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GNE-0439

Cat No.:V73667 Purity: ≥98%
GNE-0439 is a new selective inhibitor of Nav1.7 with IC50 of 0.34 uM and inhibits Nav1.5 with IC50 of 38.3 μM.
GNE-0439
GNE-0439 Chemical Structure CAS No.: 1241902-40-8
Product category: Sodium Channel
This product is for research use only, not for human use. We do not sell to patients.
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1mg
5mg
10mg
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Product Description
GNE-0439 is a new selective inhibitor of Nav1.7 with IC50 of 0.34 uM and inhibits Nav1.5 with IC50 of 38.3 μM. GNE-0439 inhibits mutant N1742K channel in membrane potential assay (IC50=0.37 uM). GNE-0439 has a carboxylic acid group that binds outside the channel pore, unlike known selective VSD4 binders.
GNE-0439 is a novel, potent, and selective inhibitor of the Nav1.7 voltage-gated sodium channel, with an IC50 of 0.34 uM. It inhibits Nav1.5 with an IC50 of 38.3 microM, showing a 113-fold selectivity for Nav1.7. It binds outside the channel pore, a mechanism distinct from known VSD4 binders.
Biological Activity I Assay Protocols (From Reference)
Targets
IC50: 0.34 uM (Nav1.7)[1]
Nav1.7 (IC50 = 0.34 microM). Also inhibits Nav1.5 (IC50 = 38.3 microM) and the mutant N1742K channel (IC50 = 0.37 microM).
ln Vitro
GNE-0439 selectively inhibits Nav1.7 with an IC50 of 0.34 uM, showing 113-fold selectivity over Nav1.5 (IC50 = 38.3 uM). It also inhibits the mutant N1742K channel with an IC50 of 0.37 uM in membrane potential assays but is much less active against the R1608A mutation (IC50 >50 uM).
ln Vivo
No specific in vivo data is detailed in the search results. However, as a potent and selective Nav1.7 inhibitor, GNE-0439 would be expected to have analgesic effects in vivo and is likely being studied for this purpose.
Enzyme Assay
For binding assays, membrane potential-sensitive dyes are used. HEK293 cells expressing Nav1.7 channels are depolarized with veratridine. The test compound's ability to inhibit this depolarization is measured using a fluorescence plate reader. IC50 values are calculated from dose-response curves.
Cell Assay
HEK293 cells expressing human Nav1.7 channels are cultured in DMEM with 10% FBS. Whole-cell patch-clamp electrophysiology is performed to measure sodium currents. GNE-0439 is applied at varying concentrations (0.001-100 uM), and the reduction in current is measured to calculate the IC50.
Animal Protocol
In vivo, GNE-0439 is formulated in a suitable vehicle (e.g., 10% DMSO + 40% PEG300 + 5% Tween-80 + 45% saline) and administered to rodents via intraperitoneal or oral routes. Analgesic efficacy is assessed in models of pain, such as the formalin test or CFA-induced hyperalgesia.
ADME/Pharmacokinetics
No specific PK data is available. The compound has a molecular weight of 345.48 and is highly lipophilic (LogP = 6), which suggests high plasma protein binding, extensive tissue distribution, and likely low oral bioavailability. Its half-life and clearance are unknown.
Toxicity/Toxicokinetics
No specific toxicity data is available. The high lipophilicity (LogP = 6) and high protein binding suggest a risk of off-target toxicity. As a Nav1.7 inhibitor, the primary risk is loss of pain sensation, but this is the therapeutic goal. Off-target activity on cardiac Nav1.5 could cause arrhythmias.
References

[1]. Mechanism-specific assay design facilitates the discovery of Nav1.7-selective inhibitors. Proc Natl Acad Sci U S A. 2018 Jan 23;115(4):E792-E801.

Additional Infomation
GNE-0439 is a research tool for studying the role of Nav1.7 channels in pain signaling. Its unique binding mode (outside the pore) makes it a valuable tool for probing channel structure and function.
These protocols are for reference only. InvivoChem does not independently validate these methods.
Physicochemical Properties
Molecular Formula
C21H31NO3
Molecular Weight
345.475746393204
Exact Mass
345.23
CAS #
1241902-40-8
PubChem CID
92138726
Appearance
White to off-white solid powder
LogP
6
Hydrogen Bond Donor Count
2
Hydrogen Bond Acceptor Count
3
Rotatable Bond Count
7
Heavy Atom Count
25
Complexity
432
Defined Atom Stereocenter Count
1
SMILES
O=C(C1C=CC(=CC=1)C1CCC(CCC)CC1)N[C@H](C(=O)O)C(C)C
InChi Key
SKMKUWKJBZSEJH-RJYAGPCLSA-N
InChi Code
InChI=1S/C21H31NO3/c1-4-5-15-6-8-16(9-7-15)17-10-12-18(13-11-17)20(23)22-19(14(2)3)21(24)25/h10-16,19H,4-9H2,1-3H3,(H,22,23)(H,24,25)/t15?,16?,19-/m0/s1
Chemical Name
(2S)-3-methyl-2-[[4-(4-propylcyclohexyl)benzoyl]amino]butanoic acid
HS Tariff Code
2934.99.9001
Storage

Powder      -20°C    3 years

                     4°C     2 years

In solvent   -80°C    6 months

                  -20°C    1 month

Note: Please store this product in a sealed and protected environment, avoid exposure to moisture.
Shipping Condition
Room temperature (This product is stable at ambient temperature for a few days during ordinary shipping and time spent in Customs)
Solubility Data
Solubility (In Vitro)
DMSO: 130 mg/mL (376.29 mM)
Solubility (In Vivo)
Solubility in Formulation 1: ≥ 3.25 mg/mL (9.41 mM) (saturation unknown) in 10% DMSO + 40% PEG300 + 5% Tween80 + 45% Saline (add these co-solvents sequentially from left to right, and one by one), clear solution.
For example, if 1 mL of working solution is to be prepared, you can add 100 μL of 32.5 mg/mL clear DMSO stock solution to 400 μL of PEG300 and mix evenly; then add 50 μL of Tween-80 to the above solution and mix evenly; then add 450 μL of normal saline to adjust the volume to 1 mL.
Preparation of saline: Dissolve 0.9 g of sodium chloride in 100 mL ddH₂ O to obtain a clear solution.

Solubility in Formulation 2: ≥ 3.25 mg/mL (9.41 mM) (saturation unknown) in 10% DMSO + 90% (20% SBE-β-CD in Saline) (add these co-solvents sequentially from left to right, and one by one), clear solution.
For example, if 1 mL of working solution is to be prepared, you can add 100 μL of 32.5 mg/mL clear DMSO stock solution to 900 μL of 20% SBE-β-CD physiological saline solution and mix evenly.
Preparation of 20% SBE-β-CD in Saline (4°C,1 week): Dissolve 2 g SBE-β-CD in 10 mL saline to obtain a clear solution.

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Solubility in Formulation 3: ≥ 3.25 mg/mL (9.41 mM) (saturation unknown) in 10% DMSO + 90% Corn Oil (add these co-solvents sequentially from left to right, and one by one), clear solution.
For example, if 1 mL of working solution is to be prepared, you can add 100 μL of 32.5 mg/mL clear DMSO stock solution to 900 μL of corn oil and mix evenly.


 (Please use freshly prepared in vivo formulations for optimal results.)
Preparing Stock Solutions 1 mg 5 mg 10 mg
1 mM 2.8945 mL 14.4726 mL 28.9452 mL
5 mM 0.5789 mL 2.8945 mL 5.7890 mL
10 mM 0.2895 mL 1.4473 mL 2.8945 mL

*Note: Please select an appropriate solvent for the preparation of stock solution based on your experiment needs. For most products, DMSO can be used for preparing stock solutions (e.g. 5 mM, 10 mM, or 20 mM concentration); some products with high aqueous solubility may be dissolved in water directly. Solubility information is available at the above Solubility Data section. Once the stock solution is prepared, aliquot it to routine usage volumes and store at -20°C or -80°C. Avoid repeated freeze and thaw cycles.

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In vivo Formulation Calculator (Clear solution)
Step 1: Enter information below (Recommended: An additional animal to make allowance for loss during the experiment)
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Working concentration mg/mL;

Method for preparing DMSO stock solution mg drug pre-dissolved in μL DMSO (stock solution concentration mg/mL). Please contact us first if the concentration exceeds the DMSO solubility of the batch of drug.

Method for preparing in vivo formulation:Take μL DMSO stock solution, next add μL PEG300, mix and clarify, next addμL Tween 80, mix and clarify, next add μL ddH2O,mix and clarify.

(1) Please be sure that the solution is clear before the addition of next solvent. Dissolution methods like vortex, ultrasound or warming and heat may be used to aid dissolving.
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