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Necrostatin 2 S enantiomer

Alias: Necrostatin 2 S enantiomer
Cat No.:V29086 Purity: ≥98%
Necrostatin 2 S-isomer is the S-enantiomer of Necrostatin 2 (also known asNecrostatin-2, Necrostatin-2 racemate, (±)-Necrostatin-2, 7-Cl-O-Nec-1 and Nec-1s) which is a potent necroptosis inhibitor with EC50 of 50 nM.
Necrostatin 2 S enantiomer
Necrostatin 2 S enantiomer Chemical Structure CAS No.: 852391-20-9
Product category: RIP kinase
This product is for research use only, not for human use. We do not sell to patients.
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Other Forms of Necrostatin 2 S enantiomer:

  • Necrostatin 2 R-isomer
  • Necrostatin-2 racemate
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Top Publications Citing lnvivochem Products
Product Description
Necrostatin 2 S-isomer is the S-enantiomer of Necrostatin 2 (also known as Necrostatin-2, Necrostatin-2 racemate, (±)-Necrostatin-2, 7-Cl-O-Nec-1 and Nec-1s) which is a potent necroptosis inhibitor with EC50 of 50 nM. Receptor-interacting protein kinase 1 (RIPK1) autophosphorylation is inhibited by this racemic mixture.


Necrostatin 2 S enantiomer (CAS# 852391-20-9) is the S-enantiomer of Necrostatin 2, also known as Necrostatin-2, Necrostatin-2 racemate, (+/-)-Necrostatin-2, 7-Cl-O-Nec-1, and Nec-1s. It is a potent inhibitor of necroptosis, a form of programmed cell death. The compound has a molecular formula of C13H12ClN3O2 and a molecular weight of 277.71 g/mol. Necrostatin 2 S enantiomer acts as a RIPK1 inhibitor lacking the IDO-targeting effect. It has demonstrated efficacy in both in vitro and in vivo models, including an animal model of ischemic stroke. The compound is used as a research tool for studying cell death pathways and inflammatory diseases.
Biological Activity I Assay Protocols (From Reference)
Targets
Necrostatin 2 S enantiomer specifically targets receptor-interacting protein kinase 1 (RIPK1), a key regulator of necroptosis. It inhibits RIPK1 autophosphorylation in a dose-dependent manner. The compound lacks the IDO-targeting effect seen with some other necroptosis inhibitors, making it more selective for RIPK1. It also targets TNF-alpha, a cytokine involved in inflammation and cell death processes. The compound's mechanism involves blocking the RIPK1-dependent necroptosis pathway, thereby preventing TNF-alpha-induced cell death in appropriate cellular contexts.
ln Vitro
In vitro studies have demonstrated that Necrostatin 2 S enantiomer is a potent inhibitor of necroptosis with an EC50 of 50 nM. The compound inhibits human recombinant RIPK1 with an IC50 of 320.0 nM. In FADD-deficient Jurkat cells treated with TNF-alpha, the compound exhibits an EC50 of 50 nM for inhibition of necroptosis. It shows low potency against human recombinant AurKA and AurKB with IC50 values greater than 3000 nM. The compound's selectivity for RIPK1 over other kinases makes it a valuable tool for studying necroptosis pathways.
ln Vivo
In vivo studies have shown that Necrostatin 2 S enantiomer is efficacious in an animal model of ischemic stroke. The compound has been evaluated in various preclinical models of cell death and inflammation. It inhibits RIPK1-dependent necroptosis in vivo, demonstrating neuroprotective effects in ischemic injury models. The compound's efficacy in animal models supports its use as a research tool for studying necroptosis-related pathologies, including neurodegenerative diseases, inflammatory disorders, and ischemia-reperfusion injury. Detailed dose-response and pharmacokinetic studies have been conducted in rodents.
Enzyme Assay
The in vitro enzyme/receptor binding assay for Necrostatin 2 S enantiomer typically involves kinase activity assays using purified recombinant RIPK1 protein. The compound is incubated with RIPK1 and a suitable peptide substrate in the presence of ATP. Kinase activity is measured by detecting phosphorylated substrate using methods such as radioactivity, fluorescence, or ELISA. IC50 values are determined from dose-response curves. Selectivity profiling is performed using panels of kinases including AurKA and AurKB. Data analysis using nonlinear regression models yields inhibition constants and confirms target engagement.
Cell Assay
In vitro cellular assays for Necrostatin 2 S enantiomer are conducted using cell lines such as FADD-deficient Jurkat T cells. Cells are treated with TNF-alpha to induce necroptosis, and varying concentrations of the compound are added to assess inhibition. Cell death is measured using viability assays such as propidium iodide staining, LDH release, or MTT assays. The EC50 for inhibition of necroptosis is determined from dose-response curves. Control experiments include treatment with necroptosis inhibitors and assessment of apoptosis markers to confirm the specific inhibition of necroptosis rather than other cell death pathways.
Animal Protocol
In vivo animal studies for Necrostatin 2 S enantiomer are typically performed in rodent models of ischemic stroke or other necroptosis-related pathologies. The compound is administered via intraperitoneal injection or other suitable routes at various doses. Efficacy is assessed by measuring infarct volume, neurological function scores, and survival rates. Tissue samples are collected for histopathological analysis and biomarker assessment. Pharmacodynamic markers such as RIPK1 phosphorylation are measured to confirm target engagement. Standard animal study designs with appropriate control groups are employed.
ADME/Pharmacokinetics
Pharmacokinetic data for Necrostatin 2 S enantiomer are limited in the available literature. The compound has a molecular weight of 277.71 g/mol and is formulated for research applications. As a small molecule inhibitor, it is expected to have reasonable oral bioavailability and tissue distribution. Pharmacokinetic studies in animal models have been conducted to support in vivo efficacy studies. The compound's metabolic stability, half-life, and clearance parameters would be determined using standard LC-MS/MS methods. However, specific PK parameters are not extensively reported in the public domain.
Toxicity/Toxicokinetics
Toxicology data for Necrostatin 2 S enantiomer are not extensively reported. As a research compound, standard safety assessments would include evaluation of cytotoxicity in cell culture models and acute toxicity in animal studies. The compound's mechanism of action involving RIPK1 inhibition suggests potential effects on immune function and inflammation that would need to be evaluated. However, specific toxicity data, including LD50 values, organ toxicity profiles, and genotoxicity assessments, are not readily available. Standard preclinical safety evaluations would be required for therapeutic development.
References

[1]. Structure-activity relationship study of [1,2,3]thiadiazole necroptosis inhibitors. Bioorg Med Chem Lett. 2007 Dec 15;17(24):6836-40.

[2]. Necrostatin-1 analogues: critical issues on the specificity, activity and in vivo use in experimental disease models. Cell Death Dis. 2012 Nov 29;3:e437.

[3]. Structure-activity relationship study of tricyclic necroptosis inhibitors. J Med Chem. 2007 Apr 19;50(8):1886-95.

[4]. Structure-activity relationship study of novel necroptosis inhibitors. Bioorg Med Chem Lett. 2005 Nov 15;15(22):5039-44.

Additional Infomation
Necrostatin 2 S enantiomer (Nec-1s) is the S-enantiomer of Necrostatin 2 and a potent necroptosis inhibitor with an EC50 of 50 nM. It acts as a RIPK1 inhibitor lacking the IDO-targeting effect and has demonstrated efficacy in an animal model of ischemic stroke. The compound has a molecular formula of C13H12ClN3O2. It is used as a research tool for studying necroptosis, inflammation, and cell death pathways. The compound is for research use only and is not approved for therapeutic applications.
These protocols are for reference only. InvivoChem does not independently validate these methods.
Physicochemical Properties
Molecular Formula
C13H12CLN3O2
Molecular Weight
277.706281661987
Exact Mass
277.062
CAS #
852391-20-9
Related CAS #
Necrostatin 2;852391-19-6;Necrostatin 2 racemate;852391-15-2
PubChem CID
44404825
Appearance
White to light yellow solid powder
LogP
2.18
Hydrogen Bond Donor Count
2
Hydrogen Bond Acceptor Count
2
Rotatable Bond Count
2
Heavy Atom Count
19
Complexity
403
Defined Atom Stereocenter Count
1
SMILES
CN1C(=O)[C@@H](NC1=O)CC2=CNC3=C2C=CC=C3Cl
InChi Key
WIKGAEMMNQTUGL-JTQLQIEISA-N
InChi Code
InChI=1S/C13H12ClN3O2/c1-17-12(18)10(16-13(17)19)5-7-6-15-11-8(7)3-2-4-9(11)14/h2-4,6,10,15H,5H2,1H3,(H,16,19)/t10-/m0/s1
Chemical Name
(5S)-5-[(7-chloro-1H-indol-3-yl)methyl]-3-methylimidazolidine-2,4-dione
Synonyms
Necrostatin 2 S enantiomer
HS Tariff Code
2934.99.9001
Storage

Powder      -20°C    3 years

                     4°C     2 years

In solvent   -80°C    6 months

                  -20°C    1 month

Shipping Condition
Room temperature (This product is stable at ambient temperature for a few days during ordinary shipping and time spent in Customs)
Solubility Data
Solubility (In Vitro)
DMSO: ~50 mg/mL (~180.0 mM)
Solubility (In Vivo)
Solubility in Formulation 1: ≥ 3 mg/mL (10.80 mM) (saturation unknown) in 10% DMSO + 40% PEG300 + 5% Tween80 + 45% Saline (add these co-solvents sequentially from left to right, and one by one), clear solution.
For example, if 1 mL of working solution is to be prepared, you can add 100 μL of 30.0 mg/mL clear DMSO stock solution to 400 μL PEG300 and mix evenly; then add 50 μL Tween-80 to the above solution and mix evenly; then add 450 μL normal saline to adjust the volume to 1 mL.
Preparation of saline: Dissolve 0.9 g of sodium chloride in 100 mL ddH₂ O to obtain a clear solution.

Solubility in Formulation 2: ≥ 3 mg/mL (10.80 mM) (saturation unknown) in 10% DMSO + 90% (20% SBE-β-CD in Saline) (add these co-solvents sequentially from left to right, and one by one), clear solution.
For example, if 1 mL of working solution is to be prepared, you can add 100 μL of 30.0 mg/mL clear DMSO stock solution to 900 μL of 20% SBE-β-CD physiological saline solution and mix evenly.
Preparation of 20% SBE-β-CD in Saline (4°C,1 week): Dissolve 2 g SBE-β-CD in 10 mL saline to obtain a clear solution.

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Solubility in Formulation 3: ≥ 3 mg/mL (10.80 mM) (saturation unknown) in 10% DMSO + 90% Corn Oil (add these co-solvents sequentially from left to right, and one by one), clear solution.
For example, if 1 mL of working solution is to be prepared, you can add 100 μL of 30.0 mg/mL clear DMSO stock solution to 900 μL of corn oil and mix evenly.


 (Please use freshly prepared in vivo formulations for optimal results.)
Preparing Stock Solutions 1 mg 5 mg 10 mg
1 mM 3.6009 mL 18.0044 mL 36.0088 mL
5 mM 0.7202 mL 3.6009 mL 7.2018 mL
10 mM 0.3601 mL 1.8004 mL 3.6009 mL

*Note: Please select an appropriate solvent for the preparation of stock solution based on your experiment needs. For most products, DMSO can be used for preparing stock solutions (e.g. 5 mM, 10 mM, or 20 mM concentration); some products with high aqueous solubility may be dissolved in water directly. Solubility information is available at the above Solubility Data section. Once the stock solution is prepared, aliquot it to routine usage volumes and store at -20°C or -80°C. Avoid repeated freeze and thaw cycles.

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What volume of a given 10 mM stock solution is required to make 25 ml of a 25 μM solution?
Using the equation C1V1 = C2V2, where C1=10 mM, C2=25 μM, V2=25 ml and V1 is the unknown:
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g/mol

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Note: Chemical formula is case sensitive: C12H18N3O4  c12h18n3o4
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Definitions of molecular mass, molecular weight, molar mass and molar weight:
  • Molecular mass (or molecular weight) is the mass of one molecule of a substance and is expressed in the unified atomic mass units (u). (1 u is equal to 1/12 the mass of one atom of carbon-12)
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In vivo Formulation Calculator (Clear solution)
Step 1: Enter information below (Recommended: An additional animal to make allowance for loss during the experiment)
Step 2: Enter in vivo formulation (This is only a calculator, not the exact formulation for a specific product. Please contact us first if there is no in vivo formulation in the solubility section.)
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Calculation results

Working concentration mg/mL;

Method for preparing DMSO stock solution mg drug pre-dissolved in μL DMSO (stock solution concentration mg/mL). Please contact us first if the concentration exceeds the DMSO solubility of the batch of drug.

Method for preparing in vivo formulation:Take μL DMSO stock solution, next add μL PEG300, mix and clarify, next addμL Tween 80, mix and clarify, next add μL ddH2O,mix and clarify.

(1) Please be sure that the solution is clear before the addition of next solvent. Dissolution methods like vortex, ultrasound or warming and heat may be used to aid dissolving.
             (2) Be sure to add the solvent(s) in order.

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