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Phycocyanobilin (phycocyanin; phycocyanin)

Alias: phycocyanobilin; 20298-86-6; 3-[2-[[3-(2-carboxyethyl)-5-[(3-ethylidene-4-methyl-5-oxopyrrolidin-2-ylidene)methyl]-4-methyl-1H-pyrrol-2-yl]methylidene]-5-[(4-ethyl-3-methyl-5-oxopyrrol-2-yl)methylidene]-4-methylpyrrol-3-yl]propanoic acid; NCI60_011911
Cat No.:V72886 Purity: ≥98%
Phycocyanobilin is an orally bioactive antioxidant (reactive oxygen species) and an effective reactive oxygen species scavenger.
Phycocyanobilin (phycocyanin; phycocyanin)
Phycocyanobilin (phycocyanin; phycocyanin) Chemical Structure CAS No.: 20298-86-6
Product category: Reactive Oxygen Species
This product is for research use only, not for human use. We do not sell to patients.
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1mg
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Product Description
Phycocyanobilin is an orally bioactive antioxidant (reactive oxygen species) and an effective reactive oxygen species scavenger. Phycocyanobilin may be used in AD/Alzheimer's disease study.
Phycocyanobilin (PCB) is a linear open-chain tetrapyrrole chromophore and a bilirubin analog. It is the chromophore of the photosynthetic pigment phycocyanin. PCB is an orally bioactive antioxidant and anti-inflammatory agent that functions as an effective scavenger of reactive oxygen and nitrogen species (e.g., peroxynitrite, ONOO-). It inhibits NADPH oxidase activity and exhibits strong free radical scavenging properties comparable to natural bilirubin. PCB may be used in research for Alzheimer's disease (AD), cardiovascular protection, and neurological disorders.
Biological Activity I Assay Protocols (From Reference)
Targets
ROS/reactive oxygen species
Reactive Oxygen and Nitrogen Species (ROS/RNS); NADPH oxidase; Human Serum Albumin (HSA). Phycocyanobilin is a strong scavenger of various free radicals, including superoxide (O2•-), hydroxyl (•OH), and peroxynitrite (ONOO-). It binds to HSA with high affinity, which may impact its pharmacokinetics. It inhibits NADPH oxidase activity, thereby reducing the production of superoxide. Its antioxidant activity is structurally related to its conjugated double-bond system.
ln Vitro
Phycocyanobilin (100 μM; 0-250 min) prolongs the induction period by inhibiting methyl linoleate peroxidation [1]. The oxidation of liposomes is inhibited by phycocyanobilin (1 mM; 0-300 min) [1].
In vitro, Phycocyanobilin (PCB, 1-100 uM) effectively scavenges DPPH, ABTS, and superoxide radicals. It inhibits NADPH-dependent superoxide production in cultured renal mesangial cells. It also protects DNA from oxidative damage induced by peroxynitrite. PCB exhibits strong antioxidant effects in liposome oxidation assays (1 mM, 0-300 min). It has anti-inflammatory properties and can modulate cell signaling pathways related to oxidative stress. It is a high-affinity ligand for HSA.
ln Vivo
In type 2 diabetic mice, phycocyanobilin (15 mg/kg; po; in diet for 2 weeks) exhibits antioxidant properties[3].
In vivo, PCB is orally bioactive. In type 2 diabetic mice, oral administration of PCB (15 mg/kg in diet for 2 weeks) showed significant antioxidant effects. It reduces oxidative stress markers and improves cognitive function in animal models of Alzheimer's disease. It also exhibits cardioprotective and neuroprotective effects by scavenging ROS and reducing inflammation. Studies suggest it may cross the blood-brain barrier and protect against neurodegenerative diseases. It also inhibits NADPH oxidase in vivo.
Enzyme Assay
In vitro radical scavenging assays: For DPPH assay, mix PCB (0.5-50 uM) with DPPH (0.1 mM) and measure A517 nm after 30 min. For superoxide scavenging, use the xanthine/xanthine oxidase + NBT system. For peroxynitrite scavenging, use a fluorescence-based assay. These cell-free methods quantify the direct antioxidant capacity of PCB. Include standard antioxidants (e.g., Trolox, NAC) as positive controls. The strong conjugated tetrapyrrole structure absorbs UV-Vis light, which can be monitored directly.
Cell Assay
For cell culture studies, treat cells (e.g., neuronal SH-SY5Y, mesangial cells) with PCB (1-50 uM) for 24-72 hours. To induce oxidative stress, expose cells to H2O2 (100 uM) or glutamate (excitotoxicity). Measure cell viability by MTT/CCK-8. Measure intracellular ROS by DCFH-DA. Measure apoptosis by caspase-3/7 activity. PCB should reduce ROS, prevent mitochondrial membrane potential loss, and increase cell survival. It can also be used to study NADPH oxidase activity via lucigenin chemiluminescence.
Animal Protocol
Animal/Disease Models: Male C57BL/Ks J db/db mice, a rodent model for type 2 diabetes[3]
Doses: 15 mg/kg
Route of Administration: In diet for 2 weeks
Experimental Results: Dramatically diminished blood glucose levels. Normalized the increases in urinary 8 -OHdG and 8-epi-PGF2α levels, renal oxidative stress markers evaluated by renal 8-OHdG staining and DHE staining, Nox4 mRNA, and protein expression, as well as the mRNA levels of other NAD(P)H oxidase components, inflammatory markers and HO-1.
For Alzheimer's disease model: Administer PCB to transgenic AD mice (e.g., APP/PS1) orally via diet (15 mg/kg) for 4-8 weeks. Perform behavioral tests (Morris water maze, Y-maze) to assess memory and learning. Sacrifice animals and collect brain tissue. Measure amyloid-beta plaque burden via Thioflavin S staining. Measure oxidative stress markers (MDA, 8-OHdG) and antioxidant enzymes (SOD, GPx). PCB treatment should improve cognitive deficits and reduce neuroinflammation. For diabetes model: treat diabetic mice with PCB (15 mg/kg) for 2 weeks.
ADME/Pharmacokinetics
PCB has a molecular formula C33H3₈N4O₆ and a molecular weight of 586.68 g/mol. It is a purple/blue solid that is light-sensitive. Solubility: Poorly soluble in water; soluble in DMSO (≥10 mg/mL) and alkaline solutions. Storage: Store powder at -20degC, protected from light, under inert gas (argon or nitrogen) to prevent oxidation. In solution, store at -80degC in small aliquots to avoid freeze-thaw cycles. Stock solutions in DMSO are stable for up to 1 month at -80degC. Prepare fresh aqueous solutions for animal studies as it may precipitate in acidic conditions.
Toxicity/Toxicokinetics
PCB is generally regarded as safe (GRAS) for research use as it is a natural compound found in edible spirulina (blue-green algae). No significant acute toxicity has been reported at typical research doses (15-100 mg/kg in rodents). However, high doses may cause mild gastrointestinal distress or dark discoloration of feces. Standard safety precautions for handling fine chemical powders should be followed (gloves, lab coat, safety glasses). Not approved for human therapeutic use. Consult SDS.
References

[1]. Antioxidant activities of phycocyanobilin prepared from Spirulina platensis. Journal of Applied Phycology, 2000, 12: 435-439.

[2]. Nutraceutical and therapeutic potential of Phycocyanobilin for treating Alzheimer's disease. J Biosci. 2021;46:42.

[3]. Phycocyanin and phycocyanobilin from Spirulina platensis protect against diabetic nephropathy by inhibiting oxidative stress. Am J Physiol Regul Integr Comp Physiol. 2013 Jan 15;304(2):R110-20.

Additional Infomation
(3E)-phycocyanin is (2R)-phycocyanin. It is the conjugate acid of (3E)-phycocyanin (2-).
Phycocyanobilin is the chromophore of phycocyanin, the blue pigment in spirulina and other cyanobacteria. It is structurally similar to bilirubin (the human bile pigment) but with an open-chain tetrapyrrole structure. PCB is not a drug but a nutraceutical and research biochemical. It is being investigated for treating Alzheimer's disease, metabolic syndrome, and ischemia-reperfusion injury. Its poor oral bioavailability (due to low solubility) is a challenge being addressed by nanoparticle formulations. It is a potent inhibitor of NADPH oxidase and a direct radical scavenger.
These protocols are for reference only. InvivoChem does not independently validate these methods.
Physicochemical Properties
Molecular Formula
C33H38N4O6
Molecular Weight
586.68
Exact Mass
586.279
CAS #
20298-86-6
PubChem CID
20055378
Appearance
Blue to dark blue solid powder
Density
1.31±0.1 g/cm3
Boiling Point
892.1±65.0 °C
LogP
3.128
Hydrogen Bond Donor Count
5
Hydrogen Bond Acceptor Count
7
Rotatable Bond Count
10
Heavy Atom Count
43
Complexity
1460
Defined Atom Stereocenter Count
1
SMILES
CCC1=C(C(=NC1=O)/C=C\2/C(=C(/C(=C/C3=C(C(=C(N3)/C=C\4/C(=C/C)/[C@H](C(=O)N4)C)C)CCC(=O)O)/N2)CCC(=O)O)C)C
InChi Key
NNMALANKTSRILL-GSZAROSWSA-N
InChi Code
InChI=1S/C33H38N4O6/c1-7-20-19(6)32(42)37-27(20)14-25-18(5)23(10-12-31(40)41)29(35-25)15-28-22(9-11-30(38)39)17(4)24(34-28)13-26-16(3)21(8-2)33(43)36-26/h7,13-15,19,34-35H,8-12H2,1-6H3,(H,37,42)(H,38,39)(H,40,41)/b20-7+,24-13-,27-14-,28-15-/t19-/m1/s1
Chemical Name
3-[(2Z,5Z)-2-[[3-(2-carboxyethyl)-5-[(Z)-[(3E,4R)-3-ethylidene-4-methyl-5-oxopyrrolidin-2-ylidene]methyl]-4-methyl-1H-pyrrol-2-yl]methylidene]-5-[(4-ethyl-3-methyl-5-oxopyrrol-2-yl)methylidene]-4-methylpyrrol-3-yl]propanoic acid
Synonyms
phycocyanobilin; 20298-86-6; 3-[2-[[3-(2-carboxyethyl)-5-[(3-ethylidene-4-methyl-5-oxopyrrolidin-2-ylidene)methyl]-4-methyl-1H-pyrrol-2-yl]methylidene]-5-[(4-ethyl-3-methyl-5-oxopyrrol-2-yl)methylidene]-4-methylpyrrol-3-yl]propanoic acid; NCI60_011911
HS Tariff Code
2934.99.9001
Storage

Powder      -20°C    3 years

                     4°C     2 years

In solvent   -80°C    6 months

                  -20°C    1 month

Note: This product requires protection from light (avoid light exposure) during transportation and storage.
Shipping Condition
Room temperature (This product is stable at ambient temperature for a few days during ordinary shipping and time spent in Customs)
Solubility Data
Solubility (In Vitro)
DMSO: < 1 mg/mL
Solubility (In Vivo)
Solubility in Formulation 1: 1 mg/mL (1.70 mM) in PBS (add these co-solvents sequentially from left to right, and one by one), suspension solution; with sonication (<60°C).

 (Please use freshly prepared in vivo formulations for optimal results.)
Preparing Stock Solutions 1 mg 5 mg 10 mg
1 mM 1.7045 mL 8.5225 mL 17.0451 mL
5 mM 0.3409 mL 1.7045 mL 3.4090 mL
10 mM 0.1705 mL 0.8523 mL 1.7045 mL

*Note: Please select an appropriate solvent for the preparation of stock solution based on your experiment needs. For most products, DMSO can be used for preparing stock solutions (e.g. 5 mM, 10 mM, or 20 mM concentration); some products with high aqueous solubility may be dissolved in water directly. Solubility information is available at the above Solubility Data section. Once the stock solution is prepared, aliquot it to routine usage volumes and store at -20°C or -80°C. Avoid repeated freeze and thaw cycles.

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Method for preparing in vivo formulation:Take μL DMSO stock solution, next add μL PEG300, mix and clarify, next addμL Tween 80, mix and clarify, next add μL ddH2O,mix and clarify.

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