SW044248

Alias: SW044248; SW 044248; SW-044248
Cat No.:V2893 Purity: ≥98%
SW044248 is a novel, potent and selective Topoisomerase I inhibitor that was identified through a screen for chemicals selectively toxic for non-small cell lung cancer (NSCLC) cell lines.
SW044248 Chemical Structure CAS No.: 522650-83-5
Product category: Topoisomerase
This product is for research use only, not for human use. We do not sell to patients.
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Purity & Quality Control Documentation

Purity: ≥98%

Product Description

SW044248 is a novel, potent and selective Topoisomerase I inhibitor that was identified through a screen for chemicals selectively toxic for non-small cell lung cancer (NSCLC) cell lines. It was discovered that in sensitive cells, but not in insensitive cells, SW044248 quickly inhibits macromolecular synthesis. A panel of 74 NSCLC cell lines was treated with SW044248, which was nontoxic to immortalized human bronchial cell lines and killed about 15% of them. SW044248 inhibited topoisomerase 1 (Top1) but not topoisomerase 2, and in sensitive HCC4017 cells, the acute transcriptional response to the drug correlated significantly with topoisomerase inhibitors. Camptothecin did not exhibit the same selective toxicity as SW044248, and SW044248 inhibited Top1 in a different way than camptothecin. Although deleting Top1 was eventually toxic, it did provide some protection against SW044248 for cells when done so via siRNA. siRNA to CDKN1A sensitized cells resistant to SW044248, and those cells upregulated CDKN1A in response to the compound. Thus, at least part of the differential sensitivity of NSCLC cells to SW044248 is the ability to upregulate CDKN1A.

Biological Activity I Assay Protocols (From Reference)
Targets
Topoisomerase I
ln Vitro

SW044248 is a non-canonical Top1 inhibitor that is harmful to specific NSCLC cell lines only. There is no impact of SW044248 on Top2. HBEC30KT and HCC44 cells are insensitive to SW044248 (2, 5, 10 μM), but sensitive cells (HCC4017 and H292 cells) are rapidly inhibited in transcription, translation, and DNA synthesis. Via the kinases GCN2 and PKR, SW044248 (10 μM) quickly initiates the integrated stress response. The toxicity of SW044248 is mitigated in HCC4017 cells by Top1 inhibition. Because p21CDKN1A is overexpressed in HBEC30KT and HCC44 cell lines, SW044248 (5, 10 μM) has no effect on them[1]. In 18 out of 74 NSCLC lines, SW044248 is selectively toxic[2].

ln Vivo

Cell Assay
In wells of 96-well plates, 100 μL of 50,000 cells/mL cell suspensions of distinct cell lines are added. The following day, 100 μL of cell medium was added to each well, substituting 2X concentration of either SW044248, camptothecin, or DMSO in triplicate. The wells' ATP concentration is determined using CelTiter-Glo after 96 and 120 hours. With the aid of a plate reader, luminescence is measured[1].
Animal Protocol


References

[1]. A Novel Inhibitor of Topoisomerase I Is Selectively Toxic for a Subset of Non-Small Cell Lung Cancer Cell Lines. Mol Cancer Ther. 2016 Jan;15(1):23-36.

[2]. Systematic identification of molecular subtype-selective vulnerabilities in non-small-cell lung cancer. Cell. 2013 Oct 24;155(3):552-66.

These protocols are for reference only. InvivoChem does not independently validate these methods.
Physicochemical Properties
Molecular Formula
C22H23N5O2S
Molecular Weight
421.52
Exact Mass
421.16
Elemental Analysis
C, 62.69; H, 5.50; N, 16.61; O, 7.59; S, 7.61
CAS #
522650-83-5
Related CAS #
522650-83-5
Appearance
Solid powder
SMILES
CCC(C(=O)NC1=CC=CC=C1OC)SC2=NC3=C(C4=CC=CC=C4N3CC)N=N2
InChi Key
PEVRGVRHMMZNGI-UHFFFAOYSA-N
InChi Code
InChI=1S/C22H23N5O2S/c1-4-18(21(28)23-15-11-7-9-13-17(15)29-3)30-22-24-20-19(25-26-22)14-10-6-8-12-16(14)27(20)5-2/h6-13,18H,4-5H2,1-3H3,(H,23,28)
Chemical Name
2-[(5-ethyl-[1,2,4]triazino[5,6-b]indol-3-yl)sulfanyl]-N-(2-methoxyphenyl)butanamide
Synonyms
SW044248; SW 044248; SW-044248
HS Tariff Code
2934.99.9001
Storage

Powder      -20°C    3 years

                     4°C     2 years

In solvent   -80°C    6 months

                  -20°C    1 month

Shipping Condition
Room temperature (This product is stable at ambient temperature for a few days during ordinary shipping and time spent in Customs)
Solubility Data
Solubility (In Vitro)
DMSO: ≥ 30 mg/mL
Water: N/A
Ethanol: N/A
Solubility (In Vivo)
Solubility in Formulation 1: ≥ 1.25 mg/mL (2.97 mM) (saturation unknown) in 10% DMSO + 90% Corn Oil (add these co-solvents sequentially from left to right, and one by one), clear solution.
For example, if 1 mL of working solution is to be prepared, you can add 100 μL of 12.5 mg/mL clear DMSO stock solution to 900 μL of corn oil and mix evenly.

 (Please use freshly prepared in vivo formulations for optimal results.)
Preparing Stock Solutions 1 mg 5 mg 10 mg
1 mM 2.3724 mL 11.8618 mL 23.7237 mL
5 mM 0.4745 mL 2.3724 mL 4.7447 mL
10 mM 0.2372 mL 1.1862 mL 2.3724 mL

*Note: Please select an appropriate solvent for the preparation of stock solution based on your experiment needs. For most products, DMSO can be used for preparing stock solutions (e.g. 5 mM, 10 mM, or 20 mM concentration); some products with high aqueous solubility may be dissolved in water directly. Solubility information is available at the above Solubility Data section. Once the stock solution is prepared, aliquot it to routine usage volumes and store at -20°C or -80°C. Avoid repeated freeze and thaw cycles.

Calculator

Molarity Calculator allows you to calculate the mass, volume, and/or concentration required for a solution, as detailed below:

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An example of molarity calculation using the molarity calculator is shown below:
What is the mass of compound required to make a 10 mM stock solution in 5 ml of DMSO given that the molecular weight of the compound is 350.26 g/mol?
  • Enter 350.26 in the Molecular Weight (MW) box
  • Enter 10 in the Concentration box and choose the correct unit (mM)
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  • Click the “Calculate” button
  • The answer of 17.513 mg appears in the Mass box. In a similar way, you may calculate the volume and concentration.

Dilution Calculator allows you to calculate how to dilute a stock solution of known concentrations. For example, you may Enter C1, C2 & V2 to calculate V1, as detailed below:

What volume of a given 10 mM stock solution is required to make 25 ml of a 25 μM solution?
Using the equation C1V1 = C2V2, where C1=10 mM, C2=25 μM, V2=25 ml and V1 is the unknown:
  • Enter 10 into the Concentration (Start) box and choose the correct unit (mM)
  • Enter 25 into the Concentration (End) box and select the correct unit (mM)
  • Enter 25 into the Volume (End) box and choose the correct unit (mL)
  • Click the “Calculate” button
  • The answer of 62.5 μL (0.1 ml) appears in the Volume (Start) box
g/mol

Molecular Weight Calculator allows you to calculate the molar mass and elemental composition of a compound, as detailed below:

Note: Chemical formula is case sensitive: C12H18N3O4  c12h18n3o4
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Definitions of molecular mass, molecular weight, molar mass and molar weight:
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Reconstitution Calculator allows you to calculate the volume of solvent required to reconstitute your vial.

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In vivo Formulation Calculator (Clear solution)
Step 1: Enter information below (Recommended: An additional animal to make allowance for loss during the experiment)
Step 2: Enter in vivo formulation (This is only a calculator, not the exact formulation for a specific product. Please contact us first if there is no in vivo formulation in the solubility section.)
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Calculation results

Working concentration mg/mL;

Method for preparing DMSO stock solution mg drug pre-dissolved in μL DMSO (stock solution concentration mg/mL). Please contact us first if the concentration exceeds the DMSO solubility of the batch of drug.

Method for preparing in vivo formulation:Take μL DMSO stock solution, next add μL PEG300, mix and clarify, next addμL Tween 80, mix and clarify, next add μL ddH2O,mix and clarify.

(1) Please be sure that the solution is clear before the addition of next solvent. Dissolution methods like vortex, ultrasound or warming and heat may be used to aid dissolving.
             (2) Be sure to add the solvent(s) in order.

Biological Data
  • SW044248


    SW044248 rapidly inhibits RNA, DNA and protein synthesis in HCC4017 but not HBEC30KT cells.2016 Jan;15(1):23-36.

  • SW044248


    SW044248 and CPT inhibit Top1 differentially. A. SW044248 does not inhibit Top2.2016 Jan;15(1):23-36.

  • SW044248


    Cells resistant to SW044248 increase p21CDKN1Aand cells sensitive to SW044248 do not.2016 Jan;15(1):23-36.

  • SW044248


    SW044248 rapidly activates the integrated stress response through kinases GCN2 and PKR.2016 Jan;15(1):23-36.

  • SW044248


    siRNA knockdown of GCN2 or Top1 decreases the stress responses to SW044248.2016 Jan;15(1):23-36.

  • SW044248


    SW044248 is selectively toxic for certain NSCLC cell lines.2016 Jan;15(1):23-36.

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