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N6-(2-Hydroxyethyl)adenosine

Cat No.:V55271 Purity: ≥98%
N6-(2-Hydroxyethyl)adenosine is an analogue of purine nucleoside.
N6-(2-Hydroxyethyl)adenosine
N6-(2-Hydroxyethyl)adenosine Chemical Structure CAS No.: 4338-48-1
Product category: Nucleoside Antimetabolite/Analog
This product is for research use only, not for human use. We do not sell to patients.
Size Price Stock Qty
100mg
Other Sizes
Official Supplier of:
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Product Description
N6-(2-Hydroxyethyl)adenosine is an analogue of purine nucleoside. Purine nucleoside analogues have broad-spectrum anticancer effect targeting indolent lymphoid malignancies. The anti-cancer mechanism in this process relies on inhibiting DNA synthesis and inducing apoptosis.
N6-(2-Hydroxyethyl)adenosine (CAS 4338-48-1) is a purine nucleoside analog with a hydroxyethyl group at the N6 position of the adenine base. Its molecular formula is C12H17N5O5 with a molecular weight of 311.29 g/mol. This compound is a purine nucleoside analog with broad antitumor activity targeting indolent lymphoid malignancies. The compound inhibits the NF-κB/Smad signaling pathway and exhibits anti-hyperglycemia, antioxidant, antitumor, anti-inflammatory, and insecticidal activities.
Biological Activity I Assay Protocols (From Reference)
Targets
N6-(2-Hydroxyethyl)adenosine targets purine nucleoside metabolism and signaling pathways. The compound inhibits the NF-κB/Smad signaling pathway. As a purine nucleoside analog, the compound can be incorporated into nucleic acids or interfere with purine metabolism. The anticancer mechanism relies on inhibiting DNA synthesis and inducing apoptosis.
ln Vitro
In cell-free biochemical systems, N6-(2-Hydroxyethyl)adenosine can be used to study purine nucleoside metabolism and signaling. The compound's effects on NF-κB/Smad signaling can be assessed in cell-free systems using purified components or reporter assays.
ln Vivo
In cell-based assays, N6-(2-Hydroxyethyl)adenosine exhibits broad antitumor activity targeting indolent lymphoid malignancies. The compound inhibits DNA synthesis and induces apoptosis in cancer cells. It also inhibits the NF-κB/Smad signaling pathway and exhibits anti-hyperglycemia, antioxidant, anti-inflammatory, and insecticidal activities.
Enzyme Assay
The cell-free assay for studying N6-(2-Hydroxyethyl)adenosine involves measuring its effects on signaling pathways or enzyme activities. The compound's effects on NF-κB/Smad signaling can be assessed using in vitro kinase assays or protein-protein interaction studies. The inhibition of DNA synthesis can be measured using cell-free DNA polymerase assays.
Cell Assay
Cell-based assays for anti-tumor activity involve culturing cancer cell lines and treating them with N6-(2-Hydroxyethyl)adenosine at concentrations ranging from 0.1 to 100 μM. Cells are incubated for 24-72 hours, and cell viability is assessed using MTT or CCK-8 assays. Apoptosis is assessed by Annexin V staining or caspase activity assays. The effect on NF-κB/Smad signaling is assessed by Western blotting or reporter assays.
Animal Protocol
There is no established animal experimental protocol for N6-(2-Hydroxyethyl)adenosine specifically. As a purine nucleoside analog with antitumor activity, the compound could potentially be evaluated in animal models of cancer.
ADME/Pharmacokinetics
Pharmacokinetic properties of N6-(2-Hydroxyethyl)adenosine have not been extensively reported. As a small molecule with molecular weight of 311.29 g/mol, the compound would be expected to have reasonable bioavailability and tissue penetration. Further pharmacokinetic studies would be required.
Toxicity/Toxicokinetics
Toxicity data for N6-(2-Hydroxyethyl)adenosine are not well documented. As a purine nucleoside analog, the compound may have effects on normal cells as well as cancer cells. Standard toxicity studies would be required to determine the safety profile.
References

[1]. Potential and promising anticancer drugs from adenosine and its analogs. Drug Discov Today. 2021 Jun;26(6):1490-1500.

[2]. Robak T, Robak P. Purine nucleoside analogs in the treatment of rarer chronic lymphoid leukemias. Curr Pharm Des. 2012;18(23):3373-88.

Additional Infomation
Reports indicate that (2R,3R,4S,5R)-2-(6-((2-hydroxyethyl)amino)-9H-purin-9-yl)-5-(hydroxymethyl)tetrahydrofuran-3,4-diol has been found in Isaria japonica, Cordyceps pruinosa, and Micromeles japonica, and related data are available.
N6-(2-Hydroxyethyl)adenosine is a research compound with broad biological activities including antitumor, anti-inflammatory, antioxidant, and anti-hyperglycemia effects. It is a purine nucleoside analog that inhibits DNA synthesis and induces apoptosis. It is not an approved pharmaceutical and has no clinical trial history. This product is intended for research use only.
These protocols are for reference only. InvivoChem does not independently validate these methods.
Physicochemical Properties
Molecular Formula
C12H17N5O5
Molecular Weight
311.29
Exact Mass
311.123
CAS #
4338-48-1
PubChem CID
96124
Appearance
White to off-white solid powder
Density
1.88g/cm3
Boiling Point
725.8ºC at 760 mmHg
Melting Point
194-195ºC
Flash Point
392.7ºC
Index of Refraction
1.806
LogP
-1.1
Hydrogen Bond Donor Count
5
Hydrogen Bond Acceptor Count
9
Rotatable Bond Count
5
Heavy Atom Count
22
Complexity
378
Defined Atom Stereocenter Count
4
SMILES
C1=NC(=C2C(=N1)N(C=N2)[C@H]3[C@@H]([C@@H]([C@H](O3)CO)O)O)NCCO
InChi Key
BBOCDRLDMQHWJP-WOUKDFQISA-N
InChi Code
InChI=1S/C12H17N5O5/c18-2-1-13-10-7-11(15-4-14-10)17(5-16-7)12-9(21)8(20)6(3-19)22-12/h4-6,8-9,12,18-21H,1-3H2,(H,13,14,15)/t6-,8-,9-,12-/m1/s1
Chemical Name
(2R,3R,4S,5R)-2-[6-(2-hydroxyethylamino)purin-9-yl]-5-(hydroxymethyl)oxolane-3,4-diol
HS Tariff Code
2934.99.9001
Storage

Powder      -20°C    3 years

                     4°C     2 years

In solvent   -80°C    6 months

                  -20°C    1 month

Note: This product requires protection from light (avoid light exposure) during transportation and storage.
Shipping Condition
Room temperature (This product is stable at ambient temperature for a few days during ordinary shipping and time spent in Customs)
Solubility Data
Solubility (In Vitro)
DMSO: ~100 mg/mL (~321.2 mM; with ultrasonication)
Solubility (In Vivo)
Solubility in Formulation 1: ≥ 2.5 mg/mL (8.03 mM) (saturation unknown) in 10% DMSO + 40% PEG300 + 5% Tween-80 + 45% Saline (add these co-solvents sequentially from left to right, and one by one), Clear solution.
For example, if 1 mL of working solution is to be prepared, you can add 100 μL of DMSO stock solution (25.0 mg/mL) to 400 μL of PEG300 and mix well; then add 50 μL of Tween-80 and mix well; finally add 450 μL of physiological saline and adjust the volume to 1 mL.
Preparation of saline: Dissolve 0.9 g of sodium chloride in 100 mL ddH₂ O to obtain a clear solution.

Solubility in Formulation 2: ≥ 2.5 mg/mL (8.03 mM) (saturation unknown) in 10% DMSO + 90% (20% SBE-β-CD in Saline) (add these co-solvents sequentially from left to right, and one by one), Clear solution.
For example, if 1 mL of working solution is to be prepared, you can add 100 μL of DMSO stock solution (25.0 mg/mL) to 900 μL of 20% SBE-β-CD saline and mix well.
Preparation of 20% SBE-β-CD in Saline (4°C,1 week): Dissolve 2 g SBE-β-CD in 10 mL saline to obtain a clear solution.

Solubility in Formulation 3: ≥ 2.5 mg/mL (8.03 mM) (saturation unknown) in 10% DMSO + 90% Corn Oil (add these co-solvents sequentially from left to right, and one by one), Clear solution.
For example, if 1 mL of working solution is to be prepared, you can add 100 μL of DMSO stock solution (25.0 mg/mL) to 900 μL of corn oil and mix well.

 (Please use freshly prepared in vivo formulations for optimal results.)
Preparing Stock Solutions 1 mg 5 mg 10 mg
1 mM 3.2124 mL 16.0622 mL 32.1244 mL
5 mM 0.6425 mL 3.2124 mL 6.4249 mL
10 mM 0.3212 mL 1.6062 mL 3.2124 mL

*Note: Please select an appropriate solvent for the preparation of stock solution based on your experiment needs. For most products, DMSO can be used for preparing stock solutions (e.g. 5 mM, 10 mM, or 20 mM concentration); some products with high aqueous solubility may be dissolved in water directly. Solubility information is available at the above Solubility Data section. Once the stock solution is prepared, aliquot it to routine usage volumes and store at -20°C or -80°C. Avoid repeated freeze and thaw cycles.

Calculator

Molarity Calculator allows you to calculate the mass, volume, and/or concentration required for a solution, as detailed below:

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An example of molarity calculation using the molarity calculator is shown below:
What is the mass of compound required to make a 10 mM stock solution in 5 ml of DMSO given that the molecular weight of the compound is 350.26 g/mol?
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  • The answer of 17.513 mg appears in the Mass box. In a similar way, you may calculate the volume and concentration.

Dilution Calculator allows you to calculate how to dilute a stock solution of known concentrations. For example, you may Enter C1, C2 & V2 to calculate V1, as detailed below:

What volume of a given 10 mM stock solution is required to make 25 ml of a 25 μM solution?
Using the equation C1V1 = C2V2, where C1=10 mM, C2=25 μM, V2=25 ml and V1 is the unknown:
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  • Enter 25 into the Volume (End) box and choose the correct unit (mL)
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  • The answer of 62.5 μL (0.1 ml) appears in the Volume (Start) box
g/mol

Molecular Weight Calculator allows you to calculate the molar mass and elemental composition of a compound, as detailed below:

Note: Chemical formula is case sensitive: C12H18N3O4  c12h18n3o4
Instructions to calculate molar mass (molecular weight) of a chemical compound:
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Definitions of molecular mass, molecular weight, molar mass and molar weight:
  • Molecular mass (or molecular weight) is the mass of one molecule of a substance and is expressed in the unified atomic mass units (u). (1 u is equal to 1/12 the mass of one atom of carbon-12)
  • Molar mass (molar weight) is the mass of one mole of a substance and is expressed in g/mol.
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Reconstitution Calculator allows you to calculate the volume of solvent required to reconstitute your vial.

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  • The answer appears in the Volume (to add to vial) box
In vivo Formulation Calculator (Clear solution)
Step 1: Enter information below (Recommended: An additional animal to make allowance for loss during the experiment)
Step 2: Enter in vivo formulation (This is only a calculator, not the exact formulation for a specific product. Please contact us first if there is no in vivo formulation in the solubility section.)
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Calculation results

Working concentration: mg/mL;

Method for preparing DMSO stock solution: mg drug pre-dissolved in μL DMSO (stock solution concentration mg/mL). Please contact us first if the concentration exceeds the DMSO solubility of the batch of drug.

Method for preparing in vivo formulation::Take μL DMSO stock solution, next add μL PEG300, mix and clarify, next addμL Tween 80, mix and clarify, next add μL ddH2O,mix and clarify.

(1) Please be sure that the solution is clear before the addition of next solvent. Dissolution methods like vortex, ultrasound or warming and heat may be used to aid dissolving.
             (2) Be sure to add the solvent(s) in order.

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