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VY-3-135

Alias: VY3-135VY3135 VY-3135VY 3135 VY-3-135 VY 3-135
Cat No.:V3929 Purity: ≥98%
VY3-135 (VY-3135; VY3135) is a novel and potent ACSS2 (acetyl-CoA synthetase 2) inhibitor (IC50 = 44 nM) with antitumor effects.
VY-3-135
VY-3-135 Chemical Structure CAS No.: 1824637-41-3
Product category: ACSS2
This product is for research use only, not for human use. We do not sell to patients.
Size Price Stock Qty
5mg
10mg
25mg
50mg
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Product Description

VY3-135 (VY-3135; VY3135) is a novel and potent ACSS2 (acetyl-CoA synthetase 2) inhibitor ( IC50 = 44 nM) with antitumor effects. Acetyl-CoA is a vitally important and versatile metabolite used for many cellular processes including fatty acid synthesis, ATP production, and protein acetylation. Recent studies have shown that cancer cells upregulate acetyl-CoA synthetase 2 (ACSS2), an enzyme that converts acetate to acetyl-CoA, in response to stresses such as low nutrient availability and hypoxia. Stressed cancer cells use ACSS2 as a means to exploit acetate as an alternative nutrient source. Genetic depletion of ACSS2 in tumors inhibits the growth of a wide variety of cancers. However, there are no studies on the use of an ACSS2 inhibitor to block tumor growth.

Biological Activity I Assay Protocols (From Reference)
ln Vitro
In ACSS2high Brpkp110 and ACSS2low A7C11 cells, VY-3-135 (0.1, 1 μM; for 24 hours) facilitates the relay labeling of qatar by 13C2-linkers [1].
ln Vivo
MDA-MB-468 (ACSS2high) tumor growth is inhibited by VY-3-135 (100 mg/kg/day; sidewall 30 days), whereas WHIM12 (ACSS2low) tumor growth in foam is largely unaffected [1].
References

[1]. Targeting ACSS2 with a Transition-State Mimetic Inhibits Triple-Negative Breast Cancer Growth. Cancer Res. 2021 Mar 1;81(5):1252-1264.

These protocols are for reference only. InvivoChem does not independently validate these methods.
Physicochemical Properties
Molecular Formula
C26H27N3O3
Molecular Weight
429.51
Exact Mass
429.205
Elemental Analysis
C, 72.71; H, 6.34; N, 9.78; O, 11.17
CAS #
1824637-41-3
PubChem CID
92131155
Appearance
White to light yellow solid powder
LogP
3.1
Hydrogen Bond Donor Count
3
Hydrogen Bond Acceptor Count
4
Rotatable Bond Count
7
Heavy Atom Count
32
Complexity
599
Defined Atom Stereocenter Count
1
SMILES
CCN1C2=C(C=CC(=C2)C(=O)NC[C@@H](C)O)N=C1C(C3=CC=CC=C3)(C4=CC=CC=C4)O
InChi Key
KTPYOTKTDCLZHR-GOSISDBHSA-N
InChi Code
InChI=1S/C26H27N3O3/c1-3-29-23-16-19(24(31)27-17-18(2)30)14-15-22(23)28-25(29)26(32,20-10-6-4-7-11-20)21-12-8-5-9-13-21/h4-16,18,30,32H,3,17H2,1-2H3,(H,27,31)/t18-/m1/s1
Chemical Name
3-ethyl-2-[hydroxy(diphenyl)methyl]-N-[(2R)-2-hydroxypropyl]benzimidazole-5-carboxamide
Synonyms
VY3-135VY3135 VY-3135VY 3135 VY-3-135 VY 3-135
HS Tariff Code
2934.99.9001
Storage

Powder      -20°C    3 years

                     4°C     2 years

In solvent   -80°C    6 months

                  -20°C    1 month

Note: This product requires protection from light (avoid light exposure) during transportation and storage.
Shipping Condition
Room temperature (This product is stable at ambient temperature for a few days during ordinary shipping and time spent in Customs)
Solubility Data
Solubility (In Vitro)
DMSO : ~50 mg/mL (~116.41 mM)
Solubility (In Vivo)
Solubility in Formulation 1: ≥ 2.5 mg/mL (5.82 mM) (saturation unknown) in 10% DMSO + 40% PEG300 + 5% Tween80 + 45% Saline (add these co-solvents sequentially from left to right, and one by one), clear solution.
For example, if 1 mL of working solution is to be prepared, you can add 100 μL of 25.0 mg/mL clear DMSO stock solution to 400 μL PEG300 and mix evenly; then add 50 μL Tween-80 to the above solution and mix evenly; then add 450 μL normal saline to adjust the volume to 1 mL.
Preparation of saline: Dissolve 0.9 g of sodium chloride in 100 mL ddH₂ O to obtain a clear solution.

Solubility in Formulation 2: ≥ 2.5 mg/mL (5.82 mM) (saturation unknown) in 10% DMSO + 90% (20% SBE-β-CD in Saline) (add these co-solvents sequentially from left to right, and one by one), clear solution.
For example, if 1 mL of working solution is to be prepared, you can add 100 μL of 25.0 mg/mL clear DMSO stock solution to 900 μL of 20% SBE-β-CD physiological saline solution and mix evenly.
Preparation of 20% SBE-β-CD in Saline (4°C,1 week): Dissolve 2 g SBE-β-CD in 10 mL saline to obtain a clear solution.

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Solubility in Formulation 3: ≥ 2.5 mg/mL (5.82 mM) (saturation unknown) in 10% DMSO + 90% Corn Oil (add these co-solvents sequentially from left to right, and one by one), clear solution.
For example, if 1 mL of working solution is to be prepared, you can add 100 μL of 25.0 mg/mL clear DMSO stock solution to 900 μL of corn oil and mix evenly.


 (Please use freshly prepared in vivo formulations for optimal results.)
Preparing Stock Solutions 1 mg 5 mg 10 mg
1 mM 2.3282 mL 11.6412 mL 23.2823 mL
5 mM 0.4656 mL 2.3282 mL 4.6565 mL
10 mM 0.2328 mL 1.1641 mL 2.3282 mL

*Note: Please select an appropriate solvent for the preparation of stock solution based on your experiment needs. For most products, DMSO can be used for preparing stock solutions (e.g. 5 mM, 10 mM, or 20 mM concentration); some products with high aqueous solubility may be dissolved in water directly. Solubility information is available at the above Solubility Data section. Once the stock solution is prepared, aliquot it to routine usage volumes and store at -20°C or -80°C. Avoid repeated freeze and thaw cycles.

Calculator

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An example of molarity calculation using the molarity calculator is shown below:
What is the mass of compound required to make a 10 mM stock solution in 5 ml of DMSO given that the molecular weight of the compound is 350.26 g/mol?
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  • The answer of 17.513 mg appears in the Mass box. In a similar way, you may calculate the volume and concentration.

Dilution Calculator allows you to calculate how to dilute a stock solution of known concentrations. For example, you may Enter C1, C2 & V2 to calculate V1, as detailed below:

What volume of a given 10 mM stock solution is required to make 25 ml of a 25 μM solution?
Using the equation C1V1 = C2V2, where C1=10 mM, C2=25 μM, V2=25 ml and V1 is the unknown:
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  • The answer of 62.5 μL (0.1 ml) appears in the Volume (Start) box
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Molecular Weight Calculator allows you to calculate the molar mass and elemental composition of a compound, as detailed below:

Note: Chemical formula is case sensitive: C12H18N3O4  c12h18n3o4
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In vivo Formulation Calculator (Clear solution)
Step 1: Enter information below (Recommended: An additional animal to make allowance for loss during the experiment)
Step 2: Enter in vivo formulation (This is only a calculator, not the exact formulation for a specific product. Please contact us first if there is no in vivo formulation in the solubility section.)
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Calculation results

Working concentration mg/mL;

Method for preparing DMSO stock solution mg drug pre-dissolved in μL DMSO (stock solution concentration mg/mL). Please contact us first if the concentration exceeds the DMSO solubility of the batch of drug.

Method for preparing in vivo formulation:Take μL DMSO stock solution, next add μL PEG300, mix and clarify, next addμL Tween 80, mix and clarify, next add μL ddH2O,mix and clarify.

(1) Please be sure that the solution is clear before the addition of next solvent. Dissolution methods like vortex, ultrasound or warming and heat may be used to aid dissolving.
             (2) Be sure to add the solvent(s) in order.

Biological Data
  • VY-3-135 is a potent, stable ACSS2 inhibitor with good bioavailability. (A) Schematic of the forward reaction catalyzed by ACSS2. (B-C) Chemical structures of VY-3-249 and VY-3-135 and IC50 determinations for inhibitors against ACSS1 (blue squares) and ACSS2 (red circles). Data points represent mean (filled shapes) and replicates (empty shapes). (D-E) Mouse and human microsomal stability assay for VY-3-135 and VY-3-249. n = 1. (F) Pharmacokinetic analysis of VY-3-135 by oral gavage, intraperitoneal, and intravenous injection. Data represent mean ± S.D., n = 3 mice/group/time point. Table describes the calculations of pharmacokinetic analysis. Cancer Res . 2021 Mar 1;81(5):1252-1264.
  • VY-3-135 is a potent inhibitor of ACSS2 in cells. (A) Immunoblot for ACSS2, EGFR, HER2 expression in a panel of human breast cancer cell lines. GAPDH is the loading control for ACSS2 and EGFR. ACTB is the loading control for HER2. (B) Enrichment of 100 μM 13C2-acetate in the intracellular palmitate pool in SKBr3 cells treated with vehicle or VY-3-135 and cultured in normoxia and SMEM+10% serum (N10) or hypoxia and SMEM+1% serum (H1) over a 24 hr period. Data represent mean ± S.D., n = 3. (C) Enrichment of 100 μM 13C2-acetate into palmitate in BT474 cells cultured in H1 conditions over a 24 hr period using a 10-fold dilution series of VY-3-135. Data represent mean ± S.D., n = 3. (D) Growth of BT474 and SKBr3 cells in 10 μM VY-3-135 for 72 hours in H1 culture conditions supplemented with 200 μM sodium acetate. Data are mean ± S.D. n = 2 performed in triplicate. p values are student t tests. (E) Enrichment of 13C2-acetate into the intracellular citrate pool. Experimental parameters were identical to panel C. For all metabolomic data adjusted p values are reported on the graphs. p values were generated by 2-way ANOVA with Tukey’s multiple comparisons testing of mole percent enrichment of carbon-13 was used. Cancer Res . 2021 Mar 1;81(5):1252-1264.
  • Knockout or VY-3-135 inhibition of ACSS2 inhibits tumor growth. (A) Enrichment of 100 μM 13C2-acetate into palmitate in A7C11 and Brpkp110 cells cultured in N10 and H1 conditions over a 24 hr period in the presence and absence of VY-3-135. Data represent mean ± S.D., n = 3. Adjusted p values are reported on the graph. 2-way ANOVA Tukey’s multiple comparisons testing of mole percent enrichment of carbon-13. (B) Immunoblot for ACSS2 in A7C11 and Brpkp110 pools after CRISPR-Cas9 targeting of Acss2. Lysates were prepared from cells grown in N10 or H1 over a 24 hr period. sgNTC = single guide RNA against non-targeting control. sgACSS2 = single guide RNA against Acss2. (C) CRISPR-Cas9 knockout of Acss2 in A7C11 cells has a modest effect on tumor growth. Data represent mean ± standard error of the means (S.E.M.) with ANOVA p value displayed, n = 5. (D) CRISPR-Cas9 knockout of Acss2 in Brpkp110 cells causes a significant decrease in tumor growth. Data represent mean ± S.E.M. with ANOVA p value displayed, n = 5. (E) VY-3-135 treatment (100 mpk daily IP) causes a significant decrease in Brpkp110 tumor growth. Data represent mean ± S.E.M. with ANOVA p value displayed, n = 5. Cancer Res . 2021 Mar 1;81(5):1252-1264.
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