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SARS-CoV-2-IN-6

Cat No.:V53063 Purity: ≥98%
SARS-CoV-2-IN-6 is a SARS-CoV-2 3CLpro inhibitor that displays potent enzyme inhibitory activity with IC50 of 73 nM.
SARS-CoV-2-IN-6
SARS-CoV-2-IN-6 Chemical Structure CAS No.: 2725749-22-2
Product category: SARS-CoV
This product is for research use only, not for human use. We do not sell to patients.
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Product Description
SARS-CoV-2-IN-6 is a SARS-CoV-2 3CLpro inhibitor that displays potent enzyme inhibitory activity with IC50 of 73 nM.
SARS-CoV-2-IN-6 (CAS# 2725749-22-2) is a chlorinated heteroaryl small-molecule that potently inhibits the SARS-CoV-2 main protease 3CLpro. With a molecular formula of C17H13ClN2O2 and molecular weight of 312.75, this compound displays potent enzyme inhibitory activity with an IC50 of 73 nM. SARS-CoV-2-IN-6 is a SARS-CoV-2 3CLpro inhibitor that shows the most potent enzyme inhibitory IC50 value of 73 nM. This compound is a valuable tool for studying SARS-CoV-2 infection and developing antiviral therapeutics.
Biological Activity I Assay Protocols (From Reference)
Targets
SARS-CoV-2-IN-6 targets the SARS-CoV-2 main protease 3CLpro (also known as Mpro or nsp5), a key enzyme essential for viral replication. 3CLpro is responsible for cleaving the viral polyprotein into functional proteins required for viral replication and assembly. Inhibition of 3CLpro prevents viral replication and is a validated antiviral strategy. The compound's potent inhibition with an IC50 of 73 nM demonstrates strong binding affinity to the enzyme active site.
ln Vitro
SARS-CoV-2-IN-6 displays potent enzyme inhibitory activity with an IC50 of 73 nM against SARS-CoV-2 3CLpro. As a 3CLpro inhibitor, it shows the most potent enzyme inhibitory IC50 value of 73 nM among tested compounds. The compound's potent in vitro activity demonstrates its potential as an antiviral agent against SARS-CoV-2. Further detailed studies on its mechanism of inhibition and selectivity against related proteases would provide additional insights into its antiviral potential.
ln Vivo
In vivo studies for SARS-CoV-2-IN-6 have not been extensively documented in the available literature. As a potent 3CLpro inhibitor with an IC50 of 73 nM, the compound is expected to show antiviral activity in vivo. Studies in appropriate animal models of SARS-CoV-2 infection would be needed to evaluate its in vivo efficacy, pharmacokinetics, and safety profile. The compound's small molecule properties suggest potential for oral bioavailability and tissue penetration.
Enzyme Assay
For 3CLpro enzyme inhibition assays, purified SARS-CoV-2 3CLpro is incubated with a fluorogenic peptide substrate (e.g., Dabcyl-KTSAVLQSGFRKME-Edans) and SARS-CoV-2-IN-6 at various concentrations. The cleavage of the substrate by the enzyme results in fluorescence increase, which is monitored over time using a fluorescence plate reader at appropriate excitation/emission wavelengths. IC50 values are calculated from dose-response curves by fitting the data to a four-parameter logistic equation. Enzyme kinetics (Km, Vmax, and inhibition mode) are determined by varying substrate concentrations in the presence of fixed inhibitor concentrations.
Cell Assay
For antiviral activity evaluation, Vero E6 or other susceptible cell lines are cultured in appropriate media and infected with SARS-CoV-2 at a suitable multiplicity of infection. Cells are treated with SARS-CoV-2-IN-6 at various concentrations (typically 0.001-100 μM) for 24-48 hours post-infection. Viral replication is assessed by qRT-PCR to measure viral RNA levels in culture supernatants, or by plaque reduction assays to determine the number of infectious viral particles. Cytotoxicity is assessed in parallel using MTT or CellTiter-Glo assays to determine the selectivity index.
Animal Protocol
For in vivo antiviral efficacy studies, appropriate animal models (e.g., transgenic mice expressing human ACE2 or hamster models) would be infected with SARS-CoV-2 and administered SARS-CoV-2-IN-6 orally or intraperitoneally. Viral load in lung tissues and other organs would be measured by qRT-PCR, and histopathological analysis would assess lung inflammation and damage. Survival and body weight would be monitored. However, detailed in vivo protocols for SARS-CoV-2-IN-6 have not been extensively reported in the literature.
ADME/Pharmacokinetics
Pharmacokinetic properties of SARS-CoV-2-IN-6 have not been fully characterized in the available literature. The compound has a molecular weight of 312.75 and is a small molecule with potential for oral bioavailability. As a 3CLpro inhibitor with potent in vitro activity (IC50 73 nM), the compound's pharmacokinetic properties would be critical for its development as an antiviral therapeutic. Comprehensive PK studies including bioavailability, half-life, protein binding, and tissue distribution are needed. The compound is typically stored at -20°C.
Toxicity/Toxicokinetics
SARS-CoV-2-IN-6 is a research compound intended for laboratory use only and is not approved for human therapeutic use. As a SARS-CoV-2 3CLpro inhibitor with an IC50 of 73 nM, it is a valuable tool for studying SARS-CoV-2 infection and developing antiviral therapeutics. Standard laboratory safety precautions should be followed when handling this compound. Storage at -20°C is recommended.
References

[1]. Indole Chloropyridinyl Ester-Derived SARS-CoV-2 3CLpro Inhibitors: Enzyme Inhibition, Antiviral Efficacy, Structure-Activity Relationship, and X-ray Structural Studies. J Med Chem. 2021 Oct 14;64(19):14702-14714.

Additional Infomation
SARS-CoV-2-IN-6 is a SARS-CoV-2 3CLpro inhibitor with molecular formula C17H13ClN2O2 and molecular weight 312.75. It displays potent enzyme inhibitory activity with an IC50 of 73 nM. The compound targets the main protease essential for viral replication. It is an investigational compound for research use only and has not been approved for clinical applications. Storage at -20°C is recommended.
These protocols are for reference only. InvivoChem does not independently validate these methods.
Physicochemical Properties
Exact Mass
312.067
CAS #
2725749-22-2
PubChem CID
156907341
Appearance
Off-white to light yellow solid powder
Hydrogen Bond Donor Count
0
Hydrogen Bond Acceptor Count
3
Rotatable Bond Count
5
Heavy Atom Count
22
Complexity
417
Defined Atom Stereocenter Count
0
SMILES
C=CCN1C=CC2=C(C=CC=C21)C(=O)OC3=CC(=CN=C3)Cl
InChi Key
XBVPAGLILYEOGS-UHFFFAOYSA-N
InChi Code
InChI=1S/C17H13ClN2O2/c1-2-7-20-8-6-14-15(4-3-5-16(14)20)17(21)22-13-9-12(18)10-19-11-13/h2-6,8-11H,1,7H2
Chemical Name
(5-chloro-3-pyridinyl) 1-prop-2-enylindole-4-carboxylate
HS Tariff Code
2934.99.9001
Storage

Powder      -20°C    3 years

                     4°C     2 years

In solvent   -80°C    6 months

                  -20°C    1 month

Shipping Condition
Room temperature (This product is stable at ambient temperature for a few days during ordinary shipping and time spent in Customs)
Solubility Data
Solubility (In Vitro)
DMSO : 100 mg/mL (319.74 mM)
Solubility (In Vivo)
Solubility in Formulation 1: ≥ 2.5 mg/mL (7.99 mM) (saturation unknown) in 10% DMSO + 40% PEG300 + 5% Tween80 + 45% Saline (add these co-solvents sequentially from left to right, and one by one), clear solution.
For example, if 1 mL of working solution is to be prepared, you can add 100 μL of 25.0 mg/mL clear DMSO stock solution to 400 μL PEG300 and mix evenly; then add 50 μL Tween-80 to the above solution and mix evenly; then add 450 μL normal saline to adjust the volume to 1 mL.
Preparation of saline: Dissolve 0.9 g of sodium chloride in 100 mL ddH₂ O to obtain a clear solution.

Solubility in Formulation 2: ≥ 2.5 mg/mL (7.99 mM) (saturation unknown) in 10% DMSO + 90% (20% SBE-β-CD in Saline) (add these co-solvents sequentially from left to right, and one by one), clear solution.
For example, if 1 mL of working solution is to be prepared, you can add 100 μL of 25.0 mg/mL clear DMSO stock solution to 900 μL of 20% SBE-β-CD physiological saline solution and mix evenly.
Preparation of 20% SBE-β-CD in Saline (4°C,1 week): Dissolve 2 g SBE-β-CD in 10 mL saline to obtain a clear solution.

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Solubility in Formulation 3: ≥ 2.5 mg/mL (7.99 mM) (saturation unknown) in 10% DMSO + 90% Corn Oil (add these co-solvents sequentially from left to right, and one by one), clear solution.
For example, if 1 mL of working solution is to be prepared, you can add 100 μL of 25.0 mg/mL clear DMSO stock solution to 900 μL of corn oil and mix evenly.


 (Please use freshly prepared in vivo formulations for optimal results.)
Calculator

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An example of molarity calculation using the molarity calculator is shown below:
What is the mass of compound required to make a 10 mM stock solution in 5 ml of DMSO given that the molecular weight of the compound is 350.26 g/mol?
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  • The answer of 17.513 mg appears in the Mass box. In a similar way, you may calculate the volume and concentration.

Dilution Calculator allows you to calculate how to dilute a stock solution of known concentrations. For example, you may Enter C1, C2 & V2 to calculate V1, as detailed below:

What volume of a given 10 mM stock solution is required to make 25 ml of a 25 μM solution?
Using the equation C1V1 = C2V2, where C1=10 mM, C2=25 μM, V2=25 ml and V1 is the unknown:
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  • The answer of 62.5 μL (0.1 ml) appears in the Volume (Start) box
g/mol

Molecular Weight Calculator allows you to calculate the molar mass and elemental composition of a compound, as detailed below:

Note: Chemical formula is case sensitive: C12H18N3O4  c12h18n3o4
Instructions to calculate molar mass (molecular weight) of a chemical compound:
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Definitions of molecular mass, molecular weight, molar mass and molar weight:
  • Molecular mass (or molecular weight) is the mass of one molecule of a substance and is expressed in the unified atomic mass units (u). (1 u is equal to 1/12 the mass of one atom of carbon-12)
  • Molar mass (molar weight) is the mass of one mole of a substance and is expressed in g/mol.
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  • The answer appears in the Volume (to add to vial) box
In vivo Formulation Calculator (Clear solution)
Step 1: Enter information below (Recommended: An additional animal to make allowance for loss during the experiment)
Step 2: Enter in vivo formulation (This is only a calculator, not the exact formulation for a specific product. Please contact us first if there is no in vivo formulation in the solubility section.)
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Calculation results

Working concentration mg/mL;

Method for preparing DMSO stock solution mg drug pre-dissolved in μL DMSO (stock solution concentration mg/mL). Please contact us first if the concentration exceeds the DMSO solubility of the batch of drug.

Method for preparing in vivo formulation:Take μL DMSO stock solution, next add μL PEG300, mix and clarify, next addμL Tween 80, mix and clarify, next add μL ddH2O,mix and clarify.

(1) Please be sure that the solution is clear before the addition of next solvent. Dissolution methods like vortex, ultrasound or warming and heat may be used to aid dissolving.
             (2) Be sure to add the solvent(s) in order.

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