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E3 ligase Ligand 5

Alias: E3 ligase Ligand 5; E3L 4133; E3L4133; E3L-4133
Cat No.:V4061 Purity: ≥98%
E3 ligase Ligand 5 is an E3 ligase Ligand that can be used in the synthesis of PROTACs (proteolysis targeting chimeras) to engage an E3 ubiquitin ligase.
E3 ligase Ligand 5
E3 ligase Ligand 5 Chemical Structure CAS No.: 1264754-13-3
Product category: ERR
This product is for research use only, not for human use. We do not sell to patients.
Size Price Stock Qty
5mg
10mg
25mg
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Purity & Quality Control Documentation

Purity: ≥98%

Product Description
E3 ligase Ligand 5 is an E3 ligase ligand that interacts with an E3 ubiquitin ligase during the production of PROTACs (proteolysis targeting chimeras). It is specifically an antagonist of estrogen-related receptor α (ERRα), with IC50 values for ERRα and ERRγ of 0.04 and 2.8 μM, respectively. A two-headed molecule called PROTAC can eliminate particular undesirable proteins. A PROTAC functions by inducing selective intracellular proteolysis, as opposed to conventional enzyme inhibition. Two covalently bonded protein-binding molecules make up PROTACs: one molecule attaches to a target protein that is intended to be degraded, and the other is able to interact with an E3 ubiquitin ligase. The target protein is ubiquitinated upon the recruitment of the E3 ligase, which subsequently leads to the proteasome's degradation of the target protein. There are currently many efforts underway to retool previously unproductive inhibitor molecules as PROTACs for next-generation drugs, since PROTACs need only to bind their targets with high selectivity (rather than inhibit the target protein's enzymatic activity).
E3 ligase Ligand 5 (CAS# 1264754-13-3), also known as E3L-4133, is a ligand for E3 ubiquitin ligases that can be used in PROTAC (proteolysis targeting chimera) technology. With a molecular formula of C₁₉H₁₁F₃N₂O₄S and a molecular weight of 420.36 g/mol, it is specifically an antagonist of estrogen-related receptor α (ERRα). E3 ligase Ligand 5 is a research compound used for targeted protein degradation.
Biological Activity I Assay Protocols (From Reference)
Targets
ERRα (IC50 = 0.04 μM); ERRγ (IC50 = 2.8 μM)
E3 ligase Ligand 5 targets the estrogen-related receptor α (ERRα), an orphan nuclear receptor involved in energy metabolism and cancer. It is an antagonist of ERRα with an IC₅₀ of 0.04 μM, and it also inhibits ERRγ with an IC₅₀ of 2.8 μM. As an E3 ligase ligand, it can recruit an E3 ubiquitin ligase to a target protein when incorporated into a PROTAC.
ln Vitro
In vitro, E3 ligase Ligand 5 is an ERRα antagonist with an IC₅₀ of 0.04 μM. It also inhibits ERRγ with an IC₅₀ of 2.8 μM. Its activity as an E3 ligase ligand is defined by its ability to engage an E3 ubiquitin ligase for PROTAC applications.
ln Vivo
E3 ligase Ligand 5 is not a therapeutic agent and does not have direct in vivo pharmacological activity. It is not administered to animals for therapeutic purposes. Its in vivo effects are determined by the PROTAC molecules that incorporate this ligand.
Enzyme Assay
In vitro ERRα binding assays for E3 ligase Ligand 5 are performed using purified recombinant ERRα protein or cell lysates expressing ERRα. Radioligand binding studies or fluorescence polarization assays are used to measure the binding affinity of the compound to ERRα. IC₅₀ values are calculated from competition binding curves.
Cell Assay
In vitro cell-based assays for E3 ligase Ligand 5 are performed using cell lines expressing ERRα. Cells are cultured in appropriate media and treated with E3 ligase Ligand 5 at various concentrations. ERRα transcriptional activity is assessed using reporter gene assays. Cell viability is measured by MTT assays.
Animal Protocol
In vivo animal studies for E3 ligase Ligand 5 are conducted using the PROTAC molecules that incorporate this ligand, rather than the ligand alone. Typical protocols involve administering the PROTAC to mice via intravenous, intraperitoneal, or oral routes. Target protein degradation is assessed in tissues by Western blot.
ADME/Pharmacokinetics
Specific pharmacokinetic properties of E3 ligase Ligand 5 are not extensively characterized, as it is a research tool rather than a therapeutic agent. It is soluble in DMSO and is typically formulated for in vivo administration as part of a PROTAC.
Toxicity/Toxicokinetics
Comprehensive toxicological data for E3 ligase Ligand 5 are not widely available in public literature. As a research compound, it is intended for laboratory use only and is not for human therapeutic use. Standard safety precautions should be followed when handling this compound. It is supplied with a purity of ≥98%.
References
US20160058872A1..
Additional Infomation
E3 ligase Ligand 5 is a ligand for E3 ubiquitin ligases used in PROTAC technology. It is also an ERRα antagonist with an IC₅₀ of 0.04 μM. It is extracted from patent US 20160058872A1. This product is for research use only.
These protocols are for reference only. InvivoChem does not independently validate these methods.
Physicochemical Properties
Molecular Formula
C₁₉H₁₁F₃N₂O₄S
Molecular Weight
420.36
Exact Mass
420.039
Elemental Analysis
54.29; H, 2.64; F, 13.56; N, 6.66; O, 15.22; S, 7.63
CAS #
1264754-13-3
Related CAS #
1264754-13-3
PubChem CID
46916268
Appearance
Light yellow to green yellow solid powder
Density
1.5±0.1 g/cm3
Index of Refraction
1.628
LogP
3.35
Hydrogen Bond Donor Count
1
Hydrogen Bond Acceptor Count
9
Rotatable Bond Count
4
Heavy Atom Count
29
Complexity
733
Defined Atom Stereocenter Count
0
SMILES
C(#N)C1=CC=C(OC2=CC=C(/C=C3\SC(=O)NC\3=O)C=C2OC)C(C(F)(F)F)=C1
InChi Key
OBBIOCQFTMNSJI-PXNMLYILSA-N
InChi Code
InChI=1S/C19H11F3N2O4S/c1-27-15-7-10(8-16-17(25)24-18(26)29-16)2-5-14(15)28-13-4-3-11(9-23)6-12(13)19(20,21)22/h2-8H,1H3,(H,24,25,26)/b16-8-
Chemical Name
4-[4-[(Z)-(2,4-dioxo-1,3-thiazolidin-5-ylidene)methyl]-2-methoxyphenoxy]-3-(trifluoromethyl)benzonitrile
Synonyms
E3 ligase Ligand 5; E3L 4133; E3L4133; E3L-4133
HS Tariff Code
2934.99.9001
Storage

Powder      -20°C    3 years

                     4°C     2 years

In solvent   -80°C    6 months

                  -20°C    1 month

Shipping Condition
Room temperature (This product is stable at ambient temperature for a few days during ordinary shipping and time spent in Customs)
Solubility Data
Solubility (In Vitro)
DMSO: ~10 mM
Water: N/A
Ethanol: N/A
Solubility (In Vivo)
Solubility in Formulation 1: ≥ 2.5 mg/mL (5.95 mM) (saturation unknown) in 10% DMSO + 40% PEG300 +5% Tween-80 + 45% Saline (add these co-solvents sequentially from left to right, and one by one), clear solution.
For example, if 1 mL of working solution is to be prepared, you can add 100 μL of 25.0 mg/mL clear DMSO stock solution to 400 μL PEG300 and mix evenly; then add 50 μL Tween-80 + to the above solution and mix evenly; then add 450 μL normal saline to adjust the volume to 1 mL.
Preparation of saline: Dissolve 0.9 g of sodium chloride in 100 mL ddH₂ O to obtain a clear solution.

 (Please use freshly prepared in vivo formulations for optimal results.)
Preparing Stock Solutions 1 mg 5 mg 10 mg
1 mM 2.3789 mL 11.8946 mL 23.7891 mL
5 mM 0.4758 mL 2.3789 mL 4.7578 mL
10 mM 0.2379 mL 1.1895 mL 2.3789 mL

*Note: Please select an appropriate solvent for the preparation of stock solution based on your experiment needs. For most products, DMSO can be used for preparing stock solutions (e.g. 5 mM, 10 mM, or 20 mM concentration); some products with high aqueous solubility may be dissolved in water directly. Solubility information is available at the above Solubility Data section. Once the stock solution is prepared, aliquot it to routine usage volumes and store at -20°C or -80°C. Avoid repeated freeze and thaw cycles.

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Working concentration mg/mL;

Method for preparing DMSO stock solution mg drug pre-dissolved in μL DMSO (stock solution concentration mg/mL). Please contact us first if the concentration exceeds the DMSO solubility of the batch of drug.

Method for preparing in vivo formulation:Take μL DMSO stock solution, next add μL PEG300, mix and clarify, next addμL Tween 80, mix and clarify, next add μL ddH2O,mix and clarify.

(1) Please be sure that the solution is clear before the addition of next solvent. Dissolution methods like vortex, ultrasound or warming and heat may be used to aid dissolving.
             (2) Be sure to add the solvent(s) in order.

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