Y16

Alias: RhoA-IN-Y16; Y16; Y-16; Y 16
Cat No.:V28342 Purity: ≥98%
Y16, formerly known as RhoA-IN-Y16, is a RhoA inhibitor, Y16 blocks the binding of LARG, a DBL-family Rho guanine nucleotide exchange factor, with Rho (Kd = 80 nM).
Y16 Chemical Structure CAS No.: 429653-73-6
Product category: Ras
This product is for research use only, not for human use. We do not sell to patients.
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Product Description

Y16, formerly known as RhoA-IN-Y16, is a RhoA inhibitor, Y16 blocks the binding of LARG, a DBL-family Rho guanine nucleotide exchange factor, with Rho (Kd = 80 nM). Y16 specifically blocks the activation of the RhoA and RhoA signaling pathways that is catalyzed by LARG. Y16 prevents the MCF7 breast cancer cells from proliferating and migrating.

Biological Activity I Assay Protocols (From Reference)
Targets
LARG ( Kd = 76 nM )
ln Vitro
Y16 (10-30 μM; 24 hours; NIH 3T3 cells) is specific for RhoA and can inhibit the formation of RhoA-GTP induced by serum in a dose-dependent manner[1].
Y16 (10-30 μM; 24 hours; NIH 3T3 cells) effectively suppresses the production of phospho-MLC and phospho-FAK, which are downstream of RhoA, when induced by serum or SDF-1α[1].
Cell Assay
Cell Line: NIH 3T3 cells
Concentration: 10 μM, 30 μM
Incubation Time: 24 hours
Result: Inhibited RhoA-GTP formation induced by serum dose dependently and was specific for RhoA.
References

[1]. Small-molecule inhibitors targeting G-protein-coupled Rho guanine nucleotide exchange factors. Proc Natl Acad Sci U S A. 2013 Feb 19;110(8):3155-60.

These protocols are for reference only. InvivoChem does not independently validate these methods.
Physicochemical Properties
Molecular Formula
C24H20N2O3
Molecular Weight
384.435
Exact Mass
384.15
Elemental Analysis
C, 74.98; H, 5.24; N, 7.29; O, 12.49
CAS #
429653-73-6
Related CAS #
429653-73-6
Appearance
White to off-white solid powder
SMILES
CC1=CC(=CC=C1)COC2=CC=CC(=C2)/C=C/3\C(=O)NN(C3=O)C4=CC=CC=C4
InChi Key
ITMLWGWTDWJSRZ-PXLXIMEGSA-N
InChi Code
InChI=1S/C24H20N2O3/c1-17-7-5-9-19(13-17)16-29-21-12-6-8-18(14-21)15-22-23(27)25-26(24(22)28)20-10-3-2-4-11-20/h2-15H,16H2,1H3,(H,25,27)/b22-15+
Chemical Name
(4E)-4-[[3-[(3-methylphenyl)methoxy]phenyl]methylidene]-1-phenylpyrazolidine-3,5-dione
Synonyms
RhoA-IN-Y16; Y16; Y-16; Y 16
HS Tariff Code
2934.99.9001
Storage

Powder      -20°C    3 years

                     4°C     2 years

In solvent   -80°C    6 months

                  -20°C    1 month

Shipping Condition
Room temperature (This product is stable at ambient temperature for a few days during ordinary shipping and time spent in Customs)
Solubility Data
Solubility (In Vitro)
DMSO: 25~39 mg/mL (65.0~101.4 mM)
Solubility (In Vivo)
Solubility in Formulation 1: 2.5 mg/mL (6.50 mM) in 10% DMSO + 40% PEG300 + 5% Tween80 + 45% Saline (add these co-solvents sequentially from left to right, and one by one), suspension solution; with sonication.
For example, if 1 mL of working solution is to be prepared, you can add 100 μL of 25.0 mg/mL clear DMSO stock solution to 400 μL PEG300 and mix evenly; then add 50 μL Tween-80 to the above solution and mix evenly; then add 450 μL normal saline to adjust the volume to 1 mL.
Preparation of saline: Dissolve 0.9 g of sodium chloride in 100 mL ddH₂ O to obtain a clear solution.

Solubility in Formulation 2: ≥ 2.5 mg/mL (6.50 mM) (saturation unknown) in 10% DMSO + 90% Corn Oil (add these co-solvents sequentially from left to right, and one by one), clear solution.
For example, if 1 mL of working solution is to be prepared, you can add 100 μL of 25.0 mg/mL clear DMSO stock solution to 900 μL of corn oil and mix evenly.

 (Please use freshly prepared in vivo formulations for optimal results.)
Preparing Stock Solutions 1 mg 5 mg 10 mg
1 mM 2.6012 mL 13.0059 mL 26.0119 mL
5 mM 0.5202 mL 2.6012 mL 5.2024 mL
10 mM 0.2601 mL 1.3006 mL 2.6012 mL

*Note: Please select an appropriate solvent for the preparation of stock solution based on your experiment needs. For most products, DMSO can be used for preparing stock solutions (e.g. 5 mM, 10 mM, or 20 mM concentration); some products with high aqueous solubility may be dissolved in water directly. Solubility information is available at the above Solubility Data section. Once the stock solution is prepared, aliquot it to routine usage volumes and store at -20°C or -80°C. Avoid repeated freeze and thaw cycles.

Calculator

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An example of molarity calculation using the molarity calculator is shown below:
What is the mass of compound required to make a 10 mM stock solution in 5 ml of DMSO given that the molecular weight of the compound is 350.26 g/mol?
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  • Click the “Calculate” button
  • The answer of 17.513 mg appears in the Mass box. In a similar way, you may calculate the volume and concentration.

Dilution Calculator allows you to calculate how to dilute a stock solution of known concentrations. For example, you may Enter C1, C2 & V2 to calculate V1, as detailed below:

What volume of a given 10 mM stock solution is required to make 25 ml of a 25 μM solution?
Using the equation C1V1 = C2V2, where C1=10 mM, C2=25 μM, V2=25 ml and V1 is the unknown:
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  • The answer of 62.5 μL (0.1 ml) appears in the Volume (Start) box
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Molecular Weight Calculator allows you to calculate the molar mass and elemental composition of a compound, as detailed below:

Note: Chemical formula is case sensitive: C12H18N3O4  c12h18n3o4
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Definitions of molecular mass, molecular weight, molar mass and molar weight:
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  • Molar mass (molar weight) is the mass of one mole of a substance and is expressed in g/mol.
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In vivo Formulation Calculator (Clear solution)
Step 1: Enter information below (Recommended: An additional animal to make allowance for loss during the experiment)
Step 2: Enter in vivo formulation (This is only a calculator, not the exact formulation for a specific product. Please contact us first if there is no in vivo formulation in the solubility section.)
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Calculation results

Working concentration mg/mL;

Method for preparing DMSO stock solution mg drug pre-dissolved in μL DMSO (stock solution concentration mg/mL). Please contact us first if the concentration exceeds the DMSO solubility of the batch of drug.

Method for preparing in vivo formulation:Take μL DMSO stock solution, next add μL PEG300, mix and clarify, next addμL Tween 80, mix and clarify, next add μL ddH2O,mix and clarify.

(1) Please be sure that the solution is clear before the addition of next solvent. Dissolution methods like vortex, ultrasound or warming and heat may be used to aid dissolving.
             (2) Be sure to add the solvent(s) in order.

Biological Data
  • Identification of Y16 as an inhibitor of G-protein–coupled Rho GEFs. Proc Natl Acad Sci U S A . 2013 Feb 19;110(8):3155-60.
  • Biochemical characterization of Y16 interaction with Rho GEF. Proc Natl Acad Sci U S A . 2013 Feb 19;110(8):3155-60.
  • Cellular efficacy and specificity of Y16 in suppressing RhoA activity. Proc Natl Acad Sci U S A . 2013 Feb 19;110(8):3155-60.
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