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E6 Berbamine

Alias: E6 berbamine; 114784-59-7; CHEMBL405686; [(1S,14R)-20,21,25-trimethoxy-15,30-dimethyl-7,23-dioxa-15,30-diazaheptacyclo[22.6.2.23,6.18,12.114,18.027,31.022,33]hexatriaconta-3(36),4,6(35),8,10,12(34),18,20,22(33),24,26,31-dodecaen-9-yl] 4-nitrobenzoate; 3,4,4aS,5,16aR,17,18,19-octahydro-21,22,26-trimethoxy-4,17-dimethyl-16H-1,24:6,9-dietheno-11,15-metheno-2H-pyrido[2',3':17,18][1,11]dioxacycloeicosino[2,3,4-ij]isoquinolin-12-ol-4-nitrobenzoate; Bio1_000778; Calmodulin inhibitor; CBiol_002003;
Cat No.:V92507 Purity: ≥98%
E6 Berbamine is a strong antagonist of calmodulin (CaM) (Berbamine p-nitrobenzoate).
E6 Berbamine
E6 Berbamine Chemical Structure CAS No.: 114784-59-7
Product category: Calmodulin
This product is for research use only, not for human use. We do not sell to patients.
Size Price
500mg
1g
Other Sizes
Official Supplier of:
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Product Description
E6 Berbamine is a strong antagonist of calmodulin (CaM) (Berbamine p-nitrobenzoate). E6 With a Ki of 0.95 μM, berbamine suppresses myosin light chain kinase (MLCK) activity that is dependent on calmodulin (CaM). In K562 cells, E6 Berbamine likewise demonstrates anti-leukemic activity, with an IC50 of 2.13 μM.
Biological Activity I Assay Protocols (From Reference)
Targets
CaM (calmodulin)
ln Vitro
The interaction of the berbamine compound E6 and calmodulin (CaM)-dependent myosin light chain kinase (MLCK) has been studied. The experimental results showed that the inhibition of MLCK activity was increased with increasing amounts of E6 and was overcome completely by the addition of excessive CaM. The stimulatory activity of MLCK induced by CaM was gradually inhibited by the increasing concentrations of compound E6, showing that the inhibition of MLCK activity by compound E6 was concentration dependent; and the Ki was 0.95 microM. Compound E6 diminished the fluorescence intensity of dansyl-labeled CaM and the intensity was increased gradually by the addition of different amounts of CaM. Compound E6 had no effect on the activity of MLCK fragments produced by limited trypsinization, and it is a novel and considerably potent calmodulin antagonist.[1]
References

[1]. Interaction of berbamine compound E6 and calmodulin-dependent myosin light chain kinase. Biochem Pharmacol. 1992 Oct 20;44(8):1543-7.

[2]. Berbamine derivatives: a novel class of compounds for anti-leukemia activity. Eur J Med Chem. 2009 Aug;44(8):3293-8.

Additional Infomation
Our previous research showed that berberine, a natural compound derived from the traditional Chinese medicine Berberis amurensis, can selectively induce apoptosis in imatinib (IM)-resistant K562 cell lines and Bcr/Abl-positive leukemia cells from patients with chronic myeloid leukemia (CML). In this study, we synthesized a series of novel berberine derivatives. These compounds exhibited high to extremely high activity in vitro. Compounds 2e, 2g, 3f, 3k, 3q, and 3u showed consistently high antitumor activity against imatinib-resistant K562 leukemia cells. Their IC50 values at 48 hours ranged from 0.36 to 0.55 μM, while the IC50 value of berberine was 8.9 μM. Cell cycle analysis results indicated that compound 3h reduced the proportion of cells in the G0/G1 phase. In particular, these compounds exhibited potent inhibition of the translocation of NF-κB p65 from the cytoplasm to the nucleus, and NF-κB p65 plays a crucial role in the survival of leukemia stem cells. These results suggest that berberine may be a good starting point for developing novel lead compounds to combat leukemia. [2]
These protocols are for reference only. InvivoChem does not independently validate these methods.
Physicochemical Properties
Molecular Formula
C44H43N3O9
Molecular Weight
757.83
Exact Mass
757.2999
CAS #
114784-59-7
PubChem CID
6610268
Appearance
Typically exists as solid at room temperature
Density
1.3±0.1 g/cm3
Index of Refraction
1.613
LogP
7.6
Hydrogen Bond Donor Count
0
Hydrogen Bond Acceptor Count
11
Rotatable Bond Count
6
Heavy Atom Count
56
Complexity
1320
Defined Atom Stereocenter Count
2
SMILES
O1C2C(=CC3CCN(C)[C@@H](CC4C=CC(=CC=4)OC4C(=CC=C(C=4)C[C@@H]4C5C1=C(C(=CC=5CCN4C)OC)OC)OC(C1C=CC(=CC=1)[N+](=O)[O-])=O)C=3C=2)OC
InChi Key
PUAVTDKYTXNVBU-OIDHKYIRSA-N
InChi Code
InChI=1S/C44H43N3O9/c1-45-18-16-29-23-37(51-3)39-25-33(29)34(45)20-26-6-13-32(14-7-26)54-38-22-27(8-15-36(38)56-44(48)28-9-11-31(12-10-28)47(49)50)21-35-41-30(17-19-46(35)2)24-40(52-4)42(53-5)43(41)55-39/h6-15,22-25,34-35H,16-21H2,1-5H3/t34-,35+/m0/s1
Chemical Name
[(1S,14R)-20,21,25-trimethoxy-15,30-dimethyl-7,23-dioxa-15,30-diazaheptacyclo[22.6.2.23,6.18,12.114,18.027,31.022,33]hexatriaconta-3(36),4,6(35),8,10,12(34),18,20,22(33),24,26,31-dodecaen-9-yl] 4-nitrobenzoate
Synonyms
E6 berbamine; 114784-59-7; CHEMBL405686; [(1S,14R)-20,21,25-trimethoxy-15,30-dimethyl-7,23-dioxa-15,30-diazaheptacyclo[22.6.2.23,6.18,12.114,18.027,31.022,33]hexatriaconta-3(36),4,6(35),8,10,12(34),18,20,22(33),24,26,31-dodecaen-9-yl] 4-nitrobenzoate; 3,4,4aS,5,16aR,17,18,19-octahydro-21,22,26-trimethoxy-4,17-dimethyl-16H-1,24:6,9-dietheno-11,15-metheno-2H-pyrido[2',3':17,18][1,11]dioxacycloeicosino[2,3,4-ij]isoquinolin-12-ol-4-nitrobenzoate; Bio1_000778; Calmodulin inhibitor; CBiol_002003;
Solubility Data
Preparing Stock Solutions 1 mg 5 mg 10 mg
1 mM 1.3196 mL 6.5978 mL 13.1956 mL
5 mM 0.2639 mL 1.3196 mL 2.6391 mL
10 mM 0.1320 mL 0.6598 mL 1.3196 mL

*Note: Please select an appropriate solvent for the preparation of stock solution based on your experiment needs. For most products, DMSO can be used for preparing stock solutions (e.g. 5 mM, 10 mM, or 20 mM concentration); some products with high aqueous solubility may be dissolved in water directly. Solubility information is available at the above Solubility Data section. Once the stock solution is prepared, aliquot it to routine usage volumes and store at -20°C or -80°C. Avoid repeated freeze and thaw cycles.

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