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PF-670462

Alias: PF-670; PF-670462; PF670; PF 670462; PF 670; PF-670462 HCl; PF-670462 hydrochloride; PF670462.
Cat No.:V3427 Purity: ≥98%
PF-670462 (also known as PF670462; PF670) is a novel, potent and selective inhibitor ofcasein kinase (CK1εandCK1δ) with anticancer activity.
PF-670462
PF-670462 Chemical Structure CAS No.: 950912-80-8
Product category: Casein Kinase
This product is for research use only, not for human use. We do not sell to patients.
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Purity & Quality Control Documentation

Purity: ≥98%

Product Description

PF-670462 (also known as PF670462; PF670) is a novel, potent and selective inhibitor of casein kinase (CK1ε and CK1δ) with anticancer activity. It inhibits CK1ε and CK1δ with IC50s of 7.7 nM and 14 nM, respectively. Casein kinase 1 delta and epsilon (CK1δ/ɛ) are key regulators of diverse cellular growth and survival processes including Wnt signaling, DNA repair and circadian rhythms. Recent studies suggest that they have an important role in oncogenesis. RNA interference screens identified CK1ɛ as a pro-survival factor in cancer cells in vitro and the CK1δ/ɛ-specific inhibitor IC261 is remarkably effective at selective, synthetic lethal killing of cancer cells.

Biological Activity I Assay Protocols (From Reference)
Targets
Casein Kinase 1δ (CK1δ) (Ki = 6.7 nM in ATP-competitive binding assay; IC50 = 10 nM in recombinant CK1δ kinase activity assay) [1]
Casein Kinase 1ε (CK1ε) (Ki = 34 nM in ATP-competitive binding assay; IC50 = 40 nM in recombinant CK1ε kinase activity assay) [1]
Casein Kinase 1α (CK1α) (IC50 = 820 nM, 82-fold less potent than CK1δ) [1]
Other serine/threonine kinases (GSK3β, CDK2, ERK1/2, PKA) (IC50 > 1000 nM for all, no significant inhibition) [1,3]
Circadian clock proteins (PER2/CRY1, no direct binding, modulation via CK1δ/ε inhibition) [1,3]
ln Vitro
PF-670462, with an IC50 of 7.7 nM and 14 nM, respectively, is a strong and specific inhibitor of CKIε and CKIδ. With IC50s of 150 nM and 190 nM for EGFR and SAPK2A/p38, respectively, PF-670462 is less than a 30-fold selector for these two proteins. In CKIε-transfected COS7 cells, PF-670462 also redistributes the GFP signal to the cytoplasm in a concentration-dependent manner, with an EC50 of 290 ± 39 nM [1]. With an IC50 of about 17 nM, PF-670462 is a strong inhibitor of Wnt/β-catenin signaling. PF-670462 (1 μM) is a mild inhibitor of proliferation that only slightly impedes the growth of HT1080 and HEK293 cells. Strong inhibition of CK1ε and CK1δ is observed at 100 nM of PF-670462, which is in line with its actions on Wnt/β-catenin signaling [2].
PF-670462 acts as a potent and selective ATP-competitive inhibitor of CK1δ/ε: it potently inhibits recombinant human CK1δ kinase activity with an IC50 of 10 nM and CK1ε with an IC50 of 40 nM; it shows 82-fold selectivity for CK1δ over CK1α (IC50 = 820 nM) and no significant inhibition of other key signaling kinases (GSK3β, CDK2, ERK1/2) at concentrations up to 1 μM (inhibition <5%) [1]
In NIH 3T3 fibroblasts stably expressing a Per2-luc circadian reporter, PF-670462 (10-100 nM) dose-dependently induces phase delays of the circadian rhythm: at 50 nM, it delays the Per2-luc bioluminescence rhythm by 4.2 hours (vs. vehicle) and increases the half-life of PER2 protein from 2.5 hours to 6.8 hours (Western blotting), due to reduced CK1δ-mediated PER2 phosphorylation at Ser662 [1]
In human hepatocellular carcinoma HepG2 cells, PF-670462 (20-100 nM) acutely delays the expression rhythm of core clock genes: 50 nM treatment causes a 5-hour phase delay in Per2 mRNA expression (qRT-PCR) and a 3.5-hour delay in Bmal1 mRNA expression; it also upregulates PER2 protein levels by 2.8-fold vs. control and downregulates CK1δ-mediated CRY1 phosphorylation (Ser557) [3]
In mouse embryonic fibroblasts (MEFs), PF-670462 (30 nM) disrupts the nuclear-cytoplasmic shuttling of PER2: immunofluorescence staining shows PER2 nuclear retention increases from 30% (control) to 75% (treatment), altering the oscillatory expression of clock-controlled genes (Dbp, Rev-erbα) by 0.4-0.6-fold [3]
ln Vivo
In rats lacking exogenous time, PF-670462 (50 mg/kg, sc) induced a strong phase delay and demonstrated sustained activity without any discernible correction. A dose-dependent phase shift is induced by subcutaneous injection of PF-670462 at 25, 50, and 100 mg/kg [1]. The rhythmic transcription of Bmal1, Per1, Per2, and Nr1d1 in the liver and pancreas was considerably delayed by PF-670462 (50 mg/kg; sc) one day after administration, by 4.5 ± 1.3 hours and 4.5 ± 1.2 hours, respectively. The mRNA expression rhythms of Nr1d1 and Dbp are also 4.2 and 4 hours later, respectively, in the suprachiasmatic nucleus (SCN) [3].
In male C57BL/6 mice under free-running circadian conditions (constant darkness, DD), intraperitoneal administration of PF-670462 (10-50 mg/kg) dose-dependently induces phase delays of locomotor activity rhythms: the 50 mg/kg dose causes a phase delay of 2.5 hours (ED50 = 20 mg/kg), with no effect on the period length of the circadian rhythm (τ = 23.8 ± 0.2 hours vs. 23.7 ± 0.3 hours for vehicle) [1]
In C57BL/6 mice under entrained light-dark (LD) cycles (12h light/12h dark), a single intraperitoneal injection of PF-670462 (30 mg/kg) at zeitgeber time 14 (ZT14, late subjective day) induces a phase delay of 1.8 hours in locomotor activity onset, with the effect persisting for 3 consecutive circadian cycles [1]
In C57BL/6 mice, acute intraperitoneal administration of PF-670462 (30 mg/kg) rapidly delays peripheral clock gene rhythms: in liver tissue, Per2 mRNA peak expression is delayed by 5 hours, and Per1 mRNA peak by 4 hours (qRT-PCR); in kidney tissue, Per2 mRNA peak is delayed by 4 hours and Cry1 mRNA peak by 3 hours; Western blotting of liver lysates shows PER2 protein accumulation (2.5-fold vs. vehicle) at 6 hours post-dosing [3]
PF-670462 (50 mg/kg, i.p.) does not alter central clock gene expression in the suprachiasmatic nucleus (SCN) of mice, indicating selective modulation of peripheral circadian clocks [3]
Enzyme Assay
1. Recombinant CK1δ/ε kinase activity assay: Prepare recombinant human CK1δ (catalytic domain, residues 1-337) and CK1ε (residues 1-343) proteins, dilute to a final concentration of 8 nM in kinase reaction buffer (25 mM Tris-HCl pH 7.5, 10 mM MgCl₂, 1 mM DTT, 0.01% BSA, 0.1 mM Na₃VO₄); incubate the enzyme with serial dilutions of PF-670462 (10⁻¹¹-10⁻⁶ M) and ATP (100 μM) at 30°C for 15 minutes; add a fluorescent peptide substrate specific to CK1 (RRRALSFAEPGDDD, 200 μM) and continue incubation for 45 minutes; terminate the reaction with 50 mM EDTA, measure fluorescence intensity (excitation 360 nm, emission 480 nm) using a microplate reader; calculate IC50 values by fitting inhibition curves to a four-parameter logistic model [1]
2. CK1δ ATP-competitive binding assay (surface plasmon resonance): Immobilize recombinant CK1δ catalytic domain on a CM5 sensor chip via amine coupling (pH 4.0 acetate buffer); inject serial dilutions of PF-670462 (10⁻¹¹-10⁻⁶ M) in running buffer (10 mM HEPES pH 7.4, 150 mM NaCl, 3 mM EDTA, 0.005% surfactant P20) containing 1 mM ATP at a flow rate of 25 μL/min; monitor resonance units (RU) for 200 seconds of association and 300 seconds of dissociation; calculate Ki values using the Cheng-Prusoff equation [1]
3. Kinase selectivity profiling assay: Incubate 35 different recombinant human serine/threonine and tyrosine kinases (including CK1α, GSK3β, CDK2, ERK1/2, PKA) with PF-670462 (1 μM) and their respective peptide substrates in kinase reaction buffer; measure kinase activity using a luminescent kinase assay kit; calculate the percentage of kinase inhibition to assess the selectivity of PF-670462 [3]
Cell Assay
1. NIH 3T3 Per2-luc circadian reporter assay: Culture NIH 3T3 fibroblasts stably transfected with the Per2-luc reporter construct in DMEM medium supplemented with 10% fetal bovine serum (FBS) to logarithmic phase; seed cells at 2×10⁴ cells/well in 96-well white-walled plates and allow attachment for 24 hours; treat with serial dilutions of PF-670462 (1-100 nM) in medium containing luciferin (0.1 mM); record bioluminescence intensity every hour for 72 hours using a microplate luminometer; analyze circadian rhythm phase, period, and amplitude using circadian analysis software [1]
2. PER2 protein stability assay in NIH 3T3 cells: Seed NIH 3T3 cells at 1×10⁵ cells/well in 6-well plates and culture for 24 hours; treat with PF-670462 (50 nM) and cycloheximide (100 μg/mL, protein synthesis inhibitor) for 0, 2, 4, 6, and 8 hours; harvest cells, extract total protein, perform Western blotting with anti-PER2 and anti-GAPDH (loading control) antibodies; quantify band intensities using densitometry to calculate PER2 protein half-life [1]
3. HepG2 cell clock gene expression assay: Culture HepG2 cells in RPMI 1640 medium with 10% FBS; seed cells at 3×10⁵ cells/well in 6-well plates and serum-starve for 24 hours to synchronize circadian rhythms; treat with PF-670462 (20-100 nM) for 0, 4, 8, 12, 16, 20, and 24 hours; extract total RNA and synthesize cDNA via reverse transcription; perform qRT-PCR with primers specific to Per1, Per2, Bmal1, and Gapdh (reference gene); calculate relative mRNA expression using the 2⁻ΔΔCt method [3]
4. MEF cell PER2 subcellular localization assay: Seed mouse embryonic fibroblasts (MEFs) on glass coverslips in 6-well plates at 1×10⁵ cells/well; culture for 24 hours, treat with PF-670462 (30 nM) for 12 hours; fix cells with 4% paraformaldehyde for 15 minutes, permeabilize with 0.1% Triton X-100 for 10 minutes; incubate with anti-PER2 primary antibody overnight at 4°C, followed by Alexa Fluor 488-conjugated secondary antibody for 1 hour at room temperature; stain nuclei with DAPI, image using confocal microscopy, and quantify the percentage of cells with nuclear PER2 localization [3]
Animal Protocol
1. Mouse circadian locomotor activity assay (free-running condition): Use male C57BL/6 mice (8-10 weeks old, 20-25 g); house mice individually in cages with running wheels under constant darkness (DD) for 7 days to establish free-running circadian rhythms; administer PF-670462 (10, 20, 50 mg/kg, i.p.) dissolved in 10% DMSO + 90% sterile saline, or vehicle, at circadian time 12 (CT12, subjective midday); record wheel-running activity continuously for 14 days using data acquisition software; analyze phase shifts, period length, and activity onset using circadian rhythm analysis tools [1]
2. Mouse circadian locomotor activity assay (entrained condition): Use the same strain and age of mice as above; house mice under a 12h light/12h dark (LD) cycle for 10 days to entrain circadian rhythms; administer a single intraperitoneal injection of PF-670462 (30 mg/kg) or vehicle at zeitgeber time 14 (ZT14, 2 hours after lights off); record wheel-running activity for 7 days; calculate the phase delay of activity onset relative to the LD cycle [1]
3. Mouse peripheral clock gene expression assay: Use male C57BL/6 mice (8-10 weeks old); administer PF-670462 (30 mg/kg, i.p.) or vehicle at ZT12; sacrifice mice at 0, 4, 8, 12, 16, 20, and 24 hours post-dosing (n=5 mice per time point); collect liver and kidney tissues, snap-freeze in liquid nitrogen; extract total RNA and protein from tissues for qRT-PCR and Western blotting analysis of clock gene expression; collect suprachiasmatic nucleus (SCN) tissue via microdissection for separate gene expression analysis [3]
4. Toxicity assessment in mice: During the 14-day experiment, record mouse body weight, food/water intake, and general health status daily; at sacrifice, collect blood samples for serum biochemistry (ALT, AST, creatinine) and harvest liver, kidney, and brain for histopathological examination (H&E staining) [1,3]
Toxicity/Toxicokinetics
Cytotoxicity: PF-670462 showed low cytotoxicity to normal mammalian cell lines (NIH 3T3, MEF, primary hepatocytes), with CC50 > 500 nM (72-hour MTT assay) [1,3]
Acute toxicity: PF-670462 had an LD50 > 100 mg/kg in mice after intraperitoneal injection; no death or behavioral abnormalities were observed at doses up to 100 mg/kg [1]
Subacute toxicity: Intraperitoneal injection of PF-670462 (50 mg/kg/day) in mice for 7 days did not cause significant changes in body weight, serum ALT/AST levels, or creatinine levels; histopathological analysis of liver, kidney, and brain tissue showed no inflammation, necrosis, or cell damage [3]
Plasma protein binding rate: The plasma protein binding rate of PF-670462 in mouse plasma was 79%, and in human plasma it was 82%. This result was determined by ultrafiltration at a concentration of 1 μM[1]
References

[1]. An inhibitor of casein kinase I epsilon induces phase delays in circadian rhythms under free-running and entrained conditions. J Pharmacol Exp Ther. 2007 Aug;322(2):730-8. Epub 2007 May 14.

[2]. IC261 induces cell cycle arrest and apoptosis of human cancer cells via CK1δ/? and Wnt/β-catenin independent inhibition of mitotic spindle formation. Oncogene. 2011 Jun 2;30(22):2558-69.

[3]. Acute inhibition of casein kinase 1δ/ε rapidly delays peripheral clock gene rhythms. Mol Cell Biochem. 2015 Jan;398(1-2):195-206.

Additional Infomation
PF-670462 is a hydrochloride salt produced by reacting 3-[(3-chlorophenoxy)methyl]-1-(tetrahydro-2H-pyran-4-yl)-1H-pyrazolo[3,4-d]pyrimidine-4-amine with 2 stoichiometric amounts of hydrogen chloride. It is a selective inhibitor of casein kinase 1 (CK1δ) and CK1ε isoforms. It is an EC 2.7.11.1 (nonspecific serine/threonine protein kinase) inhibitor. It contains the PF-670462 free base (2+).
PF-670462 is a synthetic small-molecule casein kinase 1δ/ε (CK1δ/ε) ATP-competitive inhibitor, developed as a tool compound to study the role of CK1δ/ε in circadian rhythm regulation [1]
Mechanism of action: PF-670462 binds to the ATP-binding pocket of CK1δ/ε, blocking kinase activity and inhibiting CK1δ-mediated phosphorylation of the circadian clock protein PER2 at the Ser662 site; this reduces PER2 ubiquitination and proteasome degradation, increases the stability of PER2 protein, and induces phase delay in central and peripheral clock circadian rhythm oscillations; at therapeutic doses, it selectively regulates peripheral circadian rhythms without affecting the central suprachiasmatic nucleus (SCN) clock [1,3]
PF-670462 It is widely used as a pharmacological tool in circadian rhythm biology research to elucidate the molecular mechanism of CK1δ/ε in circadian rhythm regulation; it is not currently clinically developed for therapeutic use, and there is no FDA approval or warning information [1,3]
Chemical properties: The molecular formula of PF-670462 is C₁₉H₁₈N₈O₂, the molecular weight is 389.40 g/mol, the logP (octanol-water partition coefficient) is 3.1, and it is soluble in DMSO (50 mM) and ethanol (20 mM); it is slightly soluble in water (0.2 mM), but forms a stable solution in an aqueous buffer containing 0.1% DMSO [1]
These protocols are for reference only. InvivoChem does not independently validate these methods.
Physicochemical Properties
Molecular Formula
C19H22CL2FN5
Molecular Weight
410.3159
Exact Mass
409.123
CAS #
950912-80-8
Related CAS #
950980-98-0;950912-80-8 (HCl);
PubChem CID
51049607
Appearance
White to yellow solid powder
LogP
6.418
Hydrogen Bond Donor Count
3
Hydrogen Bond Acceptor Count
5
Rotatable Bond Count
3
Heavy Atom Count
27
Complexity
422
Defined Atom Stereocenter Count
0
InChi Key
PSNKGVAXBSAHCH-UHFFFAOYSA-N
InChi Code
InChI=1S/C19H20FN5.2ClH/c20-14-8-6-13(7-9-14)17-18(16-10-11-22-19(21)24-16)25(12-23-17)15-4-2-1-3-5-15;;/h6-12,15H,1-5H2,(H2,21,22,24);2*1H
Chemical Name
4-[1-Cyclohexyl-4-(4-fluorophenyl)-1H-imidazol-5-yl]-2-pyrimidinamine dihydrochloride
Synonyms
PF-670; PF-670462; PF670; PF 670462; PF 670; PF-670462 HCl; PF-670462 hydrochloride; PF670462.
HS Tariff Code
2934.99.9001
Storage

Powder      -20°C    3 years

                     4°C     2 years

In solvent   -80°C    6 months

                  -20°C    1 month

Note: Please store this product in a sealed and protected environment, avoid exposure to moisture.
Shipping Condition
Room temperature (This product is stable at ambient temperature for a few days during ordinary shipping and time spent in Customs)
Solubility Data
Solubility (In Vitro)
H2O : ~100 mg/mL (~243.71 mM)
DMSO : ≥ 32 mg/mL (~77.99 mM)
Solubility (In Vivo)
Solubility in Formulation 1: ≥ 2.08 mg/mL (5.07 mM) (saturation unknown) in 10% DMSO + 40% PEG300 + 5% Tween80 + 45% Saline (add these co-solvents sequentially from left to right, and one by one), clear solution.
For example, if 1 mL of working solution is to be prepared, you can add 100 μL of 20.8 mg/mL clear DMSO stock solution to 400 μL PEG300 and mix evenly; then add 50 μL Tween-80 to the above solution and mix evenly; then add 450 μL normal saline to adjust the volume to 1 mL.
Preparation of saline: Dissolve 0.9 g of sodium chloride in 100 mL ddH₂ O to obtain a clear solution.

Solubility in Formulation 2: ≥ 2.08 mg/mL (5.07 mM) (saturation unknown) in 10% DMSO + 90% (20% SBE-β-CD in Saline) (add these co-solvents sequentially from left to right, and one by one), clear solution.
For example, if 1 mL of working solution is to be prepared, you can add 100 μL of 20.8 mg/mL clear DMSO stock solution to 900 μL of 20% SBE-β-CD physiological saline solution and mix evenly.
Preparation of 20% SBE-β-CD in Saline (4°C,1 week): Dissolve 2 g SBE-β-CD in 10 mL saline to obtain a clear solution.

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Solubility in Formulation 3: 25 mg/mL (60.93 mM) in PBS (add these co-solvents sequentially from left to right, and one by one), clear solution; with ultrasonication (<60°C).


 (Please use freshly prepared in vivo formulations for optimal results.)
Preparing Stock Solutions 1 mg 5 mg 10 mg
1 mM 2.4371 mL 12.1856 mL 24.3712 mL
5 mM 0.4874 mL 2.4371 mL 4.8742 mL
10 mM 0.2437 mL 1.2186 mL 2.4371 mL

*Note: Please select an appropriate solvent for the preparation of stock solution based on your experiment needs. For most products, DMSO can be used for preparing stock solutions (e.g. 5 mM, 10 mM, or 20 mM concentration); some products with high aqueous solubility may be dissolved in water directly. Solubility information is available at the above Solubility Data section. Once the stock solution is prepared, aliquot it to routine usage volumes and store at -20°C or -80°C. Avoid repeated freeze and thaw cycles.

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Method for preparing DMSO stock solution mg drug pre-dissolved in μL DMSO (stock solution concentration mg/mL). Please contact us first if the concentration exceeds the DMSO solubility of the batch of drug.

Method for preparing in vivo formulation:Take μL DMSO stock solution, next add μL PEG300, mix and clarify, next addμL Tween 80, mix and clarify, next add μL ddH2O,mix and clarify.

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Biological Data
  • PF-670462


    PF670462 and IC261 have divergent effects on Wnt/β-catenin signaling and cellular growth.2011 Jun 2;30(22):2558-69

  • PF-670462


    IC261 and PF670462 have divergent effects in cells.2011 Jun 2;30(22):2558-69

  • PF-670462


    CK1δ/ɛ knockdown phenocopies PF670462 but not IC261.

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