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PQR-530

Alias: PQR-530; PQR-0530; PQR 530; PQR 0530; PQR530; PQR0530
Cat No.:V4756 Purity: ≥98%
PQR-530 is a novel, potent, orally bioavailable and brain-penetrant dual pan-PI3K/mTORC1/2inhibitor, it exhibits antitumor activity.
PQR-530
PQR-530 Chemical Structure CAS No.: 1927857-61-1
Product category: New7
This product is for research use only, not for human use. We do not sell to patients.
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Purity & Quality Control Documentation

Purity: ≥98%

Product Description

PQR-530 is a novel, potent, orally bioavailable and brain-penetrant dual pan-PI3K/mTORC1/2 inhibitor, it exhibits antitumor activity. PQR530 inhibited protein kinase B (PKB, pSer473) and ribosomal protein S6 (pS6, pSer235/236) phosphorylation with IC50 values of 0.07 µM. PQR530 showed excellent selectivity over a wide panel of kinases, as well as excellent selectivity versus unrelated receptor enzymes and ion channels. Moreover, PQR530 displayed potency in a panel of 44 cancer cell lines (NTRC OncolinesTM) to prevent cancer cell growth (mean value for GI50 of 426 nM). Oral application of PQR530 to mice resulted in a dose-proportional PK and demonstrated good oral bioavailability and excellent brain penetration.

Biological Activity I Assay Protocols (From Reference)
Targets
Dual pan-class I PI3K and mTOR kinase inhibitor. (Kd for PI3Kα = 0.84 nM, mTOR = 0.33 nM; Ki for PI3Kα = 11.1 nM, mTOR = 7.4 nM). [2]
ln Vitro
Strong oral dual pan-PI3K/mTORC1/2 inhibitor with anti-tumor action, PQR-530 penetrates the brain. PQR-530 inhibits mTOR complex C1/2 and all PI3K isoforms with great potency and selectivity. With an IC50 value of 0.07 µM, PQR-530 suppresses the phosphorylation of ribosomal protein S6 (pS6, pSer235/236) and protein kinase B (PKB, pSer473) in A2058 melanoma cells. With an average GI50 of 426 nM, PQR-530 has inhibitory efficacy against the development of 44 cancer cell lines[1].
PQR530 potently inhibited cellular PI3K/mTOR signaling in A2058 melanoma cells, with IC50 values of 62.2 nM for phosphorylation of PKB/Akt (Ser473) and 61.9 nM for phosphorylation of ribosomal protein S6 (Ser235/236). [2]
In a panel of 66 cancer cell lines, PQR530 exhibited a mean half-maximal growth inhibition (GI50) of 0.43 µM. The compound acted primarily cytostatically, with cytotoxicity (LD50) observed in only about 10% of cell lines at concentrations well above the GI50. [2]
The cellular sensitivity profiles of PQR530 and the dual PI3K/mTOR inhibitor GDC-0980 (3) across 44 tumor cell lines showed good overall correlation. [2]
Compared to the pan-PI3K inhibitor PQR309 (5), PQR530 showed increased potency (2.5- to 3-fold lower average GI50 and IC50) in growth inhibition across cell lines, attributed to its enhanced mTOR inhibition. [2]
In A2058 and SKOV3 cells, PQR530 effectively suppressed phosphorylation of downstream targets including PKB/Akt, GSK3β, p70S6K, and S6, confirming its dual pathway blockade. [2]
ln Vivo
In an OVCAR-3 human ovarian cancer xenograft model in BALB/c nude mice, daily oral administration of PQR530 (25 mg/kg, QD) starting from day 17 post-inoculation significantly inhibited tumor growth compared to the vehicle control group. No significant body weight loss was observed in the treatment group. [2]
Enzyme Assay
The binding affinity (Ki) of compounds for PI3Kα and mTOR was determined using a time-resolved Förster resonance energy transfer (TR-FRET) assay. For PI3Kα, a His-tagged recombinant protein was used with a biotinylated anti-His antibody and europium-labeled streptavidin. The tracer was an AlexaFluor647-labeled kinase tracer. The assay buffer contained HEPES, MgCl2, EGTA, and a detergent. [2]
For mTOR, a truncated GST-fusion protein was used with a europium-labeled anti-GST antibody. The assay buffer contained HEPES, MgCl2, EGTA, and Pluronic F-127. Inhibitor Ki values were calculated from dose-response curves. [2]
The selectivity profile over a wide range of kinases was assessed using a commercial kinase binding panel (KINOMEScan). Compounds were tested at a single concentration (10 µM) or in dose-response to determine binding constants. Selectivity scores S(35) and S(10) were calculated based on the fraction of kinases with activity reduced below 35% or 10% of control, respectively. [2]
Cell Assay
Cellular potency for inhibiting PI3K/mTOR signaling was analyzed using an In-Cell Western assay. Cells (e.g., A2058, SKOV3) were seeded in 96-well plates, treated with inhibitors for 1 hour, then fixed. Phosphorylation of PKB/Akt on Ser473 and ribosomal S6 on Ser235/236 was detected using specific primary antibodies. Cellular tubulin was used as a loading control, detected with a mouse anti-α-tubulin antibody. Fluorescent secondary antibodies were used, and signals were quantified using an infrared imaging scanner. The percentage of remaining phospho-substrate signal was normalized to tubulin. [2]
Cell proliferation assays were performed by seeding cells in 96-well plates 24 hours before treatment. Inhibitors were added at indicated concentrations for 72 hours. Cells were then fixed, stained with Hoechst 33324, and nuclei were counted using a high-content imaging system. Dose-response curves were generated to calculate GI50 and LD50 values. [2]
For a larger cell panel (66 cancer cell lines), cells were exposed to serial dilutions of PQR530 for 72 hours, and viability was assessed using a luminescence-based assay. GI50 and LD50 values were calculated by nonlinear regression fitting of the dose-response data. [2]
Animal Protocol
For pharmacokinetic studies in male C57BL/6J mice, PQR530 was formulated by first dissolving in DMSO, then adding an aqueous solution of hydroxypropyl-β-cyclodextrin to achieve the final dosing solution. A single oral dose of 50 mg/kg was administered. Blood plasma, brain, and thigh muscle tissues were collected at various time points. Drug concentrations were quantified using liquid chromatography-tandem mass spectrometry (LC-MS/MS). Pharmacokinetic parameters (Cmax, Tmax, t1/2, AUC, Cl) were calculated. [2]
For the OVCAR-3 xenograft efficacy study, female BALB/c nude mice were inoculated subcutaneously with tumor cells. When the mean tumor volume reached approximately 157 mm³ (day 17), mice were randomized into groups. The treatment group received PQR530 at 25 mg/kg orally, once daily (QD). The control group received vehicle. Body weight and tumor dimensions (measured by caliper) were monitored multiple times per week. Tumor volume was calculated. The study was terminated on day 45, and excised tumors were weighed. [2]
ADME/Pharmacokinetics
PQR530 exhibits high in vitro metabolic stability in liver microsomes of humans, rats, dogs, and mice, with >73% of the compound remaining after 30 minutes. [2] In hepatocyte cultures of the same animals, its intrinsic clearance is low, with a half-life of 142 to 250 minutes. The half-life in human hepatocytes is approximately 4.2 hours. [2] In male C57BL/6J mice, PQR530 showed good oral bioavailability after a single oral dose of 50 mg/kg. The maximum concentrations (Cmax) in plasma, brain, and muscle were reached in 0.5 hours (Tmax). The plasma half-life (t1/2) was approximately 4.7 hours. [2] It has excellent brain permeability, with higher concentrations in brain tissue than in plasma (brain/plasma distribution ratio based on Cmax and AUC is approximately 1.67). [2] Permeability assays (PAMPA, MDCK) showed that the compound has a rapid passive diffusion capability. This compound is not a substrate for P-glycoprotein transport. [2]
In brain tissue binding assays, the free fraction (fu) of this compound was approximately 8%. [2]
Toxicity/Toxicokinetics
In a wide-range off-target effect analysis (CEREP BioPrint) at a concentration of 10 µM, PQR530 exhibited very weak competitive effects against receptors, channels, transporters, and enzymes, indicating good safety. [2]
Preliminary toxicity studies in rats and dogs determined the no-observed adverse effect dose (NOAEL). In Wistar rats, the NOAEL was 1 mg/kg/day for males and 0.5 mg/kg/day for females. In beagles, the NOAEL was 1 mg/kg/day for males and 3 mg/kg/day for females. [2]
Observed side effects were consistent with the mechanism of action (PI3K/mTOR inhibition), including transient increases in plasma glucose and insulin levels in mice after administration. [2]
References

[1]. Abstract 140: Discovery and biological evaluation of PQR530, a highly potent dual pan-PI3K/mTORC1/2 inhibitor. Cancer Res 2017;77(13 Suppl).

[2]. (S)-4-(Difluoromethyl)-5-(4-(3-methylmorpholino)-6-morpholino-1,3,5-triazin-2-yl)pyridin-2-amine (PQR530), a Potent, Orally Bioavailable, and Brain-Penetrable Dual Inhibitor of Class I PI3K and mTOR Kinase. J Med Chem. 2019;62(13):6241-62.

Additional Infomation
PQR530 is a dual ATP-competitive inhibitor that can penetrate the blood-brain barrier, developed based on a structure-activity relationship (SAR) study of PQR309. It contains a (S)-3-methylmorpholine group and a 4-difluoromethylpyridine moiety, which contributes to its enhanced affinity for mTOR and gives it superior physicochemical properties that facilitate penetration of the blood-brain barrier. [2]
Its binding mode was elucidated by molecular modeling and X-ray crystallography (PDB ID: 6OAC), confirming its interaction with the ATP-binding pocket of PI3Kα. [2]
This compound is considered a clinical candidate for cancer treatment, particularly for cancers that require penetration of the blood-brain barrier. [2]
These protocols are for reference only. InvivoChem does not independently validate these methods.
Physicochemical Properties
Molecular Formula
C18H23F2N7O2
Molecular Weight
407.417729616165
Exact Mass
407.188
CAS #
1927857-61-1
PubChem CID
121334433
Appearance
Light yellow to yellow solid powder
Density
1.338±0.06 g/cm3
LogP
1.4
Hydrogen Bond Donor Count
1
Hydrogen Bond Acceptor Count
11
Rotatable Bond Count
4
Heavy Atom Count
29
Complexity
528
Defined Atom Stereocenter Count
1
SMILES
C[C@H]1COCCN1C2=NC(=NC(=N2)N3CCOCC3)C4=CN=C(C=C4C(F)F)N
InChi Key
SYKBZXMKAPICSO-NSHDSACASA-N
InChi Code
InChI=1S/C18H23F2N7O2/c1-11-10-29-7-4-27(11)18-24-16(13-9-22-14(21)8-12(13)15(19)20)23-17(25-18)26-2-5-28-6-3-26/h8-9,11,15H,2-7,10H2,1H3,(H2,21,22)/t11-/m0/s1
Chemical Name
(S)-4-(difluoromethyl)-5-(4-(3-methylmorpholino)-6-morpholino-1,3,5-triazin-2-yl)pyridin-2-amine
Synonyms
PQR-530; PQR-0530; PQR 530; PQR 0530; PQR530; PQR0530
HS Tariff Code
2934.99.9001
Storage

Powder      -20°C    3 years

                     4°C     2 years

In solvent   -80°C    6 months

                  -20°C    1 month

Shipping Condition
Room temperature (This product is stable at ambient temperature for a few days during ordinary shipping and time spent in Customs)
Solubility Data
Solubility (In Vitro)
DMSO : ~33.33 mg/mL (~81.81 mM)
Solubility (In Vivo)
Solubility in Formulation 1: 2.5 mg/mL (6.14 mM) in 10% DMSO + 40% PEG300 + 5% Tween80 + 45% Saline (add these co-solvents sequentially from left to right, and one by one), suspension solution; with sonication.
For example, if 1 mL of working solution is to be prepared, you can add 100 μL of 25.0 mg/mL clear DMSO stock solution to 400 μL PEG300 and mix evenly; then add 50 μL Tween-80 to the above solution and mix evenly; then add 450 μL normal saline to adjust the volume to 1 mL.
Preparation of saline: Dissolve 0.9 g of sodium chloride in 100 mL ddH₂ O to obtain a clear solution.

Solubility in Formulation 2: ≥ 2.5 mg/mL (6.14 mM) (saturation unknown) in 10% DMSO + 90% (20% SBE-β-CD in Saline) (add these co-solvents sequentially from left to right, and one by one), clear solution.
For example, if 1 mL of working solution is to be prepared, you can add 100 μL of 25.0 mg/mL clear DMSO stock solution to 900 μL of 20% SBE-β-CD physiological saline solution and mix evenly.
Preparation of 20% SBE-β-CD in Saline (4°C,1 week): Dissolve 2 g SBE-β-CD in 10 mL saline to obtain a clear solution.

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Solubility in Formulation 3: ≥ 2.5 mg/mL (6.14 mM) (saturation unknown) in 10% DMSO + 90% Corn Oil (add these co-solvents sequentially from left to right, and one by one), clear solution.
For example, if 1 mL of working solution is to be prepared, you can add 100 μL of 25.0 mg/mL clear DMSO stock solution to 900 μL of corn oil and mix evenly.


 (Please use freshly prepared in vivo formulations for optimal results.)
Preparing Stock Solutions 1 mg 5 mg 10 mg
1 mM 2.4545 mL 12.2723 mL 24.5447 mL
5 mM 0.4909 mL 2.4545 mL 4.9089 mL
10 mM 0.2454 mL 1.2272 mL 2.4545 mL

*Note: Please select an appropriate solvent for the preparation of stock solution based on your experiment needs. For most products, DMSO can be used for preparing stock solutions (e.g. 5 mM, 10 mM, or 20 mM concentration); some products with high aqueous solubility may be dissolved in water directly. Solubility information is available at the above Solubility Data section. Once the stock solution is prepared, aliquot it to routine usage volumes and store at -20°C or -80°C. Avoid repeated freeze and thaw cycles.

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What volume of a given 10 mM stock solution is required to make 25 ml of a 25 μM solution?
Using the equation C1V1 = C2V2, where C1=10 mM, C2=25 μM, V2=25 ml and V1 is the unknown:
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Note: Chemical formula is case sensitive: C12H18N3O4  c12h18n3o4
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In vivo Formulation Calculator (Clear solution)
Step 1: Enter information below (Recommended: An additional animal to make allowance for loss during the experiment)
Step 2: Enter in vivo formulation (This is only a calculator, not the exact formulation for a specific product. Please contact us first if there is no in vivo formulation in the solubility section.)
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Calculation results

Working concentration mg/mL;

Method for preparing DMSO stock solution mg drug pre-dissolved in μL DMSO (stock solution concentration mg/mL). Please contact us first if the concentration exceeds the DMSO solubility of the batch of drug.

Method for preparing in vivo formulation:Take μL DMSO stock solution, next add μL PEG300, mix and clarify, next addμL Tween 80, mix and clarify, next add μL ddH2O,mix and clarify.

(1) Please be sure that the solution is clear before the addition of next solvent. Dissolution methods like vortex, ultrasound or warming and heat may be used to aid dissolving.
             (2) Be sure to add the solvent(s) in order.

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