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KI-DX-014

Cat No.:V138439 Purity: ≥98%
KI-DX-014 is a DDX21 inhibitor with high RNA binding inhibitory activity (IC50 of 3.31 μM).
KI-DX-014
KI-DX-014 Chemical Structure CAS No.: 1309288-83-2
Product category: ATP Synthase
This product is for research use only, not for human use. We do not sell to patients.
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Product Description
KI-DX-014 is a DDX21 inhibitor with high RNA binding inhibitory activity (IC50 of 3.31 μM). KI-DX-014 targets the inherently disordered C-terminal domain of DDX21, inhibiting the interaction between DDX21 and RNA, regulating the RNA-dependent ATPase activity of DDX21, and disrupting the formation of DDX21 biomolecule condensates. KI-DX-014 attenuates the release of P-TEFb from the 7SK snRNP complex in vitro, inhibits P-TEFb-dependent RNA polymerase II CTD phosphorylation, and induces developmental defects in zebrafish embryos. KI-DX-014 can be used as a chemical probe to elucidate the function of DDX21 under normal physiological and disease states. KI-DX-014 can be used in research on cancer and neurodegenerative diseases.
Biological Activity I Assay Protocols (From Reference)
ln Vitro
KI-DX-014 (pre-incubated with DDX21-FL for 30 minutes at room temperature, then incubated with RNA for 1 hour at room temperature) inhibited the interaction of full-length DDX21 with 7SK-SL4 RNA and 7SK-SL1 RNA, with IC50 values of 3.31 μM and 3.79 μM, respectively [1]. KI-DX-014 inhibited the interaction of DDX21-HC+CTD with 7SK-SL4 RNA, with an IC50 value of 10.28 μM [1]. KI-DX-014 inhibited the interaction of DDX21-CTD with 7SK-SL4 RNA, with an IC50 value of 13.64 μM [1]. KI-DX-014 (10-100 μM; 1 hour) at concentrations of 10, 50, and 100 μM attenuated the ATPase activity of full-length DDX21 stimulated by 7SK-SL4 in a dose-dependent manner [1]. KI-DX-014 (10–100 μM; 1 h) at concentrations of 10, 50, and 100 μM at dose-dependent concentrations at which the ATPase activity of full-length DDX21 stimulated by U15 was attenuated[1]. KI-DX-014 (10–100 μM; 30 cycles at 4 °C (1 min on, 3 min off)) at concentrations of 10, 50, and 100 μM at dose-dependent concentrations at which the release of P-TEFb from the 7SK snRNP complex was inhibited from DDX21 at dose-dependent concentrations at which the release was attenuated[1].
ln Vivo
KI-DX-014 (2.5-10 μM; microinjection; single-cell single-dose) can induce dose-dependent developmental defects and reduce phosphorylation of RNA polymerase II CTD serine 2 and serine 5 in zebrafish embryos by inhibiting DDX21-dependent P-TEFb release [1].
Animal Protocol
Animal/Disease Models:Zebrafish embryos (wild-type, 1-2 cell stage) [1]
Dose: 2.5 μM; 5 μM; 10 μM<
Route of Administration: Microinjection; single administration at 1 cell stage
Experimental Results: Dose-dependent larval deformities, including body curvature and facial developmental defects, were induced. The survival rate of embryos in the treated group was slightly lower at 24 hours post-fertilization compared to the vector control group. A dose-dependent decrease in the phosphorylation levels of RNA polymerase II CTD serine 2 and serine 5 was detected by Western blot.
References

[1]. Chemical Probe Discovery for DEAD-Box RNA-Binding Protein DDX21 Using Small-Molecule Microarrays. ACS Chem Biol. 2025;20(8):1928-1938.

These protocols are for reference only. InvivoChem does not independently validate these methods.
Physicochemical Properties
Molecular Formula
C17H22N4O3
Molecular Weight
330.38
CAS #
1309288-83-2
Appearance
Colorless to light yellow oil
SMILES
COC1=CC=C(C=C1)N2N=CC(CN3CCC(C(O)=O)(C3)N)=C2C
HS Tariff Code
2934.99.9001
Storage

Powder      -20°C    3 years

                     4°C     2 years

In solvent   -80°C    6 months

                  -20°C    1 month

Note: 请将本产品存放在密封保护的环境中,避免受潮。
Shipping Condition
Room temperature (This product is stable at ambient temperature for a few days during ordinary shipping and time spent in Customs)
Solubility Data
Solubility (In Vitro)
DMSO : ~100 mg/mL (~302.68 mM; with sonication)
H2O : ~100 mg/mL (~302.68 mM; with sonication)
Solubility (In Vivo)
Solubility in Formulation 1: ≥ 2.5 mg/mL (7.57 mM) (saturation unknown) in 10% DMSO + 40% PEG300 + 5% Tween-80 + 45% Saline (add these co-solvents sequentially from left to right, and one by one), Clear solution.
For example, if 1 mL of working solution is to be prepared, you canAdd 100 μL of DMSO stock solution (25.0 mg/mL) to 400 μL of PEG300 and mix well; then add 50 μL of Tween-80 and mix well; finally add 450 μL of physiological saline and adjust the volume to 1 mL. Preparation of physiological saline: Dissolve 0.9 g of sodium chloride in double-distilled water and dilute to 100 mL to obtain clear physiological saline.
Preparation of saline: Dissolve 0.9 g of sodium chloride in 100 mL ddH₂ O to obtain a clear solution.

Solubility in Formulation 2: ≥ 2.5 mg/mL (7.57 mM) (saturation unknown) in 10% DMSO + 90% (20% SBE-β-CD in Saline) (add these co-solvents sequentially from left to right, and one by one), Clear solution.
For example, if 1 mL of working solution is to be prepared, you canAdd 100 μL of DMSO stock solution (25.0 mg/mL) to 900 μL of 20% SBE-β-CD saline and mix well. Preparation of 20% SBE-β-CD saline (4°C, store for one week): Dissolve 2 g of SBE-β-CD powder in 10 mL of saline until completely dissolved and clear.
Preparation of 20% SBE-β-CD in Saline (4°C,1 week): Dissolve 2 g SBE-β-CD in 10 mL saline to obtain a clear solution.

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Solubility in Formulation 3: ≥ 2.5 mg/mL (7.57 mM)(saturation unknown) in 10% DMSO + 90% Corn Oil (add these co-solvents sequentially from left to right, and one by one), Clear solution.
For example, if 1 mL of working solution is to be prepared, you canAdd 100 μL of DMSO stock solution (25.0 mg/mL) to 900 μL of corn oil and mix well.


 (Please use freshly prepared in vivo formulations for optimal results.)
Preparing Stock Solutions 1 mg 5 mg 10 mg
1 mM 3.0268 mL 15.1341 mL 30.2682 mL
5 mM 0.6054 mL 3.0268 mL 6.0536 mL
10 mM 0.3027 mL 1.5134 mL 3.0268 mL

*Note: Please select an appropriate solvent for the preparation of stock solution based on your experiment needs. For most products, DMSO can be used for preparing stock solutions (e.g. 5 mM, 10 mM, or 20 mM concentration); some products with high aqueous solubility may be dissolved in water directly. Solubility information is available at the above Solubility Data section. Once the stock solution is prepared, aliquot it to routine usage volumes and store at -20°C or -80°C. Avoid repeated freeze and thaw cycles.

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An example of molarity calculation using the molarity calculator is shown below:
What is the mass of compound required to make a 10 mM stock solution in 5 ml of DMSO given that the molecular weight of the compound is 350.26 g/mol?
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  • The answer of 17.513 mg appears in the Mass box. In a similar way, you may calculate the volume and concentration.

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What volume of a given 10 mM stock solution is required to make 25 ml of a 25 μM solution?
Using the equation C1V1 = C2V2, where C1=10 mM, C2=25 μM, V2=25 ml and V1 is the unknown:
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Note: Chemical formula is case sensitive: C12H18N3O4  c12h18n3o4
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In vivo Formulation Calculator (Clear solution)
Step 1: Enter information below (Recommended: An additional animal to make allowance for loss during the experiment)
Step 2: Enter in vivo formulation (This is only a calculator, not the exact formulation for a specific product. Please contact us first if there is no in vivo formulation in the solubility section.)
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Calculation results

Working concentration mg/mL;

Method for preparing DMSO stock solution mg drug pre-dissolved in μL DMSO (stock solution concentration mg/mL). Please contact us first if the concentration exceeds the DMSO solubility of the batch of drug.

Method for preparing in vivo formulation:Take μL DMSO stock solution, next add μL PEG300, mix and clarify, next addμL Tween 80, mix and clarify, next add μL ddH2O,mix and clarify.

(1) Please be sure that the solution is clear before the addition of next solvent. Dissolution methods like vortex, ultrasound or warming and heat may be used to aid dissolving.
             (2) Be sure to add the solvent(s) in order.

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