to routine usage volumes and store at -20°C or -80°C. Avoid repeated freeze and thaw cycles.

Calculator

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An example of molarity calculation using the molarity calculator is shown below:
What is the mass of compound required to make a 10 mM stock solution in 5 ml of DMSO given that the molecular weight of the compound is 350.26 g/mol?
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  • The answer of 17.513 mg appears in the Mass box. In a similar way, you may calculate the volume and concentration.

Dilution Calculator allows you to calculate how to dilute a stock solution of known concentrations. For example, you may Enter C1, C2 & V2 to calculate V1, as detailed below:

What volume of a given 10 mM stock solution is required to make 25 ml of a 25 μM solution?
Using the equation C1V1 = C2V2, where C1=10 mM, C2=25 μM, V2=25 ml and V1 is the unknown:
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  • The answer of 62.5 μL (0.1 ml) appears in the Volume (Start) box
g/mol

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Note: Chemical formula is case sensitive: C12H18N3O4  c12h18n3o4
Instructions to calculate molar mass (molecular weight) of a chemical compound:
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Definitions of molecular mass, molecular weight, molar mass and molar weight:
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  • Molar mass (molar weight) is the mass of one mole of a substance and is expressed in g/mol.
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In vivo Formulation Calculator (Clear solution)
Step 1: Enter information below (Recommended: An additional animal to make allowance for loss during the experiment)
Step 2: Enter in vivo formulation (This is only a calculator, not the exact formulation for a specific product. Please contact us first if there is no in vivo formulation in the solubility section.)
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Calculation results

Working concentration mg/mL;

Method for preparing DMSO stock solution mg drug pre-dissolved in μL DMSO (stock solution concentration mg/mL). Please contact us first if the concentration exceeds the DMSO solubility of the batch of drug.

Method for preparing in vivo formulation:Take μL DMSO stock solution, next add μL PEG300, mix and clarify, next addμL Tween 80, mix and clarify, next add μL ddH2O,mix and clarify.

(1) Please be sure that the solution is clear before the addition of next solvent. Dissolution methods like vortex, ultrasound or warming and heat may be used to aid dissolving.
             (2) Be sure to add the solvent(s) in order.

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