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UBCS039

Alias: MC 3154; UBCS-039; UBCS039; MC3154; MC-3154
Cat No.:V27772 Purity: ≥98%
UBCS039 is the first synthesized specific activator of SIRT6 that can induce autophagy in human cancer/tumor cells with EC50 of 38 μM.
UBCS039
UBCS039 Chemical Structure CAS No.: 358721-70-7
Product category: New1
This product is for research use only, not for human use. We do not sell to patients.
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Purity & Quality Control Documentation

Purity: ≥98%

Product Description
UBCS039 is the first synthesized specific activator of SIRT6 that can induce autophagy in human cancer/tumor cells with EC50 of 38 μM.
Biological Activity I Assay Protocols (From Reference)
Targets
SIRT6 (EC50 = 38 μM)
ln Vitro
In human Manhattan, UBCS039 (75 μM, 48 or 72 hours) causes the H3 site of the SIRT6 activator protein to dechondrify [2]. In human Manhattan, UBCS039 induces autophagosome accumulation [2]. By triggering AMP-activated Protein Kinase (AMPK) signaling, UBCS039 promotes autophagy [2].
Enzyme Assay
Sirtuins are protein deacylases regulating metabolism and stress responses, and are implicated in aging-related diseases. Small molecule activators for the human sirtuins Sirt1-7 are sought as chemical tools and potential therapeutics, such as for cancer. Activators are available for Sirt1 and exploit its unique N-terminus, whereas drug-like activators for Sirt2-7 are lacking. We synthesized and screened pyrrolo[1,2-a]quinoxaline derivatives, yielding the first synthetic Sirt6 activators. Biochemical assays show direct, substrate-independent compound binding to the Sirt6 catalytic core and potent activation of Sirt6-dependent deacetylation of peptide substrates and complete nucleosomes. Crystal structures of Sirt6/activator complexes reveal that the compounds bind to a Sirt6-specific acyl channel pocket and identify key interactions. Our results establish potent Sirt6 activation with small molecules and provide a structural basis for further development of Sirt6 activators as tools and therapeutics [1].
Cell Assay
Western Blot Analysis[2]
Cell Types: human H1299 cells.
Tested Concentrations: 75 μM.
Incubation Duration: 48 and 72 hrs (hours).
Experimental Results: Deacetylation of SIRT6-targeted histone H3 sites was induced in human H1299 cells.

Western Blot Analysis[2]
Cell Types: human H1299 cells.
Tested Concentrations: 75 μM.
Incubation Duration: 48 and 72 hrs (hours).
Experimental Results: Deacetylation of SIRT6-targeted histone H3 sites was induced in human H1299 cells.

Cell proliferation assay [2]
Cell Types: human H1299 cells.
Tested Concentrations: 100μM.
Incubation Duration: 48 and 72 hrs (hours).
Experimental Results: Cell proliferation was strongly diminished in a dose-dependent manner starting from day 3 of growth of H1299 and HeLa cell lines (48 hrs (hours) after treatment) compared to control or DMSO-treated cells.
References

[1]. Structural Basis of Sirtuin 6 Activation by Synthetic Small Molecules. Angew. Chem. Int. Ed. 2017, 56, 1007-1011.

[2]. Pharmacological activation of SIRT6 triggers lethal autophagy in human cancer cells. Cell Death and Disease (2018) 9:996.

These protocols are for reference only. InvivoChem does not independently validate these methods.
Physicochemical Properties
Molecular Formula
C16H13N3
Molecular Weight
247.294523000717
Exact Mass
247.11
Elemental Analysis
C, 77.71; H, 5.30; N, 16.99
CAS #
358721-70-7
PubChem CID
2803797
Appearance
Light yellow to yellow solid
LogP
2.5
Hydrogen Bond Donor Count
1
Hydrogen Bond Acceptor Count
2
Rotatable Bond Count
1
Heavy Atom Count
19
Complexity
319
Defined Atom Stereocenter Count
0
InChi Key
BSOBGTYXYGHUTD-UHFFFAOYSA-N
InChi Code
InChI=1S/C16H13N3/c1-2-7-14-13(6-1)18-16(12-5-3-9-17-11-12)15-8-4-10-19(14)15/h1-11,16,18H
Chemical Name
4-Pyridin-3-yl-4,5-dihydro-pyrrolo[1,2-a]quinoxaline
Synonyms
MC 3154; UBCS-039; UBCS039; MC3154; MC-3154
HS Tariff Code
2934.99.9001
Storage

Powder      -20°C    3 years

                     4°C     2 years

In solvent   -80°C    6 months

                  -20°C    1 month

Shipping Condition
Room temperature (This product is stable at ambient temperature for a few days during ordinary shipping and time spent in Customs)
Solubility Data
Solubility (In Vitro)
DMSO : ~100 mg/mL (~404.38 mM)
Solubility (In Vivo)
Solubility in Formulation 1: ≥ 2.08 mg/mL (8.41 mM) (saturation unknown) in 10% DMSO + 40% PEG300 + 5% Tween80 + 45% Saline (add these co-solvents sequentially from left to right, and one by one), clear solution.
For example, if 1 mL of working solution is to be prepared, you can add 100 μL of 20.8 mg/mL clear DMSO stock solution to 400 μL PEG300 and mix evenly; then add 50 μL Tween-80 to the above solution and mix evenly; then add 450 μL normal saline to adjust the volume to 1 mL.
Preparation of saline: Dissolve 0.9 g of sodium chloride in 100 mL ddH₂ O to obtain a clear solution.

Solubility in Formulation 2: ≥ 2.08 mg/mL (8.41 mM) (saturation unknown) in 10% DMSO + 90% (20% SBE-β-CD in Saline) (add these co-solvents sequentially from left to right, and one by one), clear solution.
For example, if 1 mL of working solution is to be prepared, you can add 100 μL of 20.8 mg/mL clear DMSO stock solution to 900 μL of 20% SBE-β-CD physiological saline solution and mix evenly.
Preparation of 20% SBE-β-CD in Saline (4°C,1 week): Dissolve 2 g SBE-β-CD in 10 mL saline to obtain a clear solution.

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Solubility in Formulation 3: ≥ 2.08 mg/mL (8.41 mM) (saturation unknown) in 10% DMSO + 90% Corn Oil (add these co-solvents sequentially from left to right, and one by one), clear solution.
For example, if 1 mL of working solution is to be prepared, you can add 100 μL of 20.8 mg/mL clear DMSO stock solution to 900 μL of corn oil and mix evenly.


 (Please use freshly prepared in vivo formulations for optimal results.)
Preparing Stock Solutions 1 mg 5 mg 10 mg
1 mM 4.0438 mL 20.2192 mL 40.4384 mL
5 mM 0.8088 mL 4.0438 mL 8.0877 mL
10 mM 0.4044 mL 2.0219 mL 4.0438 mL

*Note: Please select an appropriate solvent for the preparation of stock solution based on your experiment needs. For most products, DMSO can be used for preparing stock solutions (e.g. 5 mM, 10 mM, or 20 mM concentration); some products with high aqueous solubility may be dissolved in water directly. Solubility information is available at the above Solubility Data section. Once the stock solution is prepared, aliquot it to routine usage volumes and store at -20°C or -80°C. Avoid repeated freeze and thaw cycles.

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What is the mass of compound required to make a 10 mM stock solution in 5 ml of DMSO given that the molecular weight of the compound is 350.26 g/mol?
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  • The answer of 17.513 mg appears in the Mass box. In a similar way, you may calculate the volume and concentration.

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What volume of a given 10 mM stock solution is required to make 25 ml of a 25 μM solution?
Using the equation C1V1 = C2V2, where C1=10 mM, C2=25 μM, V2=25 ml and V1 is the unknown:
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In vivo Formulation Calculator (Clear solution)
Step 1: Enter information below (Recommended: An additional animal to make allowance for loss during the experiment)
Step 2: Enter in vivo formulation (This is only a calculator, not the exact formulation for a specific product. Please contact us first if there is no in vivo formulation in the solubility section.)
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Calculation results

Working concentration mg/mL;

Method for preparing DMSO stock solution mg drug pre-dissolved in μL DMSO (stock solution concentration mg/mL). Please contact us first if the concentration exceeds the DMSO solubility of the batch of drug.

Method for preparing in vivo formulation:Take μL DMSO stock solution, next add μL PEG300, mix and clarify, next addμL Tween 80, mix and clarify, next add μL ddH2O,mix and clarify.

(1) Please be sure that the solution is clear before the addition of next solvent. Dissolution methods like vortex, ultrasound or warming and heat may be used to aid dissolving.
             (2) Be sure to add the solvent(s) in order.

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