| Size | Price | |
|---|---|---|
| Other Sizes |
| Targets |
5'-O-DMT-2'-O-TBDMS-Ac-rC does not have a specific biological target as it is a synthetic building block for oligonucleotide synthesis. Its role is to serve as a protected cytidine monomer for the synthesis of DNA or RNA oligonucleotides. The DMT, TBDMS, and acetyl protecting groups allow for selective deprotection during oligonucleotide synthesis.
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|---|---|
| ln Vitro |
In vitro activity is not applicable to 5'-O-DMT-2'-O-TBDMS-Ac-rC as it is a synthetic intermediate. Its utility is demonstrated in its ability to be incorporated into DNA or RNA oligonucleotides through solid-phase synthesis. The compound's purity ensures high-quality oligonucleotide synthesis for molecular biology applications.
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| ln Vivo |
In vivo activity is not applicable to 5'-O-DMT-2'-O-TBDMS-Ac-rC as it is a chemical reagent for research use only, not a therapeutic agent. The compound is not intended for administration to living organisms.
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| Enzyme Assay |
In vitro enzyme/receptor binding assays are not performed for 5'-O-DMT-2'-O-TBDMS-Ac-rC, as it is a synthetic intermediate. Its characterization typically involves chemical analysis methods such as HPLC, NMR, and mass spectrometry to confirm identity and purity.
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| Cell Assay |
In vitro cellular assays are not applicable to 5'-O-DMT-2'-O-TBDMS-Ac-rC. The compound is used exclusively in chemical synthesis reactions for the production of DNA or RNA oligonucleotides, which can subsequently be used in cellular assays. The compound itself is not tested directly on cells.
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| Animal Protocol |
In vivo animal experiments are not applicable to 5'-O-DMT-2'-O-TBDMS-Ac-rC. The compound is a research chemical used in oligonucleotide synthesis and is not intended for in vivo administration.
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| ADME/Pharmacokinetics |
Pharmacokinetic data are not applicable to 5'-O-DMT-2'-O-TBDMS-Ac-rC as it is a synthetic intermediate, not a therapeutic agent. The compound has a molecular weight of 701.88 and a molecular formula of C38H47N3O8Si. It should be stored at 4°C, protected from light. It is not intended for systemic administration.
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| Toxicity/Toxicokinetics |
Toxicological data for 5'-O-DMT-2'-O-TBDMS-Ac-rC are not applicable as it is a research chemical. The compound is intended for research use only and is not for human therapeutic application. Standard laboratory safety precautions should be followed when handling this compound.
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| Additional Infomation |
5'-O-DMT-2'-O-TBDMS-Ac-rC (CAS#: 121058-85-3) has the molecular formula C38H47N3O8Si and a molecular weight of 701.88. It is a modified nucleoside designed for the synthesis of RNA and DNA oligomers. The compound features DMT, TBDMS, and acetyl protecting groups. It is for research use only.
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| Molecular Formula |
C38H47N3O8SI
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|---|---|
| Molecular Weight |
701.88
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| Exact Mass |
701.313
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| CAS # |
121058-85-3
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| PubChem CID |
11136250
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| Appearance |
White to off-white solid powder
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| Density |
1.19±0.1 g/cm3(Predicted)
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| LogP |
6.525
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| Hydrogen Bond Donor Count |
2
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| Hydrogen Bond Acceptor Count |
8
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| Rotatable Bond Count |
13
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| Heavy Atom Count |
50
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| Complexity |
1190
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| Defined Atom Stereocenter Count |
4
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| SMILES |
CC(=O)NC1=NC(=O)N(C=C1)[C@H]2[C@@H]([C@@H]([C@H](O2)COC(C3=CC=CC=C3)(C4=CC=C(C=C4)OC)C5=CC=C(C=C5)OC)O)O[Si](C)(C)C(C)(C)C
|
| InChi Key |
ZFRWPAYPCFTQHK-HYGOWAQNSA-N
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| InChi Code |
InChI=1S/C38H47N3O8Si/c1-25(42)39-32-22-23-41(36(44)40-32)35-34(49-50(7,8)37(2,3)4)33(43)31(48-35)24-47-38(26-12-10-9-11-13-26,27-14-18-29(45-5)19-15-27)28-16-20-30(46-6)21-17-28/h9-23,31,33-35,43H,24H2,1-8H3,(H,39,40,42,44)/t31-,33-,34-,35-/m1/s1
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| Chemical Name |
N-[1-[(2R,3R,4R,5R)-5-[[bis(4-methoxyphenyl)-phenylmethoxy]methyl]-3-[tert-butyl(dimethyl)silyl]oxy-4-hydroxyoxolan-2-yl]-2-oxopyrimidin-4-yl]acetamide
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| HS Tariff Code |
2934.99.9001
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| Storage |
Powder -20°C 3 years 4°C 2 years In solvent -80°C 6 months -20°C 1 month Note: This product requires protection from light (avoid light exposure) during transportation and storage. |
| Shipping Condition |
Room temperature (This product is stable at ambient temperature for a few days during ordinary shipping and time spent in Customs)
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| Solubility (In Vitro) |
DMSO : 100 mg/mL (142.47 mM)
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|---|---|
| Solubility (In Vivo) |
Solubility in Formulation 1: 2.5 mg/mL (3.56 mM) in 10% DMSO + 90% (20% SBE-β-CD in Saline) (add these co-solvents sequentially from left to right, and one by one), suspension solution; with sonication.
For example, if 1 mL of working solution is to be prepared, you can add 100 μL of 25.0 mg/mL clear DMSO stock solution to 900 μL of 20% SBE-β-CD physiological saline solution and mix evenly. Preparation of 20% SBE-β-CD in Saline (4°C，1 week): Dissolve 2 g SBE-β-CD in 10 mL saline to obtain a clear solution. Solubility in Formulation 2: ≥ 2.5 mg/mL (3.56 mM) (saturation unknown) in 10% DMSO + 90% Corn Oil (add these co-solvents sequentially from left to right, and one by one), clear solution. For example, if 1 mL of working solution is to be prepared, you can add 100 μL of 25.0 mg/mL clear DMSO stock solution to 900 μL of corn oil and mix evenly. (Please use freshly prepared in vivo formulations for optimal results.) |
| Preparing Stock Solutions | 1 mg | 5 mg | 10 mg | |
| 1 mM | 1.4247 mL | 7.1237 mL | 14.2474 mL | |
| 5 mM | 0.2849 mL | 1.4247 mL | 2.8495 mL | |
| 10 mM | 0.1425 mL | 0.7124 mL | 1.4247 mL |
*Note: Please select an appropriate solvent for the preparation of stock solution based on your experiment needs. For most products, DMSO can be used for preparing stock solutions (e.g. 5 mM, 10 mM, or 20 mM concentration); some products with high aqueous solubility may be dissolved in water directly. Solubility information is available at the above Solubility Data section. Once the stock solution is prepared, aliquot it to routine usage volumes and store at -20°C or -80°C. Avoid repeated freeze and thaw cycles.
Calculation results
Working concentration： mg/mL；
Method for preparing DMSO stock solution： mg drug pre-dissolved in μL DMSO (stock solution concentration mg/mL). Please contact us first if the concentration exceeds the DMSO solubility of the batch of drug.
Method for preparing in vivo formulation:：Take μL DMSO stock solution, next add μL PEG300, mix and clarify, next addμL Tween 80, mix and clarify, next add μL ddH2O，mix and clarify.
(1) Please be sure that the solution is clear before the addition of next solvent. Dissolution methods like vortex, ultrasound or warming and heat may be used to aid dissolving.
(2) Be sure to add the solvent(s) in order.
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