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Cyclosporin D

Alias: Cyclosporin DVal2-cyclosporine
Cat No.:V40415 Purity: ≥98%
Cyclosporin D is a nonpolar cyclic oligopeptide and a novel metabolite of Cyclosporin A, which is an immunosuppressant agentthat binds cyclophilin D, inhibiting the phosphatase activity of calcineurin in T cells.
Cyclosporin D
Cyclosporin D Chemical Structure CAS No.: 63775-96-2
Product category: NFAT
This product is for research use only, not for human use. We do not sell to patients.
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Product Description
Cyclosporin D is a nonpolar cyclic oligopeptide and a novel metabolite of Cyclosporin A, which is an immunosuppressant agent that binds cyclophilin D, inhibiting the phosphatase activity of calcineurin in T cells. Cyclosporin D is a minor analogue of the cyclosporin complex produced by Trichoderma.
Cyclosporin D is a nonpolar cyclic oligopeptide and a minor analogue of the cyclosporin complex produced by Trichoderma. It is a metabolite of Cyclosporin A and displays weak immunosuppressant activity. Cyclosporin D has a molecular weight of 1216.64 g/mol and molecular formula C63H113N11O12. It is used as an internal standard for the quantification of Cyclosporin A and in research to compare the biological activities of various cyclosporin molecules.
Biological Activity I Assay Protocols (From Reference)
Targets
Cyclosporin D targets cyclophilin D, similar to Cyclosporin A, which binds cyclophilin and inhibits the phosphatase activity of calcineurin in T cells. However, Cyclosporin D displays only about 10% of the immunosuppressive activity of Cyclosporin A. The compound binds to cyclophilin D, a mitochondrial protein involved in the regulation of the mitochondrial permeability transition pore. The weak immunosuppressant activity makes it useful for comparative studies of cyclosporin analogs.
ln Vitro
In vitro, EF-2 phosphorylation that is dependent on Ca2+/calmodulin is inhibited by cyclosporin D [1].
In vitro studies have demonstrated that Cyclosporin D is a weak immunosuppressant compared to Cyclosporin A. It displays about 10% of the immunosuppressive activity of Cyclosporin A. Cyclosporin D binds cyclophilin D and inhibits calcineurin activity, but with lower potency. The compound is used as an internal standard for the quantification of Cyclosporin A in analytical methods. It is also used in research to compare the biological activities of various cyclosporin molecules.
ln Vivo
In vivo biological effects of phorbol ester TPA on mouse skin are strongly inhibited by cyclosporine D [1].
In vivo studies of Cyclosporin D are limited due to its weak immunosuppressant activity. It is primarily used as an analytical standard and research tool rather than a therapeutic agent. As a metabolite of Cyclosporin A, it may be present in vivo following Cyclosporin A administration. Its weak activity compared to Cyclosporin A makes it less relevant for therapeutic applications. The compound is used in research to study protein-protein interactions and the structure-activity relationships of cyclosporin analogs.
Enzyme Assay
In vitro enzyme/receptor binding (non-cell) assays for Cyclosporin D typically involve binding studies with cyclophilin D. Recombinant cyclophilin D is incubated with increasing concentrations of Cyclosporin D (0.1 nM - 10 μM) and a fixed concentration of a labeled cyclosporin analog or a fluorescent probe in binding buffer at room temperature for 1-2 hours. Bound and free ligand are separated by filtration or by fluorescence polarization. Binding affinity (Kd) is determined from saturation or competition binding curves. Calcineurin inhibition assays can be performed using recombinant calcineurin and a phosphopeptide substrate, with phosphate release measured by colorimetric or malachite green assays. IC50 values are calculated from dose-response curves.
Cell Assay
For in vitro cell-based assays, T cells or other immune cells are cultured in appropriate media. Cells are treated with Cyclosporin D at concentrations ranging from 0.1 nM - 10 μM for 24-72 hours. T cell activation is stimulated by treatment with phytohemagglutinin (PHA) or anti-CD3/anti-CD28 antibodies. Immunosuppressant activity is measured by assessing T cell proliferation (³H-thymidine incorporation or CFSE dilution) and cytokine production (IL-2, IFN-γ) by ELISA. Cyclosporin A is used as a positive control. The weak activity of Cyclosporin D (~10% of Cyclosporin A) is confirmed in these assays.
Animal Protocol
In vivo animal studies with Cyclosporin D are limited. The compound could be administered orally or intraperitoneally to rodents to study its immunosuppressive effects, but its weak activity makes it less useful for therapeutic studies. It is primarily used as an analytical standard for pharmacokinetic studies of Cyclosporin A. Blood samples are collected for quantification by LC-MS/MS using Cyclosporin D as an internal standard. The compound is not intended for therapeutic use.
ADME/Pharmacokinetics
Cyclosporin D has a molecular weight of 1216.64 g/mol and molecular formula C63H113N11O12. It is a nonpolar cyclic oligopeptide. The compound is soluble in organic solvents such as methanol, ethanol, and DMSO. Storage recommendations: -20°C for long-term storage. Pharmacokinetic properties are similar to other cyclosporins, with extensive metabolism and primarily biliary excretion. The compound is used as an internal standard for the quantification of Cyclosporin A in analytical method development and validation.
Toxicity/Toxicokinetics
Cyclosporin D displays weak immunosuppressant activity, about 10% of that of Cyclosporin A. It is not used therapeutically and does not have the same toxicity profile as Cyclosporin A. The compound is considered safe for use as an analytical standard at the low concentrations typically used. Standard laboratory safety precautions should be followed when handling the compound. The compound is not intended for human therapeutic use.
References

[1]. The weak immunosuppressant cyclosporine D as well as the immunologically inactive cyclosporine H are potent inhibitors in vivo of phorbol ester TPA-induced biological effects in mouse skin and of Ca2+/calmodulin dependent EF-2 phosphorylation in vitro. Biochem Biophys Res Commun. 1988 Jan 29;150(2):545-51.

[2]. A new approach for the determination of immunosuppressive drugs using HPLC-MS/MS and Cs+ adducts. Ger Med Sci. 2006 Jan 18;4:Doc01.

[3]. Concentrations of cyclosporin A and FK506 that inhibit IL-2 induction in human T cells do not affect TGF-beta1 biosynthesis, whereas higher doses of cyclosporin A trigger apoptosis and release of preformed TGF-beta1. J Leukoc Biol. 2005 May;77(5):748-58. Epub 2005 Feb 16.

Additional Infomation
Cyclosporin D is a nonpolar cyclic oligopeptide and a minor analogue of the cyclosporin complex produced by Trichoderma. It is a metabolite of Cyclosporin A and displays weak immunosuppressant activity. Cyclosporin D displays about 10% of the immunosuppressive activity of Cyclosporin A. It is used as an internal standard for the quantification of Cyclosporin A and in research to compare the biological activities of various cyclosporin molecules and study protein-protein interactions. Cyclosporin D is not FDA-approved and is intended for research and analytical use only.
These protocols are for reference only. InvivoChem does not independently validate these methods.
Physicochemical Properties
Molecular Formula
C₆₃H₁₁₃N₁₁O₁₂
Molecular Weight
1216.64
Exact Mass
1215.857
CAS #
63775-96-2
PubChem CID
5287819
Appearance
White to off-white solid powder
Density
1.0±0.1 g/cm3
Boiling Point
1294.7±65.0 °C at 760 mmHg
Melting Point
148-151ºC
Flash Point
736.8±34.3 °C
Vapour Pressure
0.0±0.6 mmHg at 25°C
Index of Refraction
1.468
LogP
3.7
Hydrogen Bond Donor Count
5
Hydrogen Bond Acceptor Count
12
Rotatable Bond Count
15
Heavy Atom Count
86
Complexity
2360
Defined Atom Stereocenter Count
12
SMILES
C/C=C/C[C@@H](C)[C@H]([C@H]1C(=O)N[C@H](C(=O)N(CC(=O)N([C@H](C(=O)N[C@H](C(=O)N([C@H](C(=O)N[C@H](C(=O)N[C@@H](C(=O)N([C@H](C(=O)N([C@H](C(=O)N([C@H](C(=O)N1C)C(C)C)C)CC(C)C)C)CC(C)C)C)C)C)CC(C)C)C)C(C)C)CC(C)C)C)C)C(C)C)O
InChi Key
ZNVBEWJRWHNZMK-SYOLRUPNSA-N
InChi Code
InChI=1S/C63H113N11O12/c1-26-27-28-41(16)53(76)52-57(80)67-49(38(10)11)61(84)68(19)33-48(75)69(20)44(29-34(2)3)56(79)66-50(39(12)13)62(85)70(21)45(30-35(4)5)55(78)64-42(17)54(77)65-43(18)58(81)71(22)46(31-36(6)7)59(82)72(23)47(32-37(8)9)60(83)73(24)51(40(14)15)63(86)74(52)25/h26-27,34-47,49-53,76H,28-33H2,1-25H3,(H,64,78)(H,65,77)(H,66,79)(H,67,80)/b27-26+/t41-,42+,43-,44+,45+,46+,47+,49+,50+,51+,52+,53-/m1/s1
Chemical Name
(3S,6S,9S,12R,15S,18S,21S,24S,30S,33S)-33-[(E,1R,2R)-1-hydroxy-2-methylhex-4-enyl]-1,4,7,10,12,15,19,25,28-nonamethyl-6,9,18,24-tetrakis(2-methylpropyl)-3,21,30-tri(propan-2-yl)-1,4,7,10,13,16,19,22,25,28,31-undecazacyclotritriacontane-2,5,8,11,14,17,20,23,26,29,32-undecone
Synonyms
Cyclosporin DVal2-cyclosporine
HS Tariff Code
2934.99.9001
Storage

Powder      -20°C    3 years

                     4°C     2 years

In solvent   -80°C    6 months

                  -20°C    1 month

Note: Please store this product in a sealed and protected environment, avoid exposure to moisture.
Shipping Condition
Room temperature (This product is stable at ambient temperature for a few days during ordinary shipping and time spent in Customs)
Solubility Data
Solubility (In Vitro)
DMSO : ~25 mg/mL (~20.55 mM)
Solubility (In Vivo)
Solubility in Formulation 1: ≥ 2.5 mg/mL (2.05 mM) (saturation unknown) in 10% DMSO + 90% Corn Oil (add these co-solvents sequentially from left to right, and one by one), clear solution.
For example, if 1 mL of working solution is to be prepared, you can add 100 μL of 25.0 mg/mL clear DMSO stock solution to 900 μL of corn oil and mix evenly.

 (Please use freshly prepared in vivo formulations for optimal results.)
Preparing Stock Solutions 1 mg 5 mg 10 mg
1 mM 0.8219 mL 4.1097 mL 8.2194 mL
5 mM 0.1644 mL 0.8219 mL 1.6439 mL
10 mM 0.0822 mL 0.4110 mL 0.8219 mL

*Note: Please select an appropriate solvent for the preparation of stock solution based on your experiment needs. For most products, DMSO can be used for preparing stock solutions (e.g. 5 mM, 10 mM, or 20 mM concentration); some products with high aqueous solubility may be dissolved in water directly. Solubility information is available at the above Solubility Data section. Once the stock solution is prepared, aliquot it to routine usage volumes and store at -20°C or -80°C. Avoid repeated freeze and thaw cycles.

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Working concentration mg/mL;

Method for preparing DMSO stock solution mg drug pre-dissolved in μL DMSO (stock solution concentration mg/mL). Please contact us first if the concentration exceeds the DMSO solubility of the batch of drug.

Method for preparing in vivo formulation:Take μL DMSO stock solution, next add μL PEG300, mix and clarify, next addμL Tween 80, mix and clarify, next add μL ddH2O,mix and clarify.

(1) Please be sure that the solution is clear before the addition of next solvent. Dissolution methods like vortex, ultrasound or warming and heat may be used to aid dissolving.
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