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PEPA

Cat No.:V32952 Purity: ≥98%
PEPA is an allosteric modulator of AMPAR and can bind to the LBDs domain of GluA2o/GluA3o.
PEPA
PEPA Chemical Structure CAS No.: 141286-78-4
Product category: iGluR
This product is for research use only, not for human use. We do not sell to patients.
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Product Description
PEPA is an allosteric modulator of AMPAR and can bind to the LBDs domain of GluA2o/GluA3o.
Biological Activity I Assay Protocols (From Reference)
Targets
Allosteric potentiator of AMPA receptors, preferentially acting on flop splice variants [1]
ln Vitro
In rat hippocampal cultures, PEPA (100 µM) applied alone did not elicit an increase in intracellular free calcium ion concentration in any of the cells tested [1]
PEPA (25 µM) potentiated the AMPA (1 µM)-induced increase in the 340/380 fluorescence ratio (indicative of increased intracellular calcium) in a small number of hippocampal cells. This potentiation was observed in a much larger number of cells when 150 µM PEPA was applied [1]
In rat hippocampal cultures, PEPA (100 µM) potentiated the AMPA (10 µM)-induced increase in intracellular free calcium concentration ([Ca²⁺]i), with the potentiation factor varying between 1.0-fold (no potentiation) and 27.7-fold across different cells (n=80) [1]
The ratio of potentiation by PEPA (100 µM) to that by cyclothiazide (100 µM) (P/C ratio) for the AMPA (10 µM) response in hippocampal cells varied between 0 and 2.15, revealing cell-to-cell heterogeneity. Populations were identified with low P/C ratios (<0.15; 34% of cells) and high P/C ratios (≥2.00; 1% of cells) [1]
In Xenopus oocytes expressing various AMPA receptor subunit combinations, PEPA (100 µM) potentiated the AMPA (10 µM)-induced currents. The potentiation varied with subunit and splice-variant composition. For example, potentiation was 1.90-fold in oocytes expressing GluR1-flip alone, and 2.20-fold in oocytes expressing GluR1-flop alone. In oocytes expressing GluR1-flip and GluR2-flip (1:4 ratio), potentiation was 6.41-fold [1]
The P/C ratio in Xenopus oocytes also varied with subunit composition. Oocytes expressing predominantly flip variants (e.g., GluR1-flip + GluR2-flip, 1:4) exhibited low P/C ratios (0.19), while those expressing predominantly flop variants (e.g., GluR1-flop alone) exhibited high P/C ratios (2.20) [1]
Cell Assay
For intracellular calcium imaging in hippocampal cultures, cells (8 days in vitro) were loaded with 10 µM Fura-2 AM for 30-40 minutes at 37°C. Cells were perfused with a control medium containing tetrodotoxin. PEPA was initially dissolved in DMSO at 100 mM and then diluted into the control medium to the final working concentration. Cells were examined under epifluorescence illumination with alternating 340 nm and 380 nm excitation. The ratio of fluorescence at these wavelengths (340/380 ratio) was monitored and used as an indicator of intracellular calcium concentration. AMPA and PEPA were applied via perfusion [1]
For two-electrode voltage clamp recordings in Xenopus oocytes, cRNAs encoding specific AMPA receptor subunits (e.g., GluR1, GluR2, GluR3 flip/flop variants) were injected into oocytes. After incubation for several days, oocytes were voltage-clamped at -100 mV and perfused with frog Ringer's solution. AMPA, PEPA, and cyclothiazide were applied via perfusion. The current responses were recorded, and potentiation was calculated as the ratio of the current amplitude induced by (AMPA + potentiator) to the current amplitude induced by AMPA alone [1]
References

[1]. Pharmacological detection of AMPA receptor heterogeneity by use of two allosteric potentiators in rat hippocampal cultures. Br J Pharmacol. 1998 Apr;123(7):1294-303.

[2]. Molecular mechanism of flop selectivity and subsite recognition for an AMPA receptor allosteric modulator: structures of GluA2 and GluA3 in complexes with PEPA. Biochemistry. 2010 Apr 6;49(13):2843-50.

[3]. Facilitating actions of an AMPA receptor potentiator upon extinction of contextually conditioned fear response in stressed mice. Neurosci Lett. 2011 Jan 25;488(3):242-6.

[4]. Positive modulation of AMPA receptors prevents downregulation of GluR2 expression and activates the Lyn-ERK1/2-CREB signaling in rat brain ischemia. Hippocampus. 2010 Jan;20(1):65-77.

Additional Infomation
PEPA (4-[2-(benzenesulfonylamino)ethylthio]-2,6-difluorophenoxyacetamide) is a novel allosteric enhancer of AMPA receptors that inhibits receptor desensitization[1]. PEPA preferentially acts on flop splice variants of AMPA receptors, and its potency is approximately 100 times that of aniracetam, another known enhancer that preferentially acts on flop[1]. Furthermore, PEPA exhibits stronger desensitization inhibition on receptors containing GluR3 and GluR4 subunits compared to receptors containing the GluR1 subunit[1]. Comparing the enhancing effects of PEPA and cyclothiazide (which preferentially acts on flop variants) by using the P/C ratio helps to detect intercellular heterogeneity in the composition of functional AMPA receptors in hippocampal cultures.[1]
These protocols are for reference only. InvivoChem does not independently validate these methods.
Physicochemical Properties
Molecular Formula
C16H16F2N2O4S2
Molecular Weight
402.43604850769
Exact Mass
402.052
CAS #
141286-78-4
PubChem CID
6603828
Appearance
White to off-white solid powder
LogP
4.071
Hydrogen Bond Donor Count
2
Hydrogen Bond Acceptor Count
8
Rotatable Bond Count
9
Heavy Atom Count
26
Complexity
541
Defined Atom Stereocenter Count
0
InChi Key
GTACSIONMHMRPD-UHFFFAOYSA-N
InChi Code
InChI=1S/C16H16F2N2O4S2/c17-13-8-11(9-14(18)16(13)24-10-15(19)21)25-7-6-20-26(22,23)12-4-2-1-3-5-12/h1-5,8-9,20H,6-7,10H2,(H2,19,21)
Chemical Name
2-[4-[2-(benzenesulfonamido)ethylsulfanyl]-2,6-difluorophenoxy]acetamide
HS Tariff Code
2934.99.9001
Storage

Powder      -20°C    3 years

                     4°C     2 years

In solvent   -80°C    6 months

                  -20°C    1 month

Shipping Condition
Room temperature (This product is stable at ambient temperature for a few days during ordinary shipping and time spent in Customs)
Solubility Data
Solubility (In Vitro)
DMSO : ~50 mg/mL (~124.24 mM)
Solubility (In Vivo)
Solubility in Formulation 1: ≥ 2.5 mg/mL (6.21 mM) (saturation unknown) in 10% DMSO + 40% PEG300 + 5% Tween80 + 45% Saline (add these co-solvents sequentially from left to right, and one by one), clear solution.
For example, if 1 mL of working solution is to be prepared, you can add 100 μL of 25.0 mg/mL clear DMSO stock solution to 400 μL PEG300 and mix evenly; then add 50 μL Tween-80 to the above solution and mix evenly; then add 450 μL normal saline to adjust the volume to 1 mL.
Preparation of saline: Dissolve 0.9 g of sodium chloride in 100 mL ddH₂ O to obtain a clear solution.

Solubility in Formulation 2: ≥ 2.5 mg/mL (6.21 mM) (saturation unknown) in 10% DMSO + 90% (20% SBE-β-CD in Saline) (add these co-solvents sequentially from left to right, and one by one), clear solution.
For example, if 1 mL of working solution is to be prepared, you can add 100 μL of 25.0 mg/mL clear DMSO stock solution to 900 μL of 20% SBE-β-CD physiological saline solution and mix evenly.
Preparation of 20% SBE-β-CD in Saline (4°C,1 week): Dissolve 2 g SBE-β-CD in 10 mL saline to obtain a clear solution.

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Solubility in Formulation 3: ≥ 2.5 mg/mL (6.21 mM) (saturation unknown) in 10% DMSO + 90% Corn Oil (add these co-solvents sequentially from left to right, and one by one), clear solution.
For example, if 1 mL of working solution is to be prepared, you can add 100 μL of 25.0 mg/mL clear DMSO stock solution to 900 μL of corn oil and mix evenly.


 (Please use freshly prepared in vivo formulations for optimal results.)
Preparing Stock Solutions 1 mg 5 mg 10 mg
1 mM 2.4848 mL 12.4242 mL 24.8484 mL
5 mM 0.4970 mL 2.4848 mL 4.9697 mL
10 mM 0.2485 mL 1.2424 mL 2.4848 mL

*Note: Please select an appropriate solvent for the preparation of stock solution based on your experiment needs. For most products, DMSO can be used for preparing stock solutions (e.g. 5 mM, 10 mM, or 20 mM concentration); some products with high aqueous solubility may be dissolved in water directly. Solubility information is available at the above Solubility Data section. Once the stock solution is prepared, aliquot it to routine usage volumes and store at -20°C or -80°C. Avoid repeated freeze and thaw cycles.

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Note: Chemical formula is case sensitive: C12H18N3O4  c12h18n3o4
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In vivo Formulation Calculator (Clear solution)
Step 1: Enter information below (Recommended: An additional animal to make allowance for loss during the experiment)
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Calculation results

Working concentration mg/mL;

Method for preparing DMSO stock solution mg drug pre-dissolved in μL DMSO (stock solution concentration mg/mL). Please contact us first if the concentration exceeds the DMSO solubility of the batch of drug.

Method for preparing in vivo formulation:Take μL DMSO stock solution, next add μL PEG300, mix and clarify, next addμL Tween 80, mix and clarify, next add μL ddH2O,mix and clarify.

(1) Please be sure that the solution is clear before the addition of next solvent. Dissolution methods like vortex, ultrasound or warming and heat may be used to aid dissolving.
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