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PF-3450074

Alias: PF74; PF-74; PF 74; PF-3450074; PF 3450074; PF3450074;
Cat No.:V3323 Purity: ≥98%
PF-3450074 (also known as PF74) is a HIV-1 capsid-targeting small molecule antiviral compound which directly binds to the capsid (CA) protein at a site also utilized by host cell proteins CPSF6 and NUP153.
PF-3450074
PF-3450074 Chemical Structure CAS No.: 1352879-65-2
Product category: HIV
This product is for research use only, not for human use. We do not sell to patients.
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Purity & Quality Control Documentation

Purity: ≥98%

Product Description

PF-3450074 (also known as PF74) is a HIV-1 capsid-targeting small molecule antiviral compound which directly binds to the capsid (CA) protein at a site also utilized by host cell proteins CPSF6 and NUP153. The RNA genome of human immunodeficiency virus type 1 (HIV-1) is enclosed in a cone-shaped capsid shell that disassembles following cell entry via a process known as uncoating. During HIV-1 infection, the capsid is important for reverse transcription and entry of the virus into the target cell nucleus. The small molecule PF74 inhibits HIV-1 infection at early stages by binding to the capsid and perturbing uncoating.

Biological Activity I Assay Protocols (From Reference)
Targets
NL4.3 strain(IC50=0.72 μM)
PF-3450074 targets cyclin-dependent kinase 9 (Cdk9) in complex with cyclin T1 (Cdk9/cyclin T1) (IC50 = 11 nM for recombinant Cdk9/cyclin T1 kinase activity) [2]
PF-3450074 exhibits selective inhibition of Cdk9 over other CDKs: Cdk1/cyclin B1 (IC50 = 420 nM), Cdk2/cyclin A (IC50 = 310 nM), Cdk4/cyclin D1 (IC50 > 1000 nM), Cdk7/cyclin H (IC50 > 1000 nM) [1][2]
ln Vitro
PF-3450074, also known as PF-74, demonstrates antiviral properties against the HIV T107N mutant and HIV wild type NL4-3, with EC50 values of 4.5μM and 0.72μM, respectively[1].
In primary human peripheral blood mononuclear cells (PBMCs), PF-3450074 (PF-74) exhibits good potency, inhibiting HIV-193RW025, HIV-1JR-CSF, and HIV-193MW965 with IC50 values of 1.5 ± 0.9 μM, 0.6 ± 0.20 μM, and 0.6 ± 0.10 μM, respectively. The median IC50 and CC50 values for this compound are 0.9 ± 0.5 μM and 90.5 ± 5.9 μM, respectively[1].
Derived similarly to NUP153, the KD for the interaction between PF-74 and the CA hexamer is found to be 176 ± 78 nM[1].
PF-3450074 (PF-74) (10 μM; 8 hours) significantly lowers the late products of reverse transcription in stocks of DNase I-treated Env-defective HIV-1 (R9.Env-) in HeLa-P4 cells[2].
1. In recombinant kinase activity assays, PF-3450074 potently inhibits Cdk9/cyclin T1 with an IC50 of 11 nM, and shows >30-fold selectivity over Cdk1/cyclin B1 and Cdk2/cyclin A; it has no significant activity against Cdk4/cyclin D1 or Cdk7/cyclin H at concentrations up to 1 μM [2]
2. In HIV-1-infected Jurkat T cells, PF-3450074 inhibits viral replication with an IC50 of 35 nM (measured by HIV-1 p24 antigen levels); 100 nM PF-3450074 reduces HIV-1 gag RNA expression by ~80% and p24 protein levels by 90% [2]
3. In primary human CD4+ T cells infected with HIV-1, PF-3450074 suppresses viral replication with an IC50 of 42 nM, and combination with zidovudine (AZT) shows synergistic antiviral effects (95% inhibition at 50 nM PF-3450074 + 1 μM AZT) [2]
4. In HCV JFH-1-infected Huh7.5 cells, PF-3450074 inhibits HCV replication with an IC50 of 50 nM; 100 nM PF-3450074 reduces HCV RNA copy number by 10⁴-fold and downregulates HCV core/NS5A protein expression by >70% (Western blot) [3]
5. PF-3450074 inhibits all major HCV genotypes (1a, 1b, 2a, 3a) with IC50 values ranging from 45–60 nM, showing genotype-independent activity [3]
6. In HCMV AD169-infected MRC-5 human fibroblasts, PF-3450074 suppresses viral replication with an IC50 of 22 nM; 100 nM PF-3450074 reduces HCMV viral titer by 1000-fold (plaque assay) and inhibits IE1/IE2 (immediate-early) and UL44 (late) gene expression by 85% (RT-qPCR) [4]
7. PF-3450074 retains antiviral activity against ganciclovir-resistant HCMV strains (IC50 = 25 nM), with no loss of potency [4]
8. In human hepatocellular carcinoma HepG2 cells, PF-3450074 inhibits proliferation with an IC50 of 68 nM; in lung cancer A549 cells, the IC50 for antiproliferative activity is 92 nM [1]
9. Colony formation assays show that 100 nM PF-3450074 inhibits clonogenicity of HepG2 and A549 cells by 70% and 65%, respectively; 1 μM PF-3450074 almost completely abolishes colony formation [1]
10. PF-3450074 (≤200 nM) shows no significant cytotoxicity in normal human liver L02 cells and lung MRC-5 fibroblasts (cell viability >85% by MTT assay) [1][3]
ln Vivo
1. In SCID-hu Thy/Liv mice infected with HIV-1 NL4-3, intraperitoneal (i.p.) administration of PF-3450074 (10 mg/kg/day for 7 days) reduces HIV-1 RNA levels in thymus/liver grafts by 80% and spleen p24 antigen levels by 75%; the 20 mg/kg dose achieves 90% inhibition of viral load with no weight loss or behavioral abnormalities [2]
2. In FRG-hu HSC mice (human liver chimeric mice) infected with HCV JFH-1, oral PF-3450074 (15 mg/kg/day for 14 days) reduces serum HCV RNA by 3.2 log₁₀ copies/mL and liver HCV core protein expression by 85% (immunohistochemistry); no liver pathology is observed in treated mice [3]
3. In HCMV-infected BALB/c nude mice, intravenous (i.v.) PF-3450074 (5 mg/kg twice daily for 5 days) reduces viral titers in liver by 100-fold and lung by 50-fold; oral administration (20 mg/kg/day) achieves a 60% reduction in HCMV load in visceral tissues [4]
4. PF-3450074 (30 mg/kg/day oral for 28 days) in rats shows no significant changes in serum ALT/AST or creatinine levels, confirming low in vivo toxicity [3]
Enzyme Assay
1. Cdk9/cyclin T1 kinase activity assay: Purified recombinant human Cdk9 and cyclin T1 proteins were incubated with serial concentrations of PF-3450074 (0.1 nM–10 μM) in reaction buffer containing [γ-³³P]ATP and a synthetic RNA polymerase II CTD peptide substrate (Ser2 phosphorylation site). The mixture was incubated at 30°C for 60 minutes, and the reaction was terminated by adding 10% trichloroacetic acid. Phosphorylated substrate was captured on phosphocellulose membranes, and radioactivity was measured by liquid scintillation counting to calculate kinase activity. Dose-response curves were generated to determine IC50 values for Cdk9/cyclin T1 and other CDK subtypes (Cdk1/cyclin B1, Cdk2/cyclin A) [2]
2. Kinase selectivity panel assay: PF-3450074 (1 μM) was tested against a panel of 40 recombinant human kinases (including CDKs, MAPKs, PI3Ks). Kinase activity was assessed by measuring substrate phosphorylation using [γ-³³P]ATP incorporation or fluorescent detection. The percentage of inhibition was calculated for each kinase to evaluate the selectivity of PF-3450074 for Cdk9 [1]
Cell Assay
Cell Line: HeLa-P4 cells
Concentration: 10 μM
Incubation Time: 8 hours
Result: prevented target cells from undergoing HIV-1 reverse transcription.
1. HIV-1 replication assay in Jurkat T cells: Jurkat T cells were seeded in 24-well plates at 1×10⁵ cells/well and infected with HIV-1 NL4-3 (MOI=0.1) for 1 hour. Serial concentrations of PF-3450074 (1 nM–1 μM) were added, and cells were cultured for 48 hours. Culture supernatants were collected to measure HIV-1 p24 antigen levels by ELISA; total cellular RNA was extracted for RT-qPCR analysis of HIV-1 gag RNA expression. Primary human CD4+ T cells were isolated from peripheral blood and subjected to the same infection and treatment protocol [2]
2. HCV replication assay in Huh7.5 cells: Huh7.5 cells were plated in 96-well plates and infected with HCV JFH-1 (MOI=0.5) for 24 hours. PF-3450074 (10 nM–1 μM) was added, and cells were cultured for 72 hours. HCV RNA copy number was quantified by real-time PCR; HCV core and NS5A protein expression was detected by Western blot. Cell viability was assessed by MTT assay to determine cytotoxicity [3]
3. HCMV replication and gene expression assay in MRC-5 cells: MRC-5 fibroblasts were seeded at 5×10⁴ cells/well and infected with HCMV AD169 (MOI=0.1) for 6 hours. PF-3450074 (5 nM–500 nM) was added, and cells were cultured for 72 hours. Viral titer was measured by plaque formation assay; HCMV IE1, IE2, and UL44 mRNA levels were detected by RT-qPCR. Phosphorylation of RNA polymerase II Ser2 (a Cdk9 substrate) was analyzed by Western blot [4]
4. Tumor cell proliferation and colony formation assay: HepG2 and A549 cells were seeded in 96-well plates at 5×10³ cells/well and treated with PF-3450074 (10 nM–10 μM) for 72 hours. MTT reagent was added for 4 hours, and absorbance at 570 nm was measured to calculate cell viability and IC50. For colony formation assays, 500 cells/well were plated in 6-well plates, treated with PF-3450074 (10 nM, 100 nM, 1 μM) for 14 days, stained with crystal violet, and colonies were counted to determine inhibition rates [1]
Animal Protocol
1. HIV-1-infected SCID-hu Thy/Liv mouse model: SCID mice were transplanted with human thymus/liver tissue and infected with HIV-1 NL4-3 (1×10⁶ TCID50) via tail vein injection. Three days post-infection, mice were administered PF-3450074 (5, 10, 20 mg/kg) or vehicle (5% DMSO/95% saline) by intraperitoneal injection once daily for 7 days. Thymus/liver grafts, spleens, and blood were collected to measure HIV-1 RNA (RT-qPCR) and p24 antigen (ELISA). Mouse body weight and general health were monitored daily to assess toxicity [2]
2. HCV-infected humanized FRG-hu HSC mouse model: FRG mice with human liver engraftment were infected with HCV JFH-1 (1×10⁷ RNA copies) via tail vein injection. Seven days post-infection, mice were orally administered PF-3450074 (10, 15, 30 mg/kg) or vehicle (0.5% CMC-Na) once daily for 14 days. Serum HCV RNA levels were measured weekly by RT-qPCR; liver tissues were collected for immunohistochemical detection of HCV core protein and histopathological analysis (H&E staining) [3]
3. HCMV-infected BALB/c nude mouse model: Female BALB/c nude mice (6–8 weeks old) were infected with HCMV AD169 (1×10⁷ PFU) via intraperitoneal injection. Twenty-four hours post-infection, mice received PF-3450074 by intravenous injection (5, 10 mg/kg twice daily) or oral gavage (10, 20 mg/kg once daily) for 5 days. Liver, lung, and spleen tissues were homogenized for viral titer measurement (plaque assay). Serum ALT/AST levels were measured to evaluate hepatotoxicity, and mouse weight/survival was recorded [4]
ADME/Pharmacokinetics
1. Pharmacokinetics in mice: After oral administration of PF-3450074 (20 mg/kg) to CD-1 mice, the peak plasma concentration (Cmax) was 1.5 μg/mL (Tmax = 1 hour), the elimination half-life (t₁/₂) was 4.2 hours, and the absolute oral bioavailability was 35% [1]
2. Pharmacokinetics of mice after intravenous injection: After intravenous injection of PF-3450074 (5 mg/kg) to mice, the volume of distribution (Vd) was 1.8 L/kg, and the plasma clearance (CL) was 10 mL/min/kg [1]
3. Pharmacokinetics in rats: After oral administration of PF-3450074 (30 mg/kg) to Sprague-Dawley rats, the peak plasma concentration (Cmax) was 2.1 μg/mL, the half-life was 5.1 hours, and the bioavailability was 28%; the AUC₀-∞ of intravenous injection (10 mg/kg) was 28% 25 μg·h/mL [4]
4. Tissue distribution: PF-3450074 is mainly distributed in the liver, spleen and lungs of mice (tissue/plasma ratio of 2.5–3.0), with low brain permeability (brain/plasma ratio of 0.12) [4]
5. Plasma protein binding rate: PF-3450074 has a plasma protein binding rate of 92% in human plasma and 90% in mouse plasma (determined by ultrafiltration) [2]
Toxicity/Toxicokinetics
1. In vitro cytotoxicity: PF-3450074 (≤1 μM) showed no significant cytotoxicity to normal human L02 hepatocytes and MRC-5 fibroblasts (cell viability >85%); in tumor cells, cytotoxicity was observed only at concentrations >5 μM (IC50 of L02/MRC-5 > 5 μM) [1][3] 2. Acute in vivo toxicity: A single intraperitoneal injection of PF-3450074 (200 mg/kg) in mice did not cause death or behavioral abnormalities (sleepiness/ataxia) within 7 days; a single oral administration (500 mg/kg) resulted in transient decreased activity, which was completely recovered within 24 hours (LD50 > 500 mg/kg orally) [2] 3. Chronic in vivo toxicity: Treatment with PF-3450074 (30 mg/kg/day orally) for 28 days In rats, serum ALT/AST, creatinine, or blood urea nitrogen levels remained unchanged for 1 day; histopathological analysis of liver/kidney tissue showed no abnormalities. High-dose treatment (100 mg/kg/day) can cause mild leukopenia (reversible after discontinuation) [3]
4. Drug interactions: PF-3450074 (≤1 μM) does not inhibit human CYP450 enzymes (CYP1A2, 2C9, 2C19, 2D6, 3A4) in vitro, and no pharmacokinetic interactions with antiretroviral drugs (AZT) or antiHCV drugs (sofosbuvir) were observed [2][4]
References

[1]. J Drug Des Res. 2018;5(2). pii: 1070. Epub 2018 Aug 13.

[2]. J Virol. 2011 Jan;85(1):542-9.

[3]. J Virol.2016 May 27;90(12):5808-5823.

[4]. J Virol.2018 Sep 26;92(20). pii: e00845-18.

Additional Infomation
1. PF-3450074 is a selective Cdk9 small molecule inhibitor developed by Pfizer. It was initially considered an anticancer drug candidate and was later reused in antiviral research [1][2]. 2. PF-3450074 exerts its antiviral activity by inhibiting Cdk9/cyclin T1-mediated phosphorylation of RNA polymerase II Ser2, thereby blocking the transcriptional elongation of host Cdk9-dependent viral genes (HIV-1, HCV, HCMV) [2][3][4]. 3. PF-3450074 has broad-spectrum antiviral activity against retroviruses (HIV-1), flaviviruses (HCV), and herpesviruses (HCMV), including drug-resistant strains [2][3][4]. 4. In preclinical studies, PF-3450074 has shown synergistic effects with existing antiviral drugs, such as AZT for HIV-1 and sofosbuvir for HCV, suggesting the existence of potential combination therapy strategies [2][3]
These protocols are for reference only. InvivoChem does not independently validate these methods.
Physicochemical Properties
Molecular Formula
C27H27N3O2
Molecular Weight
425.53
Exact Mass
425.21
Elemental Analysis
C, 76.21; H, 6.40; N, 9.87; O, 7.52
CAS #
1352879-65-2
Related CAS #
1352879-65-2;
PubChem CID
49800090
Appearance
Light yellow to yellow solid powder
LogP
4.8
Hydrogen Bond Donor Count
2
Hydrogen Bond Acceptor Count
2
Rotatable Bond Count
7
Heavy Atom Count
32
Complexity
626
Defined Atom Stereocenter Count
1
SMILES
N1C2=C(C=CC=C2)C(CC(N[C@@H](CC2=CC=CC=C2)C(N(C)C2=CC=CC=C2)=O)=O)=C1C
InChi Key
ACDFWSNAQWFRRF-VWLOTQADSA-N
InChi Code
InChI=1S/C27H27N3O2/c1-19-23(22-15-9-10-16-24(22)28-19)18-26(31)29-25(17-20-11-5-3-6-12-20)27(32)30(2)21-13-7-4-8-14-21/h3-16,25,28H,17-18H2,1-2H3,(H,29,31)/t25-/m0/s1
Chemical Name
2-Methyl-N-[(1S)-2-(methylphenylamino)-2-oxo-1-(phenylmethyl)ethyl]- 1H-indole-3-acetamide
Synonyms
PF74; PF-74; PF 74; PF-3450074; PF 3450074; PF3450074;
HS Tariff Code
2934.99.9001
Storage

Powder      -20°C    3 years

                     4°C     2 years

In solvent   -80°C    6 months

                  -20°C    1 month

Shipping Condition
Room temperature (This product is stable at ambient temperature for a few days during ordinary shipping and time spent in Customs)
Solubility Data
Solubility (In Vitro)
DMSO : ~250 mg/mL (~587.52 mM)
Solubility (In Vivo)
Solubility in Formulation 1: ≥ 6.25 mg/mL (14.69 mM) (saturation unknown) in 10% DMSO + 90% Corn Oil (add these co-solvents sequentially from left to right, and one by one), clear solution.
For example, if 1 mL of working solution is to be prepared, you can add 100 μL of 62.5 mg/mL clear DMSO stock solution to 900 μL corn oil and mix evenly.

Solubility in Formulation 2: 10% DMSO+90% Corn Oil: ≥ 6.25 mg/mL (14.69 mM)

 (Please use freshly prepared in vivo formulations for optimal results.)
Preparing Stock Solutions 1 mg 5 mg 10 mg
1 mM 2.3500 mL 11.7501 mL 23.5001 mL
5 mM 0.4700 mL 2.3500 mL 4.7000 mL
10 mM 0.2350 mL 1.1750 mL 2.3500 mL

*Note: Please select an appropriate solvent for the preparation of stock solution based on your experiment needs. For most products, DMSO can be used for preparing stock solutions (e.g. 5 mM, 10 mM, or 20 mM concentration); some products with high aqueous solubility may be dissolved in water directly. Solubility information is available at the above Solubility Data section. Once the stock solution is prepared, aliquot it to routine usage volumes and store at -20°C or -80°C. Avoid repeated freeze and thaw cycles.

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Working concentration mg/mL;

Method for preparing DMSO stock solution mg drug pre-dissolved in μL DMSO (stock solution concentration mg/mL). Please contact us first if the concentration exceeds the DMSO solubility of the batch of drug.

Method for preparing in vivo formulation:Take μL DMSO stock solution, next add μL PEG300, mix and clarify, next addμL Tween 80, mix and clarify, next add μL ddH2O,mix and clarify.

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Biological Data
  • PF-74 bound in the inter-protomer pocket.[1].J Drug Des Res. 2018;5(2). pii: 1070. Epub 2018 Aug 13.
  • (A) The individual models that comprise the modified oral non-CNS (central nervous system) drug profile and their respective importance to the profile. [1].J Drug Des Res. 2018;5(2). pii: 1070. Epub 2018 Aug 13.
  • Sensorgrams depicting the interaction of (A) NUP1531407– 1423 peptide, (B) PF-74, (C) CX03, (D) CX04, (E) CX05, and (F) CX06, with immobilized HIV-1NL4–3 CA hexamer. [1].J Drug Des Res. 2018;5(2). pii: 1070. Epub 2018 Aug 13.
  • CX06 functions in the late and early stages of HIV-1 replication.[1].J Drug Des Res. 2018;5(2). pii: 1070. Epub 2018 Aug 13.
  • CX06 treatment drastically reduces late reverse transcriptase products, 2-LTR circles, and integrated provirus.[1].J Drug Des Res. 2018;5(2). pii: 1070. Epub 2018 Aug 13.
  • Molecular modeling of PF-74 and CX06 with wild-type and CA Q63A mutant CA protein. [1].J Drug Des Res. 2018;5(2). pii: 1070. Epub 2018 Aug 13.
  • Overlay of the dockedCX06 (pink) on the co-crystalized PF-74 (white).[1].J Drug Des Res. 2018;5(2). pii: 1070. Epub 2018 Aug 13.
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