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NITD-2

Alias: NITD2; NITD 2; NITD-2
Cat No.:V41105 Purity: ≥98%
NITD-2 is an inhibitor of the dengue virus (DENV) polymerase that prevents the DENV RdRp protein from causing RNA elongation.
NITD-2
NITD-2 Chemical Structure CAS No.: 1197896-79-9
Product category: DNA(RNA) Synthesis
This product is for research use only, not for human use. We do not sell to patients.
Size Price Stock Qty
1mg
5mg
10mg
25mg
50mg
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Product Description
NITD-2 is an inhibitor of the dengue virus (DENV) polymerase that prevents the DENV RdRp protein from causing RNA elongation. The permeability of NITD-2's cell membrane is low.
NITD-2 is a dengue virus (DENV) polymerase inhibitor that inhibits DENV RNA-dependent RNA polymerase (RdRp) protein-mediated RNA elongation. It is a valuable research tool for characterizing replication-blocking responses and antiviral lead identification. It has poor cell membrane penetration.
Biological Activity I Assay Protocols (From Reference)
Targets
DENV RdRp (RNA-dependent RNA polymerase). NITD-2 prevents the DENV RdRp protein from causing RNA elongation, thereby blocking viral RNA amplification. Resistance to NITD-2 is linked to mutations in the viral RdRp that alter its affinity for the drug, such as the S759N substitution.
ln Vitro
NITD-2 prevents the creation of new RNA [1]. The lack of antiviral action shown by NITD-2 in cell culture was caused by inadequate cell penetration[1].
In vitro, NITD-2 inhibits DENV RdRp-mediated RNA elongation in enzymatic assays. It is widely used to characterize replication-blocking responses due to its strong inhibition of viral RNA amplification pathways. Detailed IC50 values for viral replication in cell culture are available from specialized databases.
ln Vivo
In vivo activity data for NITD-2 is not extensively detailed in the literature. As a DENV polymerase inhibitor, it is expected to reduce viral load and improve survival in animal models of dengue virus infection. Its poor cell membrane permeability may limit its in vivo efficacy.
Enzyme Assay
In vitro enzyme assays use recombinant DENV RdRp protein, a primer-template RNA substrate, and NTPs. The incorporation of radioactive or fluorescently labeled nucleotides is measured. The compound is incubated with the enzyme and substrates, and the inhibition of RNA elongation is quantified. IC50 values are calculated from dose-response curves.
Cell Assay
In vitro antiviral activity is assessed in DENV-infected cell lines (e.g., Vero, Huh-7 cells). Cells are treated with NITD-2 and viral RNA levels are measured by qRT-PCR. Viral titers are determined by plaque assay. Cytotoxicity is evaluated using standard cell viability assays (e.g., MTT).
Animal Protocol
In vivo efficacy studies are typically performed in mouse models of DENV infection using immunocompromised mice (e.g., AG129 mice). NITD-2 is administered via intraperitoneal or oral routes. Viral loads in blood and tissues are quantified by qRT-PCR. Survival rates and clinical scores are monitored.
ADME/Pharmacokinetics
Pharmacokinetic properties of NITD-2 include poor cell membrane permeability, which may limit its oral bioavailability and tissue distribution. It has a molecular weight of 433.48 and is soluble in DMSO. It is recommended to store at -20°C and protect from light.
Toxicity/Toxicokinetics
Detailed toxicological profiles of NITD-2 are not extensively reported. As a research compound, it is expected to have a manageable safety profile at the concentrations used in antiviral assays. Cytotoxicity is assessed in parallel with antiviral activity in cell-based assays to determine the selectivity index.
References

[1]. Inhibition of dengue virus polymerase by blocking of the RNA tunnel. J Virol. 2010 Jun;84(11):5678-86.

Additional Infomation
NITD-2 is a research compound targeting dengue virus polymerase. It is used in antiviral drug discovery efforts and to study flavivirus replication. It is not approved for clinical use. Its molecular formula is C23H19N3O4S and its molecular weight is 433.48.
These protocols are for reference only. InvivoChem does not independently validate these methods.
Physicochemical Properties
Molecular Formula
C23H19N3O4S
Molecular Weight
433.4797
Exact Mass
433.11
Elemental Analysis
C, 63.73; H, 4.42; N, 9.69; O, 14.76; S, 7.40
CAS #
1197896-79-9
PubChem CID
44607341
Appearance
Off-white to light yellow solid powder
LogP
4.1
Hydrogen Bond Donor Count
2
Hydrogen Bond Acceptor Count
6
Rotatable Bond Count
7
Heavy Atom Count
31
Complexity
704
Defined Atom Stereocenter Count
0
SMILES
C1=CC=C(C=C1)CN2C=C(C=N2)C3=CC(=CC=C3)S(=O)(=O)NC4=CC=CC=C4C(=O)O
InChi Key
PHQOBFYGHBBCBV-UHFFFAOYSA-N
InChi Code
InChI=1S/C23H19N3O4S/c27-23(28)21-11-4-5-12-22(21)25-31(29,30)20-10-6-9-18(13-20)19-14-24-26(16-19)15-17-7-2-1-3-8-17/h1-14,16,25H,15H2,(H,27,28)
Chemical Name
2-[[3-(1-benzylpyrazol-4-yl)phenyl]sulfonylamino]benzoic acid
Synonyms
NITD2; NITD 2; NITD-2
HS Tariff Code
2934.99.9001
Storage

Powder      -20°C    3 years

                     4°C     2 years

In solvent   -80°C    6 months

                  -20°C    1 month

Shipping Condition
Room temperature (This product is stable at ambient temperature for a few days during ordinary shipping and time spent in Customs)
Solubility Data
Solubility (In Vitro)
DMSO : ~100 mg/mL (~230.7 mM)
Solubility (In Vivo)
Solubility in Formulation 1: ≥ 2.5 mg/mL (5.77 mM) (saturation unknown) in 10% DMSO + 90% Corn Oil (add these co-solvents sequentially from left to right, and one by one), clear solution.
For example, if 1 mL of working solution is to be prepared, you can add 100 μL of 25.0 mg/mL clear DMSO stock solution to 900 μL of corn oil and mix evenly.

 (Please use freshly prepared in vivo formulations for optimal results.)
Preparing Stock Solutions 1 mg 5 mg 10 mg
1 mM 2.3069 mL 11.5346 mL 23.0691 mL
5 mM 0.4614 mL 2.3069 mL 4.6138 mL
10 mM 0.2307 mL 1.1535 mL 2.3069 mL

*Note: Please select an appropriate solvent for the preparation of stock solution based on your experiment needs. For most products, DMSO can be used for preparing stock solutions (e.g. 5 mM, 10 mM, or 20 mM concentration); some products with high aqueous solubility may be dissolved in water directly. Solubility information is available at the above Solubility Data section. Once the stock solution is prepared, aliquot it to routine usage volumes and store at -20°C or -80°C. Avoid repeated freeze and thaw cycles.

Calculator

Molarity Calculator allows you to calculate the mass, volume, and/or concentration required for a solution, as detailed below:

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An example of molarity calculation using the molarity calculator is shown below:
What is the mass of compound required to make a 10 mM stock solution in 5 ml of DMSO given that the molecular weight of the compound is 350.26 g/mol?
  • Enter 350.26 in the Molecular Weight (MW) box
  • Enter 10 in the Concentration box and choose the correct unit (mM)
  • Enter 5 in the Volume box and choose the correct unit (mL)
  • Click the “Calculate” button
  • The answer of 17.513 mg appears in the Mass box. In a similar way, you may calculate the volume and concentration.

Dilution Calculator allows you to calculate how to dilute a stock solution of known concentrations. For example, you may Enter C1, C2 & V2 to calculate V1, as detailed below:

What volume of a given 10 mM stock solution is required to make 25 ml of a 25 μM solution?
Using the equation C1V1 = C2V2, where C1=10 mM, C2=25 μM, V2=25 ml and V1 is the unknown:
  • Enter 10 into the Concentration (Start) box and choose the correct unit (mM)
  • Enter 25 into the Concentration (End) box and select the correct unit (mM)
  • Enter 25 into the Volume (End) box and choose the correct unit (mL)
  • Click the “Calculate” button
  • The answer of 62.5 μL (0.1 ml) appears in the Volume (Start) box
g/mol

Molecular Weight Calculator allows you to calculate the molar mass and elemental composition of a compound, as detailed below:

Note: Chemical formula is case sensitive: C12H18N3O4  c12h18n3o4
Instructions to calculate molar mass (molecular weight) of a chemical compound:
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Definitions of molecular mass, molecular weight, molar mass and molar weight:
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  • Molar mass (molar weight) is the mass of one mole of a substance and is expressed in g/mol.
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Reconstitution Calculator allows you to calculate the volume of solvent required to reconstitute your vial.

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  • The answer appears in the Volume (to add to vial) box
In vivo Formulation Calculator (Clear solution)
Step 1: Enter information below (Recommended: An additional animal to make allowance for loss during the experiment)
Step 2: Enter in vivo formulation (This is only a calculator, not the exact formulation for a specific product. Please contact us first if there is no in vivo formulation in the solubility section.)
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Calculation results

Working concentration mg/mL;

Method for preparing DMSO stock solution mg drug pre-dissolved in μL DMSO (stock solution concentration mg/mL). Please contact us first if the concentration exceeds the DMSO solubility of the batch of drug.

Method for preparing in vivo formulation:Take μL DMSO stock solution, next add μL PEG300, mix and clarify, next addμL Tween 80, mix and clarify, next add μL ddH2O,mix and clarify.

(1) Please be sure that the solution is clear before the addition of next solvent. Dissolution methods like vortex, ultrasound or warming and heat may be used to aid dissolving.
             (2) Be sure to add the solvent(s) in order.

Biological Data
  • Photoreactive inhibitor of DENV-2 NS5 RdRp. (Α) Structure of the photoreactive inhibitor NITD-29. J Virol . 2010 Jun;84(11):5678-86.
  • MS analysis of UV-cross-linked DENV-2 NS5 and NITD-29 complex. J Virol . 2010 Jun;84(11):5678-86.
  • Binding site of NITD-29 in the DENV RdRp domain. J Virol . 2010 Jun;84(11):5678-86.
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