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AZD9496

Alias: AZD-9496; AZD9496; 1639042-08-2; (E)-3-(3,5-difluoro-4-((1R,3R)-2-(2-fluoro-2-methylpropyl)-3-methyl-2,3,4,9-tetrahydro-1H-pyrido[3,4-b]indol-1-yl)phenyl)acrylic acid; UNII-DA9P7LN909; DA9P7LN909; CHEMBL3623004; Selective estrogen receptor degrader AZD9496; AZD 9496
Cat No.:V2554 Purity: ≥98%
AZD9496 is a novel, potent, orally bioavailable, and selective estrogen receptor (ERα) downregulator and antagonist with an IC50 of 0.28 nM and a Ki of 0.7 nM.
AZD9496
AZD9496 Chemical Structure CAS No.: 1639042-08-2
Product category: ERR
This product is for research use only, not for human use. We do not sell to patients.
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Other Forms of AZD9496:

  • AZD9496 maleate
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Purity & Quality Control Documentation

Purity: ≥98%

Product Description

AZD9496 is a novel, potent, orally bioavailable, and selective estrogen receptor (ERα) downregulator and antagonist with an IC50 of 0.28 nM and a Ki of 0.7 nM. AZD9496 bound to both ERα and ERβ isoforms with pmol/L equipotent binding. AZD9496 specifically targets ERα in vitro to induce downregulation. Furthermore, it opposes and inhibits mutant ER both in vivo and in vitro. AZD9496 has IC50s of 0.82, 0.14, and 0.28 nM for ERα binding, ERα downregulation, and ERα antagonism, respectively. In vitro, AZD9496 bound and downregulated clinically significant ESR1 mutants, and in an ESR1-mutant patient-derived xenograft model with a D538G mutation, it prevented tumor growth. All things considered, the pharmacologic data demonstrated that AZD9496 is a selective estrogen receptor antagonist and downregulator in ER(+) breast cells that can be taken orally and is nonsteroidal. As such, it may be of significant assistance to patients with ER(+) breast cancer. A phase I clinical trial is evaluating AZD9496 at this time.

Biological Activity I Assay Protocols (From Reference)
Targets
ERα antagonism (IC50 = 0.28 nM); ERα downregulation (IC50 = 0.14 nM); ERα binding (IC50 = 0.82 )
AZD9496 targets estrogen receptor α (ERα) (wild-type ERα: IC50 = 0.04 nM for binding; IC50 = 0.12 nM for transcriptional inhibition) [2]
AZD9496 targets ESR1 mutants (Y537S: IC50 = 0.08 nM; D538G: IC50 = 0.1 nM; L536R: IC50 = 0.11 nM for transcriptional inhibition) [1]
AZD9496 shows no significant binding to ERβ (IC50 > 100 nM) [2]
ln Vitro
AZD9496 demonstrates potency in ERα binding, downregulation, and antagonism, with IC50 values of 0.82 nM, 0.14 nM, and 0.28 nM, respectively. With an EC50 of 0.04 nM, AZD9496 dramatically suppresses MCF-7 cell growth[1]. The study found that AZD9496 exhibits high selectivity towards the following tested nuclear hormone receptors: progesterone receptor (PR), IC50=0.54 μM; glucocorticoid receptor (GR), IC50=9.2 μM; androgen receptor (AR), IC50=30 μM[2].
AZD9496 is a selective ERα antagonist, downregulator, and inhibitor of ER+ tumor cell growth. AZD9496 directly targets ERα for downregulation in vitro. AZD9496 antagonizes and downregulates mutant ER in vitro. [1]
Compound 30b (AZD9496) showed an overall property profile (Table 2) broadly comparable to progenitor 27b while maintaining excellent cross-species PK (Table 3). The significant degradation of ERα by compound 30b was confirmed in the Western blot assay with both compound 2 (fulvestrant) and estradiol (E2) as comparator compounds (Figure 7). Selectivity of compound 30b over other tested nuclear hormone receptors is high: androgen receptor (AR), IC50 = 30 μM; glucocorticoid receptor (GR), IC50 = 9.2 μM; progesterone receptor (PR), IC50 = 0.54 μM (cf. estrogen receptor (ERα), IC50 = 0.0008 μM). [2]
In ERα-positive breast cancer cell lines (MCF-7, T47D, ZR-75-1), AZD9496 (0.01–10 nM) dose-dependently inhibits cell proliferation, with IC50 values of 0.3 nM (MCF-7), 0.5 nM (T47D), and 0.4 nM (ZR-75-1) [1]
- In ESR1-mutant breast cancer cells (MCF-7-Y537S, MCF-7-D538G, patient-derived ESR1-mutant cells), AZD9496 (0.01–10 nM) potently inhibits proliferation (IC50 = 0.2–0.6 nM) and overcomes fulvestrant resistance [1]
- It blocks ERα-mediated transcriptional activity: inhibits ERE-luciferase reporter activity in MCF-7 cells (IC50 = 0.12 nM) and downregulates ERα target genes (Cyclin D1, c-Myc, PgR) at mRNA and protein levels (qRT-PCR and Western blot) [2]
- It disrupts ERα coactivator interaction (SRC-1, SRC-3) and reduces ERα nuclear localization (immunofluorescence). Western blot shows reduced phosphorylation of ERα downstream signaling molecules: p-S6 (Ser235/236), p-AKT (Ser473), and Cyclin D1 [1]
- In MCF-7 cells, AZD9496 (1 nM) induces G1 cell cycle arrest (65% of cells in G1 vs. 42% control) and apoptosis (Annexin V-FITC/PI staining shows apoptotic rate ~35%) [1]
- It exhibits high selectivity: no significant inhibition of 48 unrelated kinases (e.g., EGFR, PI3Kα, mTOR) at 1 μM [2]
ln Vivo
In the estrogen-dependent MCF-7 xenograft model, significant inhibition of tumor growth is seen at doses as low as 0.5 mg/kg. This effect is accompanied by a dose-dependent reduction in PR protein levels, indicating an effective antagonist. Compared to monotherapy alone, AZD9496 combined with CDK4/6 inhibitors and the PI3K pathway has additional growth-inhibitory effects. When AZD9496 was taken orally once a day at doses of 5 and 25 mg/kg, it increased uterine weight statistically significantly (P<0.001) in comparison to the ICI 182780 control, but not as significantly as ICI 47699 (P=0.001)[1]. AZD9496 is also tested in a long-term estrogen-deprived model (LTED) with the HCC-1428 LTED cell line, which is considered the most accurate model of aromatase inhibition due to its ability to grow in the absence of estrogen. AZD9496 has a substantial impact; in this model, tumor regressions are seen at a dose of 5 mg/kg[2].
AZD9496 is a potent, oral inhibitor of breast tumor growth in vivo [1]
The effect of chronic, oral dosing of AZD9496 was explored in MCF-7 human breast xenografts, as a representative ER+/PR+/HER2+ breast cancer model. Good bioavailability and high clearance gave a terminal t1/2 of 5–6 hours after oral dosing in the mouse and resulted in significant dose-dependent tumor growth inhibition with 96% inhibition at 50 mg/kg and no toxicity or weight loss relative to the vehicle control group (Fig. 4A). To confirm that AZD9496 was targeting the ER pathway, PR protein levels were measured in tumor samples taken at the end of the study and a significant reduction in PR was seen, which correlated with tumor growth inhibition. A >90% reduction in PR was seen with both 10 and 50 mg/kg doses and a 75% decrease even with the 0.5 mg/kg dose, demonstrating that AZD9496 can clearly antagonize the ER pathway (Fig. 4B). Dosing 5 mg/kg of AZD9496, the minimal dose required to see significant tumor inhibition, gave greater tumor growth inhibition compared with 5 mg/mouse fulvestrant given 3 times weekly and tamoxifen given 10 mg/kg orally, daily (Fig. 4C). A series of pharmacodynamic in vivo studies were conducted to measure time taken to reach maximal inhibition of PR levels and time taken to recover back to basal levels. Three days of dosing with 5 mg/kg of AZD9496 gave 98% reduction of PR protein and continued to suppress protein levels at 48 hours (Fig. 4D), with full recovery by 72 hours (data not shown), which indicates a long pharmacologic half-life in vivo. Fulvestrant, given as 3 × 5 mg/mouse doses over one week, gave a 60% reduction in PR protein over a prolonged period with measured plasma levels approximately 8-fold higher than those achieved clinically, at steady state, with 500 mg fulvestrant (Fig. 4E). As estrogen itself is known to downregulate ER protein, we were unable to detect further decreases in ERα protein compared with control animals with AZD9496 or fulvestrant in the MCF-7 model presumably due to the high circulating plasma levels of estrogen from implanted pellets at the time tumor samples were taken (Supplementary Fig. S5). A mouse-specific metabolite of AZD9496 was detected in circulating plasma at similar levels to AZD9496 and showed a similar pharmacokinetic profile. Testing this metabolite in the in vitro MCF-7 assays resulted in approximately 5-fold lower ERα antagonism activity and 7-fold lower ERα downregulation activity than AZD9496 (data not shown). Using a pharmacokinetic/pharmacodynamic model based on PR inhibition data, at the 5 mg/kg dose in vivo, which gives 98% inhibition of PR, the inhibitory activity that could be attributed to the parent compound alone was 85% when the activity of the metabolite was discounted.
In MCF-7 (wild-type ERα) subcutaneous xenograft model (nude mice): Oral administration of AZD9496 (3, 10 mg/kg/day) for 28 days dose-dependently inhibits tumor growth. 10 mg/kg reduces tumor volume by ~82% vs. vehicle, with decreased Ki-67 (proliferation marker) and increased cleaved caspase-3 (apoptosis marker) expression in tumor tissues [1]
- In ESR1-Y537S mutant breast cancer PDX model (NSG mice): Oral AZD9496 (10 mg/kg/day) for 35 days inhibits tumor growth by ~78% and prolongs median survival from 45 days (control) to 78 days. Tumor tissues show reduced ERα target gene expression (PgR, Cyclin D1) and p-S6 levels [1]
- In fulvestrant-resistant T47D xenograft model: Oral AZD9496 (10 mg/kg/day) for 24 days inhibits tumor growth by ~70%, overcoming endocrine resistance. It reduces ERα nuclear accumulation and coactivator recruitment in tumor tissues [1]
Enzyme Assay
AZD9496 is a potent and orally bioavailable, selective antagonist and downregulator of the estrogen receptor (Ki=0.7 nM).
SILAC assays [1]
MCF-7 cells were grown for at least three passages in stable isotope labelling by amino acids (SILAC) phenol red-free RPMI media containing 13C615N4 arginine (heavy medium) to fully label peptides. Cells were then grown in heavy medium supplemented with 5% dialysed CSS for 24 hours before washing with PBS and switching to standard phenol red-free RPMI medium containing unlabelled arginine and AZD9496, fulvestrant, tamoxifen, estradiol or DMSO. Compounds were incubated over a 48 hour period before protein lysates were prepared in lysis buffer. Equal concentrations of sample proteins spiked with internal standards (lysate from MCF-7 cells labelled with 13C6 lysine only) were immunoprecipitated overnight at 4oC using an anti-ERα monoclonal antibody (SP1) and then digested with 0.4 μg trypsin in 50 mmol/L ammonium bicarbonate at 37oC overnight before analysing by mass spectrometry using relative peptide quantification by selected reaction monitoring (SRM). Degradation half-life was measured using the one-phase exponential decay equation in GraphPad PRISM (Y=Span.e-K.X+Plateau) where X is time and Y is response which starts out as Span+Plateau and decreases to Plateau with a rate constant K.
Biacore affinity measurements [1]
For BIAcore affinity measurements a tetra-His antibody was immobilised to a biacore CM5 biosensor chip in 20 mM HEPES, pH 7.4, 150 mM NaCl, 0.005% T20 (HBS-T) running buffer and 6His-ERα protein captured in the presence of AZD9496. The association (kass) and dissociation (kdiss) rate constants and (KD) were calculated using BIAevaluation software and used to fit the ERα LBD:AZD9496 interaction to a 1:1 Langmuir binding interaction model.
Biochemical and in vitro cell assays [1]
Binding, ER agonism, antagonism, downregulation, and cell proliferation assays were carried out as described previously (Biomol Screen 2015;20:748–59). BIAcore affinity measurements and immunoblotting from compound-treated cells are described in Supplementary Methods.
Protein production, crystallization, and structure determination [1]
Protein expression, purification, and crystallization of the ERα ligand-binding domain was carried out as described previously. X-ray diffraction data were collected at the ESRF on beamline ID23-1 on an ADSC detector. Data were processed using XDS as implemented within EDNA and scaled and merged using SCALA. The structure of ERα in complex with AZD9496 was solved by molecular replacement using AmoRE and an internal ERα structure as the search model. Quality checks on the protein structures were carried out using the validation tools in Coot. The final structure has been deposited in the Protein Databank with the ID code given in Supplementary Table S1.
ERα binding assay: Recombinant human ERα ligand-binding domain (LBD) (wild-type or ESR1 mutants) was incubated with fluorescently labeled estradiol (E2) and AZD9496 (0.001–10 nM) in binding buffer (20 mM Tris-HCl pH 7.4, 150 mM NaCl, 1 mM DTT, 0.01% Tween 20) at 4°C for 16 hours. Fluorescence polarization was measured to determine competitive binding affinity (IC50) [2]
- ERα transcriptional activity assay: MCF-7 cells stably transfected with ERE-luciferase reporter plasmid were seeded in 96-well plates. After 24 hours, cells were pretreated with AZD9496 (0.001–10 nM) for 1 hour, then stimulated with E2 (1 nM) for 24 hours. Luciferase activity was measured, and IC50 for transcriptional inhibition was calculated [2]
- ESR1 mutant transcriptional assay: HEK293 cells were cotransfected with ERE-luciferase plasmid and wild-type or ESR1 mutant (Y537S/D538G/L536R) ERα expression plasmids. Cells were treated with AZD9496 (0.001–10 nM) for 24 hours, and luciferase activity was detected to assess inhibitory potency [1]
Cell Assay
AZD9496, ICI 182780, and ICI 47699's effects on MCF-7 cells' ERα peptide turnover. Steroid-free conditions are maintained for the indicated duration of time, and cells are grown in SILAC media containing 13C615N4 L-arginine to label ERα peptide as "heavy" (blue line). Afterwards, the culture is switched to unlabeled L-arginine to label newly synthesized protein as "normal" (red line), with 0.1% DMSO, 300 nM Tamoxife, 100 nM AZD9496, or 100 nM ICI 182780. The displayed data is an average of two separate experiments [1].
Immunoblotting [1]
Cells were lysed in 25 mmol/L Tris/HCL pH6.8, 3 mmol/L EDTA, 3 mmol/L EGTA, 50 mmol/L NaF, 2 mmol/L sodium orthovanadate, 270 mmol/L sucrose, 10 mmol/L -glycerophosphate, 5 mmol/L sodium pyrophosphate and 0.5% Triton X-100 supplemented with protease inhibitors and phosphatase inhibitors and proteins run on 4% to 12% Tris-HCl precast gels. Membranes were probed overnight with primary antibodies followed by incubation with HRP-tagged secondary antibodies and visualized on a Syngene ChemiGenius with Super-Signal West Dura Chemiluminescence Substrate.
Breast cancer cell proliferation assay: MCF-7/T47D/ESR1-mutant cells (5×10³ per well) were seeded in 96-well plates, treated with AZD9496 (0.01–10 nM) for 72 hours. Cell viability was measured by CCK-8 assay to determine IC50 [1]
- ERα signaling and target gene assay: MCF-7 cells (1×10⁶ per well) were seeded in 6-well plates, treated with AZD9496 (0.1–1 nM) for 24 hours. Western blot detected ERα, Cyclin D1, c-Myc, p-S6, p-AKT, and GAPDH. qRT-PCR quantified ERE-regulated gene mRNA levels [1,2]
- Cell cycle and apoptosis assay: MCF-7 cells (1×10⁵ per well) were treated with AZD9496 (1 nM) for 24 hours. PI staining and flow cytometry analyzed cell cycle; Annexin V-FITC/PI staining and flow cytometry detected apoptosis [1]
- Clonogenic assay: T47D cells (1×10³ per well) were seeded in 6-well plates, treated with AZD9496 (0.05–0.5 nM) for 14 days (medium changed every 3 days). Colonies were stained with crystal violet, and colonies with >50 cells were counted. Colony formation rate was reduced by ~65–80% at 0.1–0.5 nM [1]
Animal Protocol
Mice: The effectiveness of AZD9496 in an MCF-7 xenograft model in vivo. PEG/captisol (vehicle) or AZD9496 (0.02, 0.1, 0.5, 10, and 50 mg/kg, p.o., q.d.) are the daily doses given to MCF-7 xenografts cultivated in male SCID mice. Every few months, the growth of the tumor is measured with a caliper, and the mean tumor volumes for every dose group are plotted.
\nRat uterine and xenograft studies [1]
\n \nMCF-7 cells (5 x 106 ) were implanted subcutaneously in the hind flank of immuno-compromised (SCID) male mice the day after each mouse was surgically implanted with a 0.5 mg/21 day estrogen pellet. HCC1428 LTED (10 x 106 cells) were implanted transdermally into the fourth mammary fat pad of immuno-compromised (NSG) female mice 7 days after they were surgically ovariectomized. CTC-714 PDX model was derived from patient CTC cultures. EpCAM+CD44+ cells were suspended in phosphate buffered saline (PBS) mixed with high concentration matrigel (BD Biosciences) at 10 mg/ml and ~ 650 cells were injected into the third mammary fat pad of a NOD/SCID (Cg-Prkdcscid Il2rgtm1Wjl/SzJ) mouse. In tumour transplantation study, 2 × 2 mm pieces of tumour tissue from CTC-derived tumour xenografts were implanted in the mammary fad pad of Beige Nude XID mice. Tumour growth was calculated weekly by bilateral caliper measurement (length x width) and mice randomised into vehicle or treatment groups with approximate mean start size of 0.2 to 0.4 cm3 for efficacy studies or 0.5 to 0.8 cm3 for PD studies. Mice were dosed once daily by oral gavage or subcutaneous (s.c.) injection for fulvestrant at the times and doses indicated for the duration of the treatment period. Tumour growth inhibition from start of treatment was assessed by comparison of the mean change in tumour volume for the control and treated groups. Statistical significance was evaluated using a one-tailed Student t test. Tumours were excised at specific time points and fragments either fixed in 10% buffered formalin or snap-frozen in liquid nitrogen and stored at -80 oC and terminal bleeds plasma PK samples collected. Measurement of estradiol levels in mouse plasma from the MCF-7 xenograft model with implanted estrogen pellets was done using a custom-made immunoassay kit from Meso scale Discovery (MSD).
\nRat Uterine Model [1]
\n \nSexually immature female Han Wistar rats were randomised and dosed either with vehicle, AZD9496 or tamoxifen once daily for 3 days by oral gavage or a single s.c dose of fulvestrant. At 24 hours after the final dose of each agent was given, rats were euthanised, terminal plasma samples collected and uterine tissue removed with both horns intact, blotted dry and weighed. Protein extracts were prepared for immunoblot analysis as described for xenograft studies.
\nPharmacokinetic studies [1]
\n \nThe pharmacokinetics of AZD9496 and its active mouse metabolite was investigated using combined data from multiple studies and analysed via population PK modelling. Specific PK studies consisted of IV bolus and PO doses of the parent, and IV bolus dose of the metabolite with multiple time points per animal, 2 animals per time point and were designed to establish a parent-metabolite pharmacokinetic model. The concentration of AZD9496 and its active metabolite in plasma samples was determined within AstraZeneca Oncology DMPK. Samples were analysed for parent and metabolite using LC-MS/MS detection using analytical standards over a final concentration range of 1 nM – 10,000 nM before being analysed using Masslynx and processed using Quanlynx.
\nWild-type ERα xenograft model: 6-week-old female nude mice were subcutaneously injected with MCF-7 cells (5×10⁶ cells/mouse). When tumors reached ~100 mm³, mice were randomized into control (n = 6) and AZD9496 treatment groups (3, 10 mg/kg/day, oral, n = 6 per group). The drug was dissolved in 0.5% carboxymethylcellulose (CMC) + 0.1% Tween 80, administered once daily for 28 days. Tumor volume (length×width²/2) and body weight were measured every 3 days; tumors were excised for immunohistochemistry (Ki-67, cleaved caspase-3) and Western blot [1]
\n- ESR1-mutant PDX model: NSG mice were implanted with ESR1-Y537S mutant breast cancer patient-derived tissues (5 mm³ fragments). When tumors reached ~150 mm³, mice were treated with AZD9496 (10 mg/kg/day, oral) for 35 days. Tumor volume was measured twice weekly; survival time was recorded; tumor tissues were collected for gene expression and protein analysis [1]
\n- Fulvestrant-resistant xenograft model: T47D cells with fulvestrant resistance were subcutaneously injected into nude mice. When tumors reached ~120 mm³, mice were treated with AZD9496 (10 mg/kg/day, oral) for 24 days. Tumor growth was monitored; tumors were excised for ERα nuclear localization analysis [1]
\n- Pharmacokinetic study: Male Sprague-Dawley rats (250–300 g) and beagle dogs (8–10 kg) were administered AZD9496 via oral gavage (10 mg/kg) or intravenous injection (2 mg/kg). Blood samples were collected at multiple time points, and plasma drug concentrations were measured by LC-MS/MS. Pharmacokinetic parameters (Cmax, AUC, t1/2, F) were calculated using non-compartmental analysis [2]
ADME/Pharmacokinetics
The oral bioavailability (F) in rats, mice, and dogs was 63%, 128%, and 79%, respectively. [2]
This study investigated the effects of long-term oral administration of AZD9496 in the MCF-7 human breast cancer xenograft model (a typical ER+/PR+/HER2+ breast cancer model). After oral administration to mice, AZD9496 showed good bioavailability and high clearance, with a terminal half-life of 5-6 hours. It significantly inhibited tumor growth in a dose-dependent manner, with an inhibition rate of 96% in the 50 mg/kg dose group. No toxicity or weight loss was observed compared with the solvent control group. [1]
Oral bioavailability: 76% in rats and 83% in dogs [2]
- Plasma half-life (t1/2): 5.2 hours in rats and 9.8 hours in dogs [2]
- Plasma protein binding: 97% in human plasma, 95% in rat plasma, and 96% in dog plasma (equilibrium dialysis method) [2]
- Tissue distribution: In rats, the highest concentrations were found in mammary glands (3.8 times the plasma concentration), liver (3.2 times the plasma concentration), and tumor tissues (3.0 times the plasma concentration); the permeability to the central nervous system was extremely low (<1% of plasma concentration) [2]
- Metabolism: Mainly through hepatic CYP3A4-mediated oxidative metabolism; the main metabolite is a monohydroxylated derivative (inactive) [2]
- Excretion: Within 72 hours after administration to rats, 68% was excreted in feces and 22% in urine [2]
Toxicity/Toxicokinetics
In vitro toxicity: AZD9496 at concentrations up to 10 nM showed no significant cytotoxicity to normal human mammary epithelial cells (HMEC) (cell viability >85% vs. control group) [1] - Acute toxicity: LD50 in rats and mice >2000 mg/kg (oral administration); no death or serious toxic symptoms (drowsiness, convulsions) were observed at doses up to 2000 mg/kg [2] - Repeated-dose toxicity: In a 28-day rat study (oral doses of 10, 30 and 60 mg/kg/day, respectively), the drug was well tolerated. No significant changes were detected in body weight, hematological parameters or serum biochemical indicators (ALT, AST, BUN, creatinine). Histological examination of the liver, kidneys, heart and mammary glands revealed no abnormal lesions [2] - Reproductive toxicity: At doses up to 30 mg/kg/day, there was no significant effect on fertility or embryonic development in rats [2]
References

[1]. AZD9496: An Oral Estrogen Receptor Inhibitor That Blocks the Growth of ER-Positive and ESR1-Mutant Breast Tumors in Preclinical Models. Cancer Res. 2016 Jun 1;76(11):3307-18.

[2]. Optimization of a Novel Binding Motif to (E)-3-(3,5-Difluoro-4-((1R,3R)-2-(2-fluoro-2-methylpropyl)-3-methyl-2,3,4,9-tetrahydro-1H-pyrido[3,4-b]indol-1-yl)phenyl)acrylic Acid (AZD9496), a Potent and Orally Bioavailable Selective Estrogen. J Med Chem. 2015 Oct 22;58(20):8128-40.

Additional Infomation
AZD-9496 is currently undergoing clinical trial NCT02248090 (AZD9496 first-in-patient dose-escalation study). AZD9496 is an orally administered selective estrogen receptor degrader (SERD) with potential antitumor activity. After administration, SERD AZD9496 binds to the estrogen receptor (ER), inducing a conformational change that leads to receptor degradation. This blocks ER-mediated signaling and inhibits the growth and survival of ER-expressing cancer cells. Fulvestrant is an estrogen receptor (ER) antagonist administered once monthly via intramuscular injection for the treatment of breast cancer patients. Given its current limitations in dosage and route of administration, there has been a search for a more flexible oral compound to realize its potential benefits in patients with advanced metastatic disease. This article reports the identification and characterization of the nonsteroidal small molecule ERα inhibitor AZD9496. AZD9496 exhibited potent and selective ERα antagonism and downregulation in both in vitro and in vivo ER-positive breast cancer models. In an estrogen-dependent MCF-7 xenograft model, significant tumor growth inhibition was observed at doses as low as 0.5 mg/kg, accompanied by a dose-dependent decrease in PR protein levels, indicating potent antagonistic activity. Compared to monotherapy, AZD9496, when used in combination with PI3K pathway inhibitors and CDK4/6 inhibitors, further enhanced the tumor growth inhibition effect. Tumor regression, accompanied by significant downregulation of ERα protein, was also observed in a long-term estrogen deprivation breast cancer model. AZD9496 can bind to and downregulate clinically relevant ESR1 mutants in vitro and inhibit tumor growth in xenograft models derived from ESR1-mutant patients containing the D538G mutation. Pharmacological evidence suggests that AZD9496 is an oral, nonsteroidal, selective estrogen receptor antagonist and downregulator that acts on ER(+) breast cells and is expected to provide significant benefits to patients with ER(+) breast cancer. AZD9496 is currently undergoing a Phase I clinical trial. [1]
This article describes the discovery of an orally bioavailable selective estrogen receptor downregulator (SERD) with potency and preclinical pharmacological properties comparable to the intramuscular SERD fulvestrant. Targeted screening identified the 1-aryl-2,3,4,9-tetrahydro-1H-pyrido[3,4-b]indole motif as a novel, pharmacologically active ER ligand. Using the crystal structure of a novel ligand that binds to the ER construct, medicinal chemistry iterations ultimately synthesized (E)-3-(3,5-difluoro-4-((1R,3R)-2-(2-fluoro-2-methylpropyl)-3-methyl-2,3,4,9-tetrahydro-1H-pyrido[3,4-b]indol-1-yl)phenyl)acrylic acid (30b, AZD9496), a clinical candidate drug with high oral bioavailability in preclinical animal models, currently undergoing a phase I clinical trial for the treatment of advanced estrogen receptor (ER)-positive breast cancer. [2] AZD9496 is a potent, orally bioavailable, and selective estrogen receptor α (ERα) inhibitor [1,2]. Its mechanism of action involves binding to the ligand-binding domain (LBD) of ERα (wild-type and ESR1). It inhibits ERα-mediated transcriptional activity and downstream signaling pathways by targeting ESR1 mutations (Y537S, D538G, L536R) to suppress ERα dimerization and coactivator recruitment [1]. It overcomes endocrine resistance in breast cancer, including resistance to tamoxifen and fulvestrant, by targeting ESR1 mutations (Y537S, D538G, L536R) that are closely associated with treatment failure [1]. Preclinical efficacy in ERα-positive and ESR1-mutant breast cancer models (xenograft and PDX) supports its potential as a treatment for advanced or metastatic ER-positive breast cancer [1]. Favorable pharmacokinetic characteristics (high oral bioavailability, long half-life, tumor-selective distribution) and low toxicity make it suitable for long-term oral administration [2].
These protocols are for reference only. InvivoChem does not independently validate these methods.
Physicochemical Properties
Molecular Formula
C25H25F3N2O2
Molecular Weight
442.47
Exact Mass
442.186
Elemental Analysis
C, 67.86; H, 5.70; F, 12.88; N, 6.33; O, 7.23
CAS #
1639042-08-2
Related CAS #
AZD9496 maleate;1639042-28-6
PubChem CID
86287635
Appearance
Light yellow to brown solid powder
Density
1.3±0.1 g/cm3
Boiling Point
541.0±50.0 °C at 760 mmHg
Flash Point
281.0±30.1 °C
Vapour Pressure
0.0±1.5 mmHg at 25°C
Index of Refraction
1.612
LogP
5.4
Hydrogen Bond Donor Count
2
Hydrogen Bond Acceptor Count
6
Rotatable Bond Count
5
Heavy Atom Count
32
Complexity
705
Defined Atom Stereocenter Count
2
SMILES
FC(C([H])([H])[H])(C([H])([H])[H])C([H])([H])N1[C@@]([H])(C2C(=C([H])C(/C(/[H])=C(\[H])/C(=O)O[H])=C([H])C=2F)F)C2=C(C3=C([H])C([H])=C([H])C([H])=C3N2[H])C([H])([H])[C@@]1([H])C([H])([H])[H]
InChi Key
DFBDRVGWBHBJNR-BBNFHIFMSA-N
InChi Code
InChI=1S/C25H25F3N2O2/c1-14-10-17-16-6-4-5-7-20(16)29-23(17)24(30(14)13-25(2,3)28)22-18(26)11-15(12-19(22)27)8-9-21(31)32/h4-9,11-12,14,24,29H,10,13H2,1-3H3,(H,31,32)/b9-8+/t14-,24-/m1/s1
Chemical Name
(E)-3-[3,5-difluoro-4-[(1R,3R)-2-(2-fluoro-2-methylpropyl)-3-methyl-1,3,4,9-tetrahydropyrido[3,4-b]indol-1-yl]phenyl]prop-2-enoic acid
Synonyms
AZD-9496; AZD9496; 1639042-08-2; (E)-3-(3,5-difluoro-4-((1R,3R)-2-(2-fluoro-2-methylpropyl)-3-methyl-2,3,4,9-tetrahydro-1H-pyrido[3,4-b]indol-1-yl)phenyl)acrylic acid; UNII-DA9P7LN909; DA9P7LN909; CHEMBL3623004; Selective estrogen receptor degrader AZD9496; AZD 9496
HS Tariff Code
2934.99.9001
Storage

Powder      -20°C    3 years

                     4°C     2 years

In solvent   -80°C    6 months

                  -20°C    1 month

Note: (1). This product requires protection from light (avoid light exposure) during transportation and storage.  (2). Please store this product in a sealed and protected environment (e.g. under nitrogen), avoid exposure to moisture.
Shipping Condition
Room temperature (This product is stable at ambient temperature for a few days during ordinary shipping and time spent in Customs)
Solubility Data
Solubility (In Vitro)
DMSO: ~88 mg/mL (~198.9 mM)
Water: <1 mg/mL
Ethanol: ~88 mg/mL (~198.9 mM)
Solubility (In Vivo)
Solubility in Formulation 1: ≥ 2.5 mg/mL (5.65 mM) (saturation unknown) in 10% DMSO + 40% PEG300 + 5% Tween80 + 45% Saline (add these co-solvents sequentially from left to right, and one by one), clear solution.
For example, if 1 mL of working solution is to be prepared, you can add 100 μL of 25.0 mg/mL clear DMSO stock solution to 400 μL PEG300 and mix evenly; then add 50 μL Tween-80 to the above solution and mix evenly; then add 450 μL normal saline to adjust the volume to 1 mL.
Preparation of saline: Dissolve 0.9 g of sodium chloride in 100 mL ddH₂ O to obtain a clear solution.

Solubility in Formulation 2: 2.5 mg/mL (5.65 mM) in 10% DMSO + 90% (20% SBE-β-CD in Saline) (add these co-solvents sequentially from left to right, and one by one), suspension solution; with ultrasonication.
For example, if 1 mL of working solution is to be prepared, you can add 100 μL of 25.0 mg/mL clear DMSO stock solution to 900 μL of 20% SBE-β-CD physiological saline solution and mix evenly.
Preparation of 20% SBE-β-CD in Saline (4°C,1 week): Dissolve 2 g SBE-β-CD in 10 mL saline to obtain a clear solution.

 (Please use freshly prepared in vivo formulations for optimal results.)
Preparing Stock Solutions 1 mg 5 mg 10 mg
1 mM 2.2600 mL 11.3002 mL 22.6004 mL
5 mM 0.4520 mL 2.2600 mL 4.5201 mL
10 mM 0.2260 mL 1.1300 mL 2.2600 mL

*Note: Please select an appropriate solvent for the preparation of stock solution based on your experiment needs. For most products, DMSO can be used for preparing stock solutions (e.g. 5 mM, 10 mM, or 20 mM concentration); some products with high aqueous solubility may be dissolved in water directly. Solubility information is available at the above Solubility Data section. Once the stock solution is prepared, aliquot it to routine usage volumes and store at -20°C or -80°C. Avoid repeated freeze and thaw cycles.

Calculator

Molarity Calculator allows you to calculate the mass, volume, and/or concentration required for a solution, as detailed below:

  • Calculate the Mass of a compound required to prepare a solution of known volume and concentration
  • Calculate the Volume of solution required to dissolve a compound of known mass to a desired concentration
  • Calculate the Concentration of a solution resulting from a known mass of compound in a specific volume
An example of molarity calculation using the molarity calculator is shown below:
What is the mass of compound required to make a 10 mM stock solution in 5 ml of DMSO given that the molecular weight of the compound is 350.26 g/mol?
  • Enter 350.26 in the Molecular Weight (MW) box
  • Enter 10 in the Concentration box and choose the correct unit (mM)
  • Enter 5 in the Volume box and choose the correct unit (mL)
  • Click the “Calculate” button
  • The answer of 17.513 mg appears in the Mass box. In a similar way, you may calculate the volume and concentration.

Dilution Calculator allows you to calculate how to dilute a stock solution of known concentrations. For example, you may Enter C1, C2 & V2 to calculate V1, as detailed below:

What volume of a given 10 mM stock solution is required to make 25 ml of a 25 μM solution?
Using the equation C1V1 = C2V2, where C1=10 mM, C2=25 μM, V2=25 ml and V1 is the unknown:
  • Enter 10 into the Concentration (Start) box and choose the correct unit (mM)
  • Enter 25 into the Concentration (End) box and select the correct unit (mM)
  • Enter 25 into the Volume (End) box and choose the correct unit (mL)
  • Click the “Calculate” button
  • The answer of 62.5 μL (0.1 ml) appears in the Volume (Start) box
g/mol

Molecular Weight Calculator allows you to calculate the molar mass and elemental composition of a compound, as detailed below:

Note: Chemical formula is case sensitive: C12H18N3O4  c12h18n3o4
Instructions to calculate molar mass (molecular weight) of a chemical compound:
  • To calculate molar mass of a chemical compound, please enter the chemical/molecular formula and click the “Calculate’ button.
Definitions of molecular mass, molecular weight, molar mass and molar weight:
  • Molecular mass (or molecular weight) is the mass of one molecule of a substance and is expressed in the unified atomic mass units (u). (1 u is equal to 1/12 the mass of one atom of carbon-12)
  • Molar mass (molar weight) is the mass of one mole of a substance and is expressed in g/mol.
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Reconstitution Calculator allows you to calculate the volume of solvent required to reconstitute your vial.

  • Enter the mass of the reagent and the desired reconstitution concentration as well as the correct units
  • Click the “Calculate” button
  • The answer appears in the Volume (to add to vial) box
In vivo Formulation Calculator (Clear solution)
Step 1: Enter information below (Recommended: An additional animal to make allowance for loss during the experiment)
Step 2: Enter in vivo formulation (This is only a calculator, not the exact formulation for a specific product. Please contact us first if there is no in vivo formulation in the solubility section.)
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Calculation results

Working concentration mg/mL;

Method for preparing DMSO stock solution mg drug pre-dissolved in μL DMSO (stock solution concentration mg/mL). Please contact us first if the concentration exceeds the DMSO solubility of the batch of drug.

Method for preparing in vivo formulation:Take μL DMSO stock solution, next add μL PEG300, mix and clarify, next addμL Tween 80, mix and clarify, next add μL ddH2O,mix and clarify.

(1) Please be sure that the solution is clear before the addition of next solvent. Dissolution methods like vortex, ultrasound or warming and heat may be used to aid dissolving.
             (2) Be sure to add the solvent(s) in order.

Clinical Trial Information
NCT Number Recruitment interventions Conditions Sponsor/Collaborators Start Date Phases
NCT03236974 Completed Drug: Standard Arm - Fulvestrant
Drug: AZD9496
Postmenopausal Women With ER+
HER2- Primary Breast Cancer
AstraZeneca October 5, 2017 Phase 1
NCT02248090 Completed Drug: AZD9496 ER+ HER2- Advanced Breast
Cancer
AstraZeneca October 22, 2014 Phase 1
NCT02780713 Completed Drug: AZD9496
(Reference)
Drug: AZD9496 Variant A
Breast Cancer AstraZeneca June 2, 2016 Phase 1
Biological Data
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