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3-Cyanoumbelliferone

Cat No.:V46033 Purity: ≥98%
3-Cyanoumbelliferone is a coumarin analogue used as a molecular probe and fluorescent dye.
3-Cyanoumbelliferone
3-Cyanoumbelliferone Chemical Structure CAS No.: 19088-73-4
Product category: New3
This product is for research use only, not for human use. We do not sell to patients.
Size Price Stock Qty
500mg
Other Sizes
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Product Description
3-Cyanoumbelliferone is a coumarin analogue used as a molecular probe and fluorescent dye. 3-Cyanoumbelliferone is also a macrophage migration inhibitory factor (MIF) tautomerase inhibitor (antagonist) with Ki of 2.9 μM.
3-Cyanoumbelliferone (CAS 19088-73-4) is a coumarin analogue used as a molecular probe and fluorescent dye. Its molecular formula is C10H5NO3 and molecular weight is 187.15 g/mol. The compound is also a macrophage migration inhibitory factor (MIF) tautomerase inhibitor with a Ki of 2.9 μM. It appears as a light orange to yellow to green powder to crystal. The compound is a fluorescent probe with applications in biological research.
Biological Activity I Assay Protocols (From Reference)
Targets
The primary target of 3-Cyanoumbelliferone is macrophage migration inhibitory factor (MIF) tautomerase, an enzyme involved in inflammatory responses. Its mechanism of action as an inhibitor involves binding to the active site of MIF tautomerase, thereby inhibiting its enzymatic activity. This inhibition can modulate inflammatory pathways. As a fluorescent dye, its mechanism is based on its coumarin chromophore, which absorbs light and emits fluorescence, allowing it to be used as a probe for various applications.
ln Vitro
In vitro, 3-Cyanoumbelliferone is used as a molecular probe and fluorescent dye. It is a macrophage migration inhibitory factor (MIF) tautomerase inhibitor with a Ki of 2.9 μM. As a coumarin analogue, it exhibits fluorescence properties that make it suitable for use as a probe in biological assays. Its ability to inhibit MIF tautomerase makes it a valuable tool for studying the role of MIF in inflammation and other disease processes.
ln Vivo
In vivo activity of 3-Cyanoumbelliferone is not well-documented. As a MIF tautomerase inhibitor, it could potentially have anti-inflammatory effects in vivo. However, specific data on its efficacy in animal models of inflammation is not available. Its use as a fluorescent probe may also be applicable in vivo for imaging purposes, depending on its pharmacokinetic properties and tissue distribution.
Enzyme Assay
In vitro enzyme/receptor binding (non-cell) assays for 3-Cyanoumbelliferone typically involve measuring its inhibition of MIF tautomerase activity. A standard protocol: recombinant MIF tautomerase is incubated with a substrate (e.g., D-dopachrome) in a buffer. The enzyme activity is measured by monitoring the change in absorbance at a specific wavelength. Various concentrations of 3-Cyanoumbelliferone are added to the reaction mixture, and the inhibition of enzyme activity is determined. The Ki value (2.9 μM) is calculated from the dose-response curve.
Cell Assay
In vitro cell-based assays for 3-Cyanoumbelliferone could involve studying its effects on MIF-mediated signaling. A standard protocol: cells (e.g., macrophages) are treated with 3-Cyanoumbelliferone and stimulated with MIF or other inflammatory stimuli. The activation of downstream signaling pathways (e.g., ERK, AKT) is assessed by Western blotting. The production of inflammatory cytokines (e.g., TNF-α, IL-6) is measured by ELISA. The compound's effects on cell migration and proliferation can also be assessed. These assays help to elucidate the cellular effects of MIF inhibition.
Animal Protocol
In vivo animal experiments for 3-Cyanoumbelliferone have not been described in the literature. For MIF inhibitors, a standard in vivo study would use a mouse model of inflammation or autoimmune disease. For example, mice could be treated with 3-Cyanoumbelliferone in a model of sepsis, arthritis, or colitis. The severity of inflammation would be assessed by measuring clinical scores, inflammatory markers, and histopathology. Such studies would evaluate the compound's potential as an anti-inflammatory agent.
ADME/Pharmacokinetics
Metabolism / Metabolites
3-Cyano-7-hydroxycoumarin is a known human metabolite of 3-cyano-7-ethoxycoumarin and 3-cyano-7-methoxycoumarin.
Pharmacokinetic properties of 3-Cyanoumbelliferone have not been characterized. Its molecular weight is 187.15 g/mol. The compound is a small, lipophilic molecule that is likely to be absorbed if administered orally. Its fluorescence properties are pH-dependent, which may affect its detection in different biological environments. The compound is typically stored at room temperature.
Toxicity/Toxicokinetics
Toxicity data for 3-Cyanoumbelliferone is limited. As a chemical reagent, it should be handled with standard laboratory precautions. The compound contains a nitrile group, which may pose some toxicity concerns. Inhalation, ingestion, and skin contact should be avoided. Appropriate personal protective equipment should be worn.
References

[1]. Coumarin and chromen-4-one analogues as tautomerase inhibitors of macrophage migration inhibitory factor: discovery and X-ray crystallography. J Med Chem. 2001 Feb 15;44(4):540-7.

Additional Infomation
3-Cyanoumbelliferone is a coumarin analogue used as a molecular probe and fluorescent dye. It is also a macrophage migration inhibitory factor (MIF) tautomerase inhibitor with a Ki of 2.9 μM. It is used in research to study MIF function and as a fluorescent probe. It is not a drug and has no clinical use or approval status. It is commercially available from chemical suppliers for research purposes only.
These protocols are for reference only. InvivoChem does not independently validate these methods.
Physicochemical Properties
Molecular Formula
C10H5NO3
Molecular Weight
187.1516
Exact Mass
187.027
CAS #
19088-73-4
PubChem CID
5393173
Appearance
Yellow to orange solid powder
Density
1.5 g/cm3
Boiling Point
436.6ºC at 760 mmHg
Melting Point
≥250ºC(lit.)
Flash Point
217.8ºC
Vapour Pressure
3.13E-08mmHg at 25°C
Index of Refraction
1.667
LogP
1.37
Hydrogen Bond Donor Count
1
Hydrogen Bond Acceptor Count
4
Rotatable Bond Count
0
Heavy Atom Count
14
Complexity
339
Defined Atom Stereocenter Count
0
InChi Key
IJQYTHQDUDCJEQ-UHFFFAOYSA-N
InChi Code
InChI=1S/C10H5NO3/c11-5-7-3-6-1-2-8(12)4-9(6)14-10(7)13/h1-4,12H
Chemical Name
7-hydroxy-2-oxochromene-3-carbonitrile
HS Tariff Code
2934.99.9001
Storage

Powder      -20°C    3 years

                     4°C     2 years

In solvent   -80°C    6 months

                  -20°C    1 month

Note: Please store this product in a sealed and protected environment (e.g. under nitrogen), avoid exposure to moisture.
Shipping Condition
Room temperature (This product is stable at ambient temperature for a few days during ordinary shipping and time spent in Customs)
Solubility Data
Solubility (In Vitro)
May dissolve in DMSO (in most cases), if not, try other solvents such as H2O, Ethanol, or DMF with a minute amount of products to avoid loss of samples
Solubility (In Vivo)
Note: Listed below are some common formulations that may be used to formulate products with low water solubility (e.g. < 1 mg/mL), you may test these formulations using a minute amount of products to avoid loss of samples.

Injection Formulations
(e.g. IP/IV/IM/SC)
Injection Formulation 1: DMSO : Tween 80: Saline = 10 : 5 : 85 (i.e. 100 μL DMSO stock solution 50 μL Tween 80 850 μL Saline)
*Preparation of saline: Dissolve 0.9 g of sodium chloride in 100 mL ddH ₂ O to obtain a clear solution.
Injection Formulation 2: DMSO : PEG300Tween 80 : Saline = 10 : 40 : 5 : 45 (i.e. 100 μL DMSO 400 μLPEG300 50 μL Tween 80 450 μL Saline)
Injection Formulation 3: DMSO : Corn oil = 10 : 90 (i.e. 100 μL DMSO 900 μL Corn oil)
Example: Take the Injection Formulation 3 (DMSO : Corn oil = 10 : 90) as an example, if 1 mL of 2.5 mg/mL working solution is to be prepared, you can take 100 μL 25 mg/mL DMSO stock solution and add to 900 μL corn oil, mix well to obtain a clear or suspension solution (2.5 mg/mL, ready for use in animals).
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Injection Formulation 4: DMSO : 20% SBE-β-CD in saline = 10 : 90 [i.e. 100 μL DMSO 900 μL (20% SBE-β-CD in saline)]
*Preparation of 20% SBE-β-CD in Saline (4°C,1 week): Dissolve 2 g SBE-β-CD in 10 mL saline to obtain a clear solution.
Injection Formulation 5: 2-Hydroxypropyl-β-cyclodextrin : Saline = 50 : 50 (i.e. 500 μL 2-Hydroxypropyl-β-cyclodextrin 500 μL Saline)
Injection Formulation 6: DMSO : PEG300 : castor oil : Saline = 5 : 10 : 20 : 65 (i.e. 50 μL DMSO 100 μLPEG300 200 μL castor oil 650 μL Saline)
Injection Formulation 7: Ethanol : Cremophor : Saline = 10: 10 : 80 (i.e. 100 μL Ethanol 100 μL Cremophor 800 μL Saline)
Injection Formulation 8: Dissolve in Cremophor/Ethanol (50 : 50), then diluted by Saline
Injection Formulation 9: EtOH : Corn oil = 10 : 90 (i.e. 100 μL EtOH 900 μL Corn oil)
Injection Formulation 10: EtOH : PEG300Tween 80 : Saline = 10 : 40 : 5 : 45 (i.e. 100 μL EtOH 400 μLPEG300 50 μL Tween 80 450 μL Saline)


Oral Formulations
Oral Formulation 1: Suspend in 0.5% CMC Na (carboxymethylcellulose sodium)
Oral Formulation 2: Suspend in 0.5% Carboxymethyl cellulose
Example: Take the Oral Formulation 1 (Suspend in 0.5% CMC Na) as an example, if 100 mL of 2.5 mg/mL working solution is to be prepared, you can first prepare 0.5% CMC Na solution by measuring 0.5 g CMC Na and dissolve it in 100 mL ddH2O to obtain a clear solution; then add 250 mg of the product to 100 mL 0.5% CMC Na solution, to make the suspension solution (2.5 mg/mL, ready for use in animals).
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Oral Formulation 3: Dissolved in PEG400
Oral Formulation 4: Suspend in 0.2% Carboxymethyl cellulose
Oral Formulation 5: Dissolve in 0.25% Tween 80 and 0.5% Carboxymethyl cellulose
Oral Formulation 6: Mixing with food powders


Note: Please be aware that the above formulations are for reference only. InvivoChem strongly recommends customers to read literature methods/protocols carefully before determining which formulation you should use for in vivo studies, as different compounds have different solubility properties and have to be formulated differently.

 (Please use freshly prepared in vivo formulations for optimal results.)
Preparing Stock Solutions 1 mg 5 mg 10 mg
1 mM 5.3433 mL 26.7165 mL 53.4331 mL
5 mM 1.0687 mL 5.3433 mL 10.6866 mL
10 mM 0.5343 mL 2.6717 mL 5.3433 mL

*Note: Please select an appropriate solvent for the preparation of stock solution based on your experiment needs. For most products, DMSO can be used for preparing stock solutions (e.g. 5 mM, 10 mM, or 20 mM concentration); some products with high aqueous solubility may be dissolved in water directly. Solubility information is available at the above Solubility Data section. Once the stock solution is prepared, aliquot it to routine usage volumes and store at -20°C or -80°C. Avoid repeated freeze and thaw cycles.

Calculator

Molarity Calculator allows you to calculate the mass, volume, and/or concentration required for a solution, as detailed below:

  • Calculate the Mass of a compound required to prepare a solution of known volume and concentration
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An example of molarity calculation using the molarity calculator is shown below:
What is the mass of compound required to make a 10 mM stock solution in 5 ml of DMSO given that the molecular weight of the compound is 350.26 g/mol?
  • Enter 350.26 in the Molecular Weight (MW) box
  • Enter 10 in the Concentration box and choose the correct unit (mM)
  • Enter 5 in the Volume box and choose the correct unit (mL)
  • Click the “Calculate” button
  • The answer of 17.513 mg appears in the Mass box. In a similar way, you may calculate the volume and concentration.

Dilution Calculator allows you to calculate how to dilute a stock solution of known concentrations. For example, you may Enter C1, C2 & V2 to calculate V1, as detailed below:

What volume of a given 10 mM stock solution is required to make 25 ml of a 25 μM solution?
Using the equation C1V1 = C2V2, where C1=10 mM, C2=25 μM, V2=25 ml and V1 is the unknown:
  • Enter 10 into the Concentration (Start) box and choose the correct unit (mM)
  • Enter 25 into the Concentration (End) box and select the correct unit (mM)
  • Enter 25 into the Volume (End) box and choose the correct unit (mL)
  • Click the “Calculate” button
  • The answer of 62.5 μL (0.1 ml) appears in the Volume (Start) box
g/mol

Molecular Weight Calculator allows you to calculate the molar mass and elemental composition of a compound, as detailed below:

Note: Chemical formula is case sensitive: C12H18N3O4  c12h18n3o4
Instructions to calculate molar mass (molecular weight) of a chemical compound:
  • To calculate molar mass of a chemical compound, please enter the chemical/molecular formula and click the “Calculate’ button.
Definitions of molecular mass, molecular weight, molar mass and molar weight:
  • Molecular mass (or molecular weight) is the mass of one molecule of a substance and is expressed in the unified atomic mass units (u). (1 u is equal to 1/12 the mass of one atom of carbon-12)
  • Molar mass (molar weight) is the mass of one mole of a substance and is expressed in g/mol.
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Reconstitution Calculator allows you to calculate the volume of solvent required to reconstitute your vial.

  • Enter the mass of the reagent and the desired reconstitution concentration as well as the correct units
  • Click the “Calculate” button
  • The answer appears in the Volume (to add to vial) box
In vivo Formulation Calculator (Clear solution)
Step 1: Enter information below (Recommended: An additional animal to make allowance for loss during the experiment)
Step 2: Enter in vivo formulation (This is only a calculator, not the exact formulation for a specific product. Please contact us first if there is no in vivo formulation in the solubility section.)
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Calculation results

Working concentration mg/mL;

Method for preparing DMSO stock solution mg drug pre-dissolved in μL DMSO (stock solution concentration mg/mL). Please contact us first if the concentration exceeds the DMSO solubility of the batch of drug.

Method for preparing in vivo formulation:Take μL DMSO stock solution, next add μL PEG300, mix and clarify, next addμL Tween 80, mix and clarify, next add μL ddH2O,mix and clarify.

(1) Please be sure that the solution is clear before the addition of next solvent. Dissolution methods like vortex, ultrasound or warming and heat may be used to aid dissolving.
             (2) Be sure to add the solvent(s) in order.

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