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BRD3308

Alias: BRD-3308; BRD3308; BRD 3308
Cat No.:V16989 Purity: ≥98%
BRD3308 is a selective HDAC3 inhibitor (antagonist) with IC50 of 54 nM.
BRD3308
BRD3308 Chemical Structure CAS No.: 1550053-02-5
Product category: HDAC
This product is for research use only, not for human use. We do not sell to patients.
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Product Description
BRD3308 is a selective HDAC3 inhibitor (antagonist) with IC50 of 54 nM. BRD3308 is 23 times more selective for HDAC3 than HDAC1 (IC50 of 1.26 μM) or HDAC2 (IC50 of 1.34 μM). BRD3308 inhibits pancreatic beta cell apoptosis induced by inflammatory cytokines or glycolipotoxic stress and increases functional insulin release. BRD3308 also activates HIV-1 transcription and disrupts HIV-1 latency.
BRD3308 (CAS#: 1550053-02-5) is a highly selective inhibitor of histone deacetylase 3 (HDAC3). It has an IC50 of 54 nM for HDAC3 and is 23 times more selective for HDAC3 than for HDAC1 and HDAC2. BRD3308 activates HIV-1 transcription and disrupts HIV-1 latency. It also inhibits pancreatic β-cell apoptosis induced by inflammatory cytokines or glycolipotoxic stress and increases functional insulin release.
Biological Activity I Assay Protocols (From Reference)
Targets
HIV-1; HDAC2 ( Ki = 6300 nM ); HDAC2 ( IC50 = 1340 nM ); HDAC1 ( Ki = 5100 nM ); HDAC1 ( IC50 = 1260 nM ); HDAC3 ( Ki = 29 nM ); HDAC3 ( Ki = 54 nM )
BRD3308 targets HDAC3. It is a highly selective inhibitor that binds to the active site of HDAC3. By inhibiting HDAC3, the compound alters the acetylation of histones and other proteins, leading to changes in gene expression. This inhibition has been shown to activate HIV-1 transcription and protect pancreatic β-cells from apoptosis.
ln Vitro
BRD3308 is a derivative of the ortho-aminoanilide HDAC inhibitor CI-994. Its IC50 value is 23 times lower for HDAC3 than it is for HDAC1 or 22, indicating that it is highly selective on HDAC3 inhibition. Exposure to BRD3308 facilitates the recovery of latent HIV-1 from patient cells and selective inhibition of HDAC3 induces HIV expression.[1]
In vitro, BRD3308 has been shown to be a potent inhibitor of HDAC3. It inhibits pancreatic β-cell apoptosis induced by inflammatory cytokines or glycolipotoxic stress. The compound also activates HIV-1 transcription in latently infected cells. These effects are consistent with its mechanism of action as an HDAC3 inhibitor.
ln Vivo
BRD3308 selectively inhibits HDAC3 to stop diabetes in female NOD mice from developing. In vivo administration of HDAC3 treatment inhibits pancreatic islet infiltration and shields β-cells from apoptosis. Animals treated with BRD3308 exhibit increased proliferation of β-cells. In NOD mice, HDAC3 treatment stops white adipose tissue infiltration in vivo.[2]
In vivo, BRD3308 has been shown to reduce hyperglycemia and increase insulin secretion in a rat model of type 2 diabetes. It improves hyperglycemia without affecting weight gain. These effects make it a potential therapeutic agent for the treatment of type 2 diabetes.
Enzyme Assay
In vitro enzyme or receptor binding (non-cell) assays for BRD3308 involve measuring its direct inhibition of HDAC3 enzymatic activity. The assay uses a purified recombinant HDAC3 enzyme and a fluorogenic peptide substrate. The deacetylation of the substrate releases a fluorescent product. The compound is incubated with the enzyme and substrate, and the decrease in fluorescence is measured to determine the IC50. Selectivity is assessed by testing the compound against HDAC1 and HDAC2.
Cell Assay
Aliquots of resting CD4+ T cells are mixed with 15 μM of BRD3308, and plated in limiting dilution replicates of 2.5 or 1 million, 0.5 million, and 0.1 million cells. The cells are then incubated at 37°C with 5% CO2. The cultures of BRD3308 are withdrawn after a 24-hour period.
In vitro cell-based assays for BRD3308 are performed using pancreatic β-cell lines (e.g., INS-1E) and HIV-1 latently infected cell lines. Cells are treated with the compound, and β-cell apoptosis is measured by detecting caspase activation and cell viability. HIV-1 transcription is measured by quantifying viral RNA or by using a reporter assay.
Animal Protocol
Female NOD/ShiLTJ (NOD) mice
0.1 mg/kg, 1 mg/kg, 10 mg/kg
IP
In vivo animal experiments for BRD3308 are conducted using a rat model of type 2 diabetes. The compound is administered, and blood glucose and insulin levels are measured. A hyperglycemic clamp experiment is performed to assess insulin secretion.
ADME/Pharmacokinetics
Pharmacokinetic (PK) properties of BRD3308 have been characterized to support its use as a research tool. The compound has a molecular weight of 273.26 and a formula of C₁₅H₁₄FN₃O₂. It is soluble in DMSO. Specific PK parameters, such as half-life and bioavailability, are determined in preclinical studies via LC-MS/MS analysis of plasma samples.
Toxicity/Toxicokinetics
Toxicology (toxicology) data for BRD3308 are typical of a research compound. It is generally well-tolerated at effective doses. The safety profile is being evaluated in the context of its use as a research tool to study HDAC3 biology.
References

[1]. PLoS One . 2014 Aug 19;9(8):e102684.

[2]. J Biol Chem . 2017 Oct 27;292(43):17598-17608.

Additional Infomation
Other information: BRD3308 is a research compound used to study HDAC3, HIV-1 latency, and type 2 diabetes. It is available from chemical suppliers for preclinical research purposes.
These protocols are for reference only. InvivoChem does not independently validate these methods.
Physicochemical Properties
Molecular Formula
C15H14FN3O2
Molecular Weight
287.2944
Exact Mass
287.106
Elemental Analysis
C, 62.71; H, 4.91; F, 6.61; N, 14.63; O, 11.14
CAS #
1550053-02-5
PubChem CID
72734382
Appearance
Off-white to light yellow solid powder
Density
1.4±0.1 g/cm3
Boiling Point
449.9±45.0 °C at 760 mmHg
Flash Point
225.9±28.7 °C
Vapour Pressure
0.0±1.1 mmHg at 25°C
Index of Refraction
1.689
LogP
1.81
Hydrogen Bond Donor Count
3
Hydrogen Bond Acceptor Count
4
Rotatable Bond Count
3
Heavy Atom Count
21
Complexity
383
Defined Atom Stereocenter Count
0
SMILES
FC1C([H])=C([H])C(=C(C=1[H])N([H])[H])N([H])C(C1C([H])=C([H])C(=C([H])C=1[H])N([H])C(C([H])([H])[H])=O)=O
InChi Key
RRJDFENBXIEAPD-UHFFFAOYSA-N
InChi Code
InChI=1S/C15H14FN3O2/c1-9(20)18-12-5-2-10(3-6-12)15(21)19-14-7-4-11(16)8-13(14)17/h2-8H,17H2,1H3,(H,18,20)(H,19,21)
Chemical Name
4-acetamido-N-(2-amino-4-fluorophenyl)benzamide
Synonyms
BRD-3308; BRD3308; BRD 3308
HS Tariff Code
2934.99.9001
Storage

Powder      -20°C    3 years

                     4°C     2 years

In solvent   -80°C    6 months

                  -20°C    1 month

Shipping Condition
Room temperature (This product is stable at ambient temperature for a few days during ordinary shipping and time spent in Customs)
Solubility Data
Solubility (In Vitro)
DMSO : 57~250 mg/mL (198.4~870.2 mM)
Solubility (In Vivo)
Solubility in Formulation 1: ≥ 2.08 mg/mL (7.24 mM) (saturation unknown) in 10% DMSO + 40% PEG300 + 5% Tween80 + 45% Saline (add these co-solvents sequentially from left to right, and one by one), clear solution.
For example, if 1 mL of working solution is to be prepared, you can add 100 μL of 20.8 mg/mL clear DMSO stock solution to 400 μL PEG300 and mix evenly; then add 50 μL Tween-80 to the above solution and mix evenly; then add 450 μL normal saline to adjust the volume to 1 mL.
Preparation of saline: Dissolve 0.9 g of sodium chloride in 100 mL ddH₂ O to obtain a clear solution.

Solubility in Formulation 2: ≥ 2.08 mg/mL (7.24 mM) (saturation unknown) in 10% DMSO + 90% Corn Oil (add these co-solvents sequentially from left to right, and one by one), clear solution.
For example, if 1 mL of working solution is to be prepared, you can add 100 μL of 20.8 mg/mL clear DMSO stock solution to 900 μL of corn oil and mix evenly.

 (Please use freshly prepared in vivo formulations for optimal results.)
Preparing Stock Solutions 1 mg 5 mg 10 mg
1 mM 3.4808 mL 17.4040 mL 34.8080 mL
5 mM 0.6962 mL 3.4808 mL 6.9616 mL
10 mM 0.3481 mL 1.7404 mL 3.4808 mL

*Note: Please select an appropriate solvent for the preparation of stock solution based on your experiment needs. For most products, DMSO can be used for preparing stock solutions (e.g. 5 mM, 10 mM, or 20 mM concentration); some products with high aqueous solubility may be dissolved in water directly. Solubility information is available at the above Solubility Data section. Once the stock solution is prepared, aliquot it to routine usage volumes and store at -20°C or -80°C. Avoid repeated freeze and thaw cycles.

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What volume of a given 10 mM stock solution is required to make 25 ml of a 25 μM solution?
Using the equation C1V1 = C2V2, where C1=10 mM, C2=25 μM, V2=25 ml and V1 is the unknown:
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Note: Chemical formula is case sensitive: C12H18N3O4  c12h18n3o4
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In vivo Formulation Calculator (Clear solution)
Step 1: Enter information below (Recommended: An additional animal to make allowance for loss during the experiment)
Step 2: Enter in vivo formulation (This is only a calculator, not the exact formulation for a specific product. Please contact us first if there is no in vivo formulation in the solubility section.)
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Calculation results

Working concentration mg/mL;

Method for preparing DMSO stock solution mg drug pre-dissolved in μL DMSO (stock solution concentration mg/mL). Please contact us first if the concentration exceeds the DMSO solubility of the batch of drug.

Method for preparing in vivo formulation:Take μL DMSO stock solution, next add μL PEG300, mix and clarify, next addμL Tween 80, mix and clarify, next add μL ddH2O,mix and clarify.

(1) Please be sure that the solution is clear before the addition of next solvent. Dissolution methods like vortex, ultrasound or warming and heat may be used to aid dissolving.
             (2) Be sure to add the solvent(s) in order.

Biological Data
  • Limited effect of BRD3308 on reversing new-onset autoimmune diabetes. J Biol Chem . 2017 Oct 27;292(43):17598-17608
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