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Isobavachin

Cat No.:V34212 Purity: ≥98%
Isobavachin is natural product of the flavonoid class withantioxidant activity.
Isobavachin
Isobavachin Chemical Structure CAS No.: 31524-62-6
Product category: Natural Products
This product is for research use only, not for human use. We do not sell to patients.
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Product Description

Isobavachin is natural product of the flavonoid class with antioxidant activity. It can be isolated from Psoralea morisiana and can promote neuronal differentiation and the potential role of its protein prenylation.


Isobavachin (IBA) is a prenylflavonid compound with a prenyl group at position 8 of ring A. It was used to evaluate possible differentiation effects and potential mechanisms in mouse embryonic stem (ES) cells. The compound’s structure-related neuronal differentiation mechanisms are poorly understood, and it was hypothesized that protein prenylation may be associated with the neuronal differentiation induced by this prenylflavonid. [1]
Biological Activity I Assay Protocols (From Reference)
Targets
Protein prenylation (via geranylgeranyltransferase I, GGTase I) – involved in the promoting effect of Isobavachin on neuronal differentiation. [1]
Mitogen-activated protein kinase (MAPK) pathway components: ERK, p38, JNK – their phosphorylation states are modulated by Isobavachin. [1]
ln Vitro
Isobavachin (10⁻⁷ mol/L) significantly increased the population of neuron‑like cells (axons ≥3 times longer than cell bodies) from mouse ES cells compared to solvent control. Neurons expressing β‑tubulin III and astrocytes expressing GFAP were more obvious after IBA treatment. [1]
Nestin (neural progenitor marker) was highly expressed in embryoid bodies (EBs) at d4 and d8+0 with or without IBA treatment, but decreased gradually during differentiation; Oct3/4 (pluripotency marker) disappeared at terminal differentiation. mRNA and protein levels of β‑tubulin III were expressed from EB stage to terminal differentiation; GFAP was upregulated in a time‑dependent manner (d8+5 and d8+10). NEFM (neurofilament marker) was upregulated by Isobavachin. [1]
Co‑treatment with GGTI‑298 (10⁻⁶ mol/L, a GGTase I inhibitor) selectively abolished the IBA‑induced neuronal and astrocyte differentiation, while GGTI‑298 had no effect on RA‑induced differentiation, indicating that the promoting effects of IBA and RA act via different pathways. [1]
In the MAPK pathway, p38 and JNK phosphorylation were down‑regulated, while ERK phosphorylation was up‑regulated after Isobavachin treatment at different neuronal differentiation passages (ES, EB d4, d8+0, d8+5, d8+10). ERK phosphorylation was high in ES cells, low in early EB (d4, d8+0), and increased greatly during late neuronal differentiation (d8+5, d8+10). p38 phosphorylation was detected in ES and EB stages and then down‑regulated on d8+5 and d8+10; little p38 phosphorylation was detected during the entire differentiation course with IBA. JNK phosphorylation was inhibited during neuronal differentiation compared to early stages. [1]
Cell Assay
Mouse ES cells (D3 line) were routinely cultured on primary mouse embryonic fibroblasts in DMEM supplemented with 10% FBS, 0.1 mmol/L β‑mercaptoethanol, 1× non‑essential amino acids, and 1×10⁶ U/L LIF. A hanging drop method was used to initiate embryoid body formation. Drops (30 μL) containing approximately 900 ES cells were cultured for 2 days in hanging drops. After EB formation, they were transferred to agar‑coated Petri dishes and cultured in suspension for another 2 days. On day 4, Isobavachin (10⁻⁷ mol/L) was added, and EBs were cultured in suspension for another 4 days. GGTI‑298 (10⁻⁶ mol/L) was added into the medium with IBA during differentiation when indicated. On d8+0, EBs were plated on poly‑D‑lysine‑coated culture plates in differentiation medium (neural basal medium + 1% B27 supplement) with IBA to induce neuronal differentiation. 10⁻⁷ mol/L retinoic acid was used as positive control, and 0.1% DMSO as solvent control. [1]
Morphological evaluation: inverted phase‑contrast microscope; cells with axons ≥3 times longer than cell bodies were considered neuron‑like cells. [1]
Immunocytochemistry: cultures were fixed in ice‑cold methanol with 0.3% hydrogen peroxide, blocked with 10% FBS in PBS, incubated with primary antibodies (β‑tubulin III 1:50, GFAP 1:50) overnight at 4°C, then with fluorescent secondary antibodies (1:200) for 2 h, and nuclei stained with DAPI (2 μg/mL). [1]
Western blot: cells lysed in extraction buffer (Tris‑HCl pH7.5, 20 mmol/L NaCl 150 mmol/L, EDTA 1 mmol/L, Triton X‑100 1%, sodium deoxycholate 0.5%, PMSF 1 mmol/L, leupeptin 10 μg/mL, aprotinin 30 μg/mL). Protein concentration quantified by modified Lowry assay. 40 μg protein per lane were separated by SDS‑PAGE, transferred to nitrocellulose membrane, blocked with 5% nonfat milk in TBS/T, incubated with primary antibodies (NEFM 1:500, β‑tubulin III 1:1000, GFAP 1:1000, p38 1:500, phos‑p38 1:500, ERK 1:1000, phos‑ERK 1:500, JNK 1:500, phos‑JNK 1:500, GAPDH 1:10000) overnight at 4°C, then with HRP‑conjugated secondary antibodies (1:5000) for 1 h, and detected by chemiluminescence. [1]
Semi‑quantitative RT‑PCR: total RNA extracted with Trizol, first‑strand cDNA synthesized with oligo(dT)6 primer and M‑MuLV reverse transcriptase. PCR performed with specific primers for GAPDH, β‑tubulin III, GFAP, Oct3/4, Nestin (conditions: 35 cycles, annealing temperatures 59‑69°C, Mg²⁺ 3 mmol/L). Products analyzed on 1.5% agarose gel with ethidium bromide staining. [1]
References

[1]. Promoting effects of isobavachin on neurogenesis of mouse embryonic stem cells were associated with protein prenylation. Acta Pharmacol Sin. 2011 Apr;32(4):425-32.

[2]. Antioxidant properties of extracts and compounds from Psoralea morisiana. European Journal of Lipid Science and Technology. 2005.

Additional Infomation
Isopavonicaine belongs to the flavanone class of compounds. It has been reported to be found in licorice, ursaria, and other organisms with relevant data.
Isobavachin can facilitate mouse ES cell differentiation into multiple neuronal cell subtypes (neurons and astrocytes). The mechanism involves protein prenylation, subsequently leading to phos‑ERK activation and phos‑p38 off pathway. The prenyl group at position 8 of ring A of IBA is capable of protein prenylation during neurogenesis of mouse ES cells. The study suggests that IBA and its derivatives are promising candidates for developing methods to derive more neuronal or neural progenitor cells for cell replacement therapy. [1]
These protocols are for reference only. InvivoChem does not independently validate these methods.
Physicochemical Properties
Molecular Formula
C20H20O4
Molecular Weight
324.3704
Exact Mass
324.136
CAS #
31524-62-6
PubChem CID
193679
Appearance
Off-white to light yellow solid
Density
1.2±0.1 g/cm3
Boiling Point
558.3±50.0 °C at 760 mmHg
Melting Point
187-188℃
Flash Point
202.1±23.6 °C
Vapour Pressure
0.0±1.6 mmHg at 25°C
Index of Refraction
1.622
LogP
4.85
Hydrogen Bond Donor Count
2
Hydrogen Bond Acceptor Count
4
Rotatable Bond Count
3
Heavy Atom Count
24
Complexity
474
Defined Atom Stereocenter Count
1
SMILES
CC(=CCC1=C2C(=CC=C1O)C(=O)C[C@@H](C3=CC=C(C=C3)O)O2)C
InChi Key
KYFBXCHUXFKMGQ-IBGZPJMESA-N
InChi Code
InChI=1S/C20H20O4/c1-12(2)3-8-15-17(22)10-9-16-18(23)11-19(24-20(15)16)13-4-6-14(21)7-5-13/h3-7,9-10,19,21-22H,8,11H2,1-2H3/t19-/m0/s1
Chemical Name
(2S)-7-hydroxy-2-(4-hydroxyphenyl)-8-(3-methylbut-2-enyl)-2,3-dihydrochromen-4-one
HS Tariff Code
2934.99.9001
Storage

Powder      -20°C    3 years

                     4°C     2 years

In solvent   -80°C    6 months

                  -20°C    1 month

Note: This product requires protection from light (avoid light exposure) during transportation and storage.
Shipping Condition
Room temperature (This product is stable at ambient temperature for a few days during ordinary shipping and time spent in Customs)
Solubility Data
Solubility (In Vitro)
DMSO : ~100 mg/mL (~308.29 mM)
Solubility (In Vivo)
Solubility in Formulation 1: ≥ 2.5 mg/mL (7.71 mM) (saturation unknown) in 10% DMSO + 40% PEG300 + 5% Tween80 + 45% Saline (add these co-solvents sequentially from left to right, and one by one), clear solution.
For example, if 1 mL of working solution is to be prepared, you can add 100 μL of 25.0 mg/mL clear DMSO stock solution to 400 μL PEG300 and mix evenly; then add 50 μL Tween-80 to the above solution and mix evenly; then add 450 μL normal saline to adjust the volume to 1 mL.
Preparation of saline: Dissolve 0.9 g of sodium chloride in 100 mL ddH₂ O to obtain a clear solution.

Solubility in Formulation 2: ≥ 2.5 mg/mL (7.71 mM) (saturation unknown) in 10% DMSO + 90% (20% SBE-β-CD in Saline) (add these co-solvents sequentially from left to right, and one by one), clear solution.
For example, if 1 mL of working solution is to be prepared, you can add 100 μL of 25.0 mg/mL clear DMSO stock solution to 900 μL of 20% SBE-β-CD physiological saline solution and mix evenly.
Preparation of 20% SBE-β-CD in Saline (4°C,1 week): Dissolve 2 g SBE-β-CD in 10 mL saline to obtain a clear solution.

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Solubility in Formulation 3: ≥ 2.5 mg/mL (7.71 mM) (saturation unknown) in 10% DMSO + 90% Corn Oil (add these co-solvents sequentially from left to right, and one by one), clear solution.
For example, if 1 mL of working solution is to be prepared, you can add 100 μL of 25.0 mg/mL clear DMSO stock solution to 900 μL of corn oil and mix evenly.


 (Please use freshly prepared in vivo formulations for optimal results.)
Preparing Stock Solutions 1 mg 5 mg 10 mg
1 mM 3.0829 mL 15.4145 mL 30.8290 mL
5 mM 0.6166 mL 3.0829 mL 6.1658 mL
10 mM 0.3083 mL 1.5414 mL 3.0829 mL

*Note: Please select an appropriate solvent for the preparation of stock solution based on your experiment needs. For most products, DMSO can be used for preparing stock solutions (e.g. 5 mM, 10 mM, or 20 mM concentration); some products with high aqueous solubility may be dissolved in water directly. Solubility information is available at the above Solubility Data section. Once the stock solution is prepared, aliquot it to routine usage volumes and store at -20°C or -80°C. Avoid repeated freeze and thaw cycles.

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Note: Chemical formula is case sensitive: C12H18N3O4  c12h18n3o4
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In vivo Formulation Calculator (Clear solution)
Step 1: Enter information below (Recommended: An additional animal to make allowance for loss during the experiment)
Step 2: Enter in vivo formulation (This is only a calculator, not the exact formulation for a specific product. Please contact us first if there is no in vivo formulation in the solubility section.)
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Calculation results

Working concentration mg/mL;

Method for preparing DMSO stock solution mg drug pre-dissolved in μL DMSO (stock solution concentration mg/mL). Please contact us first if the concentration exceeds the DMSO solubility of the batch of drug.

Method for preparing in vivo formulation:Take μL DMSO stock solution, next add μL PEG300, mix and clarify, next addμL Tween 80, mix and clarify, next add μL ddH2O,mix and clarify.

(1) Please be sure that the solution is clear before the addition of next solvent. Dissolution methods like vortex, ultrasound or warming and heat may be used to aid dissolving.
             (2) Be sure to add the solvent(s) in order.

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