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PF-04929113 mesylate

Alias: SNX-5422 mesylate;SNX5422; SNX 5422; PF4929113; PF-4929113 mesylate; PF 4929113; PF04929113; PF 04929113; PF-04929113mesylate
Cat No.:V3758 Purity: ≥98%
PF-04929113 mesylate (also known as SNX-5422 mesylate) is a potent and selective inhibitor of heat shock protein 90 (HSP90) with Kd of 41 nM, it induces Her-2 degradation with IC50 of 37 nM.
PF-04929113 mesylate
PF-04929113 mesylate Chemical Structure CAS No.: 1173111-67-5
Product category: Others 5
This product is for research use only, not for human use. We do not sell to patients.
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Other Forms of PF-04929113 mesylate:

  • PF-04929113 (SNX-5422)
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Purity & Quality Control Documentation

Purity: ≥98%

Product Description
PF-04929113 mesylate (also known as SNX-5422 mesylate) is a potent and
selective inhibitor of heat shock protein 90 (HSP90) with Kd of 41 nM,
it induces Her-2 degradation with IC50 of 37 nM. PF-04929113 is a
synthetic prodrug of SNX-2112 with potential antineoplastic activity. PF-04929113 is
rapidly converted to SNX-2112, which accumulates in tumors relative to
normal tissues. SNX-2112 inhibits Hsp90, which may result in the
proteasomal degradation of oncogenic client proteins, including
HER2/ERBB2, and the inhibition of tumor cell proliferation.


PF-04929113 mesylate (CAS#: 1173111-67-5) is the methanesulfonate salt of the glycine ester prodrug of SNX-2112 (compound 9). It is an orally bioavailable and efficacious inhibitor of heat shock protein 90 (Hsp90) developed from a novel class of indazol-4-one derived 2-aminobenzamides. It is currently in multiple phase I clinical trials. [1]
Biological Activity I Assay Protocols (From Reference)
Targets
PF-04929113 mesylate (CAS#: 1173111-67-5) is a prodrug that rapidly converts to SNX-2112 (9), which targets Hsp90. The binding affinity (Kd) of the active form (SNX-2112) for Hsp90 is 41 nM (from Table 4, compound 10 entry, Kd value). [1]
ln Vitro


PF-04929113 is a small-molecule Hsp90 inhibitor based on the
6,7-dihydro-indazol-4-one scaffold. PF-04929113 developed by Serenex,
converts to SNX-2122, which is the active Hsp90 inhibitor form.
PF-04929113 exhibits potent effects on Her-2 stability and causes
expected up-regulation of Hsp70. PF-04929113 shows potent
antiproliferative activity against a broad range of cancer cell types,
e.g. MCF-7 (IC50=16 nM), SW620 (IC50=19 nM), K562 (IC50=23 nM), SK-MEL-5
(IC50=25 nM), and A375 (IC50=51 nM).


Kinase Assay:
Hsp90 from porcine spleen extract is isolated by affinity capture on a
purine-affinity media. The Hsp90 loaded media is then challenged with
PF-04929113 at a given concentration, ranging from 0.8 to 500 μM, and
the amount of Hsp90 liberated at each concentration is determined by
Bradford protein assay. The resulting IC50 values are corrected for the
ATP ligand concentration and presented as apparent Kd values.


Cell Assay:
All assays are done in 96-well plates. All cell lines are purchased
from ATCC. Proliferation rates are measured by seeding cells (MCF-7,
SW620, K562, SK-MEL-5 and A375 cancer cell lines) into 96-well plates,
followed by compound addition 24 h later. After addition of PF-04929113,
cells are allowed to grow for either an additional 72 or 144 h
depending on rate of growth. At harvest, media is removed and DNA
content for individual wells is determined using CyQuant DNA dye. Levels
of Hsp90 client proteins and phosphor-regulated proteins in A375 are
measured by high content analysis (HCA) using an ArrayScan 4.5
instrument after 24 hours of treatment with PF-04929113, followed by
methanol fixation. After fixation in 4% PBS-buffered formalin and
permeablization with 0.1% TX-100, cells are probed with anti-Her2,
antiphospho-S6 (pS6), antipERK, and anti-Hsp70 primary antibodies,
followed by TRITC or FITC conjugated secondary antibodies. Nuclei are
also stained with Hoechst DNA binding dye. For each well, 250-500
individual nuclei are identified along with the average staining
intensity for the client and phospho-proteins for each cell. Average
client staining intensities are then calculated for each well.


PF-04929113 mesylate (CAS#: 1173111-67-5) (compound 10) showed potent antiproliferative activity across multiple cancer cell lines: A375 (melanoma) IC50 = 23 ± 5 nM; LNCAP (prostate) IC50 = 3 ± 1 nM; MCF-7 (breast) IC50 = 53 ± 4 nM; HT-29 (colon) IC50 = 3 ± 0.7 nM; SW620 (colon) IC50 = 3 ± 0.5 nM; SK-MEL-5 (melanoma) IC50 = 6 ± 1 nM; PC-3 (prostate) IC50 = 17 ± 3 nM; MDA-MB-231 (breast) IC50 = 6 ± 1 nM; NCI-H460 (NSCLC) IC50 = 218 ± 4 nM; HCT-15 (colon) IC50 = 52 ± 12 nM; K562 (erythroleukemia) IC50 = 6 ± 1 nM. [1]
In client protein degradation assays: Hsp70 induction in A375 cells IC50 = 13 ± 3 nM; p-S6 degradation in A375 cells IC50 = 61 ± 22 nM; Her2 degradation in AU565 cells IC50 = 5 ± 1 nM; p-ERK degradation in AU565 cells IC50 = 11 ± 3 nM. [1]
Hsp90 binding affinity (Kd) of the active form (SNX-2112) is 41 nM as measured by an 8-point nonenzymatic ATPase assay. [1]
ln Vivo
PF-04929113 inhibits human MM cell growth in vivo, and
immuno-histochemical analysis shows PF-04929113 significantly inhibits
p-ERK and p-Akt in treated mice. Meanwhile, PF-04929113 treatment
significantly decreases the percentage of CD31+ cells and MVD,
consistent with an inhibitory effect on angiogenesis in vivo. A 50 mg/kg
administration of PF-04929113 delivered 3 times per week significantly
delays castrate-resistant LNCaP tumor growth and prolongs cancer
specific survival. Immuno-histochemical analysis indicates increased
SP70 expression, and decreases Ki67, Akt, and AR expression, after
treatment with PF-04929113. Inhibition of tumor progression by
PF-04929113 may result from a combination of decreased proliferative
(reduced Ki67 and Akt expression) or increased apoptosis (increased
ApopTag staining) rates.
In an HT-29 human colon tumor xenograft model, oral administration of PF-04929113 mesylate (CAS#: 1173111-67-5) at 50 mg/kg (MWF schedule for 3 weeks) resulted in 67% tumor growth delay over vehicle control. Median time to endpoint for the 50 mg/kg group was 43.2 days compared to 25.9 days for vehicle control. Two of 10 animals survived to the end of the study (61 days). The compound was well tolerated at all dose levels tested (5, 10, 25, 50 mg/kg), with no treatment-related deaths observed. [1]
Enzyme Assay
The affinity of the active compound (SNX-2112, 9) for Hsp90 was determined as previously described. Briefly, Hsp90 from porcine spleen extract was isolated by affinity capture on a purine-affinity media. The Hsp90-loaded media was then challenged with test compound at concentrations ranging from 0.8 to 500 μM, and the amount of Hsp90 liberated at each concentration was determined by Bradford protein assay. The resulting IC50 values were corrected for the ATP ligand concentration and presented as apparent Kd values. The Kd for compound 9 was 41 nM. [1]
Cell Assay
Cell proliferation assays: Cells were seeded into 96-well plates, and compound was added 24 h later. After 72 or 144 h of growth, media was removed, and DNA content was determined using CyQuant DNA dye. IC50 values were calculated. [1]
Client protein degradation assays (Her2, p-S6, p-ERK, Hsp70): A375 and AU565 cells were treated with compound for 24 h, then fixed with methanol. After fixation in 4% PBS-buffered formalin and permeabilization with 0.1% Triton X-100, cells were probed with primary antibodies (anti-Her2, anti-phospho-S6, anti-pERK, anti-Hsp70) followed by TRITC or FITC-conjugated secondary antibodies. Nuclei were stained with Hoechst. For each well, 250-500 individual nuclei were identified, and average staining intensity for each protein was calculated. IC50 values were determined. [1]
Animal Protocol
Dissolved
in 1% carboxy methylcellulose/0.5% Tween 80 at 10 mg/mL and stored at 4
°C for in vivo study; 20 or 40 mg/kg; oral gavage
Fox Chase SCID mice bearing MM.1S cells
For pharmacokinetic studies, female Swiss-Webster mice (40 per group) received PF-04929113 mesylate (CAS#: 1173111-67-5) intravenously at 10 mg/kg or orally at 10, 25, and 50 mg/kg. Blood samples were collected at 0.083, 0.167, 0.25, 0.5, 1, 2, 4, 8, 24, and 48 h after dosing. Plasma was separated and stored frozen. Concentrations of the prodrug and active parent (SNX-2112) were determined by LC-MS/MS following protein precipitation with acetonitrile. [1]
For the HT-29 xenograft efficacy study, female nude mice (nu/nu) bearing subcutaneous HT-29 human colon carcinoma tumors (1 mm³ fragments implanted in right flank) were treated when tumor volumes reached 80-120 mm³. Micronized PF-04929113 mesylate (CAS#: 1173111-67-5) was formulated in 1% microcrystalline cellulose/0.5% Tween80 in water. Dosing was by oral gavage with a schedule of (od×3)/2×3 weeks (every other day for three doses, followed by two days without treatment, for three cycles). Doses tested: 5, 10, 25, and 50 mg/kg in a volume of 10 mL/kg. Tumors were measured twice weekly using calipers. [1]
ADME/Pharmacokinetics
Following oral administration of PF-04929113 mesylate (CAS#: 1173111-67-5) at 10 mg/kg in female mice: Tmax = 1 h, Cmax = 747 ng/mL, AUCinf = 3698 h·ng/mL, T1/2 = 2.5 h, VZ_F_obs = 9282 mL/kg, CL_F_obs = 2520 mL/h/kg. At 25 mg/kg oral: Tmax = 1 h, Cmax = 1481 ng/mL, AUCinf = 11004 h·ng/mL, T1/2 = 2.5 h, VZ_F_obs = 9954 mL/kg, CL_F_obs = 2272 mL/h/kg. At 50 mg/kg oral: Tmax = 2 h, Cmax = 2401 ng/mL, AUCinf = 15251 h·ng/mL, T1/2 = 3.3 h, VZ_F_obs = 3395 mL/kg, CL_F_obs = 1988 mL/h/kg. Following IV administration at 10 mg/kg: T1/2 = 0.8 h, VZ_F_obs = 846 mL/kg, CL_F_obs = 2054 mL/h/kg. Oral bioavailability was approximately 5%. Prodrug levels were below the lower limit of quantitation at all time points, indicating rapid conversion to the active parent SNX-2112. [1]
Toxicity/Toxicokinetics
PF-04929113 mesylate (CAS#: 1173111-67-5) was well tolerated in mouse xenograft studies at oral doses up to 50 mg/kg. No treatment-related deaths were observed. Based on body weight measurements and clinical observations, the compound was well tolerated at all dose levels tested (5, 10, 25, 50 mg/kg). No specific toxicity data (e.g., LD50, hepatotoxicity) are reported. [1]
References
: J Med Chem. 2009;52(14):4288-305; Blood. 2009;113(4):846-55; Clin Cancer Res. 2011;17(8):2301-13.
Additional Infomation
SNX-5422 mesylate, an Hsp90 inhibitor, is a highly bioavailable synthetic prodrug that targets human heat shock protein 90 (Hsp90) and possesses potential antitumor activity. Although its mechanism of action is not fully elucidated, SNX-5422 is rapidly converted to SNX-2112, which accumulates in tumor tissues at a faster rate than in normal tissues. SNX-2112 inhibits Hsp90, which may lead to proteasomal degradation of oncogenic substrate proteins, including HER2/ERBB2, and inhibits tumor cell proliferation. Hsp90 is a molecular chaperone that plays a crucial role in the conformational maturation of oncogenic signaling proteins such as HER2/ERBB2, AKT, RAF1, BCR-ABL, and mutant p53, as well as many other molecules that play important roles in cell cycle regulation or immune responses.
PF-04929113 mesylate (CAS#: 1173111-67-5) (SNX-5422) is a prodrug designed to improve oral bioavailability of the poorly crystalline parent compound SNX-2112 (9). The prodrug is rapidly and completely converted to the active parent in vivo after oral and intravenous dosing. It is a highly selective Hsp90 inhibitor with no significant off-target interactions when screened against 75 enzymes and receptors at 1 μM (no inhibitory activity greater than 20%), and no significant inhibition against a panel of 9 cytochrome P450 isozymes. It is stable to human liver microsome metabolism (88% remaining after 1 h in S9 fractions). [1]
These protocols are for reference only. InvivoChem does not independently validate these methods.
Physicochemical Properties
Molecular Formula
C26H34F3N5O7S
Molecular Weight
617.64
Exact Mass
617.213
CAS #
1173111-67-5
Related CAS #
908115-27-5;1173111-67-5 (mesylate);
PubChem CID
44195570
Appearance
Typically exists as solid at room temperature
LogP
5.612
Hydrogen Bond Donor Count
4
Hydrogen Bond Acceptor Count
13
Rotatable Bond Count
7
Heavy Atom Count
42
Complexity
969
Defined Atom Stereocenter Count
0
SMILES
S(C([H])([H])[H])(=O)(=O)O[H].FC(C1C2C(C([H])([H])C(C([H])([H])[H])(C([H])([H])[H])C([H])([H])C=2N(C2C([H])=C([H])C(C(N([H])[H])=O)=C(C=2[H])N([H])C2([H])C([H])([H])C([H])([H])C([H])(C([H])([H])C2([H])[H])OC(C([H])([H])N([H])[H])=O)N=1)=O)(F)F
InChi Key
NVGFSTMGRRADRG-UHFFFAOYSA-N
InChi Code
InChI=1S/C25H30F3N5O4.CH4O3S/c1-24(2)10-18-21(19(34)11-24)22(25(26,27)28)32-33(18)14-5-8-16(23(30)36)17(9-14)31-13-3-6-15(7-4-13)37-20(35)12-29;1-5(2,3)4/h5,8-9,13,15,31H,3-4,6-7,10-12,29H2,1-2H3,(H2,30,36);1H3,(H,2,3,4)
Chemical Name
[4-[2-carbamoyl-5-[6,6-dimethyl-4-oxo-3-(trifluoromethyl)-5,7-dihydroindazol-1-yl]anilino]cyclohexyl] 2-aminoacetate;methanesulfonic acid
Synonyms
SNX-5422 mesylate;SNX5422; SNX 5422; PF4929113; PF-4929113 mesylate; PF 4929113; PF04929113; PF 04929113; PF-04929113mesylate
HS Tariff Code
2934.99.9001
Storage

Powder      -20°C    3 years

                     4°C     2 years

In solvent   -80°C    6 months

                  -20°C    1 month

Shipping Condition
Room temperature (This product is stable at ambient temperature for a few days during ordinary shipping and time spent in Customs)
Solubility Data
Solubility (In Vitro)
DMSO: 5 mg/mL (9.6 mM)
Water:<1 mg/mL
Ethanol: 3 mg/mL (5.2 mM)
Solubility (In Vivo)
0.5% CMC+0.25% Tween 80: 25mg/mL
 (Please use freshly prepared in vivo formulations for optimal results.)
Preparing Stock Solutions 1 mg 5 mg 10 mg
1 mM 1.6191 mL 8.0953 mL 16.1907 mL
5 mM 0.3238 mL 1.6191 mL 3.2381 mL
10 mM 0.1619 mL 0.8095 mL 1.6191 mL

*Note: Please select an appropriate solvent for the preparation of stock solution based on your experiment needs. For most products, DMSO can be used for preparing stock solutions (e.g. 5 mM, 10 mM, or 20 mM concentration); some products with high aqueous solubility may be dissolved in water directly. Solubility information is available at the above Solubility Data section. Once the stock solution is prepared, aliquot it to routine usage volumes and store at -20°C or -80°C. Avoid repeated freeze and thaw cycles.

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Method for preparing DMSO stock solution mg drug pre-dissolved in μL DMSO (stock solution concentration mg/mL). Please contact us first if the concentration exceeds the DMSO solubility of the batch of drug.

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Biological Data
  • PF-04929113 mesylate

    PF-04928473 induces degradation of Hsp90 client proteins, inhibits AR transactivation and nuclear translocation, and downregulates AR-regulated genes.Clin Cancer Res.2011 Apr 15;17(8):2301-13.
  • PF-04929113 mesylate

    PF-04929113 significantly delays castrate-resistant LNCaP tumor growth and prolongs cancer specific survival.Clin Cancer Res.2011 Apr 15;17(8):2301-13.
  • PF-04929113 mesylate

    Serum PSA changes in PF-04929113-treated mice do not correlate to suppression of tumor volume progression.Clin Cancer Res.2011 Apr 15;17(8):2301-13.
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