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Zipalertinib (TAS-6417)

Alias: Zipalertinib; TAS-6417; CLN-081; TAS6417; CLN081; TAS 6417;
Cat No.:V5049 Purity: ≥98%
Zipalertinib (TAS6417; CLN-081;TAS-6417) is a novel, potent,orally bioavailableand selective covalent/irreversible EGFR inhibitor with anticancer activity.
Zipalertinib (TAS-6417)
Zipalertinib (TAS-6417) Chemical Structure CAS No.: 1661854-97-2
Product category: EGFR
This product is for research use only, not for human use. We do not sell to patients.
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Purity & Quality Control Documentation

Purity: ≥98%

Product Description

Zipalertinib (TAS6417; CLN-081; TAS-6417) is a novel, potent, orally bioavailable and selective covalent/irreversible EGFR inhibitor with anticancer activity. It acts by binding covalently to cysteine residue at 797 in the ATP-binding site of the EGFR hinge region. TAS6417 is an efficacious drug candidate for patients with NSCLC, with IC50 values ranging from 1.1-8.0 nM. TAS6417 inhibited EGFR with various exon 20 insertion mutations more potently than it inhibited the WT. TAS6417 inhibited EGFR phosphorylation and downstream molecules in NSCLC cell lines expressing EGFR exon 20 insertions, resulting in caspase activation. These characteristics led to marked tumor regression in vivo in both a genetically engineered model and in a patient-derived xenograft model. Furthermore, TAS6417 provided a survival benefit with good tolerability in a lung orthotopic implantation mouse model.

Biological Activity I Assay Protocols (From Reference)
ln Vitro
In NSCLC cell lines containing EGFR exon 20 insertions, zipalertinib (TAS6417) suppresses EGFR phosphorylation and downstream molecules, resulting in caspase activation [1]. Targeting the most prevalent EGFR (exon 19 deletion and L858R), zipalertinib (TAS6417) works best against cells with the EGFR-T790M (1/2 generation TKI mutations) mutation [2]. Recombinant EGFR cysteine residue 797 is covalently modified by zipalertinib (TAS6417). Cell growth is inhibited by zipalertinib (TAS6417), which blocks the transmission of the EGFR signal. In intermittently driven NSCLC cells, EGFR exon 20 insertion causes cell abnormalities as well [1]. In EGFR-tagged NSCLC cell lines, zipalertinib (TAS6417) (0–10 μM) suppresses both EGFR signaling and cell growth, regardless of whether the prevalent mutation T790M is present or not [2].
ln Vivo
In an EGFR exon 20 insertion-driven tumor model, continuous tumor regression is produced in vivo by zipalertinib (TAS6417) (10–200 mg/kg). In NCI-H23 or NCI-H460 cells, TAS6417 inhibits bright EGFR in tumors but not WT EGFR in skin tissue [1]. Zipalertinib (TAS6417) has no effect on EGFR non-proliferative proliferation. At 20 mg/kg, zipalertinib (TAS6417) can significantly lower pEGFR and totally inhibit tumor growth. as a result, pAKT and pERK decreased at one hour, inhibition of inhibition was observed at six hours, and EGFR, ATK, and ERK phosphorylation was restored at the 24-hour mark [1]. TAS6417 (zipalertinib) 100 and 200 mg/kg/day
Cell Assay
Apoptosis analysis [2]
Cell Types: PC 1]. -9, H1975, BID007, BID019, BEAS-2B cells.
Tested Concentrations: 0-10μM.
Incubation Duration: 24-48 hrs (hours).
Experimental Results: Cell apoptosis was induced by inhibiting mutant EGFR.
Animal Protocol
Animal/Disease Models: Mice implanted with NCI-H1975 EGFR D770_N771insSVD xenografts [1].
Doses: 50 and 100 mg/kg.
Route of Administration: po (po (oral gavage)) one time/day for 14 days.
Experimental Results: Demonstrated significant tumor growth inhibition with treatment/control (T/C) ratios of 51% and 19%, respectively.
References

[1]. TAS6417, A Novel EGFR Inhibitor Targeting Exon 20 Insertion Mutations. Mol Cancer Ther. 2018 Aug;17(8):1648-1658.

[2]. TAS6417/CLN-081 Is a Pan-Mutation-Selective EGFR Tyrosine Kinase Inhibitor with a Broad Spectrum of Preclinical Activity against Clinically Relevant EGFR Mutations. Mol Cancer Res. 2019 Nov;17(11):2233-2243.

Additional Infomation
Zipalertinib is an orally available selective inhibitor of a broad spectrum of epidermal growth factor receptor (EGFR) mutations, including EGFR exon 20 insertion mutations (EGFR Ex20ins; Ex20ins mutations), with potential antineoplastic activity. CLN-081 is also active against other EGFR mutations including exon 19 deletions (exon19del), L858R, and T790M, as well as the less common G719X, L861Q and S768I mutations. Upon administration, zipalertinib specifically and covalently binds to and inhibits a variety of EGFR mutations, with particularly high selectivity against EGFR Ex20ins, which prevents EGFR mutant-mediated signaling and leads to cell death in EGFR mutant-expressing tumor cells. Compared to some other EGFR inhibitors, CLN-081 may have therapeutic benefits in tumors with EGFR Ex20ins, as most EGFR mutant-selective inhibitors are not active against EGFR Ex20ins. This agent shows minimal activity against wild-type EGFR (wt EGFR), and does not cause dose-limiting toxicities that occur during the use of non-selective EGFR inhibitors, which also inhibit wt EGFR. EGFR, a receptor tyrosine kinase mutated in many tumor cell types, plays a key role in tumor cell proliferation and tumor vascularization.
These protocols are for reference only. InvivoChem does not independently validate these methods.
Physicochemical Properties
Molecular Formula
C23H20N6O
Molecular Weight
396.4445
Exact Mass
396.17
Elemental Analysis
C, 69.68; H, 5.09; N, 21.20; O, 4.04
CAS #
1661854-97-2
PubChem CID
117918742
Appearance
White to yellow solid powder
LogP
2.3
Hydrogen Bond Donor Count
2
Hydrogen Bond Acceptor Count
5
Rotatable Bond Count
3
Heavy Atom Count
30
Complexity
710
Defined Atom Stereocenter Count
1
SMILES
CC1=C[C@@H](CN2C1=C(C3=C(N=CN=C32)N)C4=CC5=CC=CC=C5N=C4)NC(=O)C=C
InChi Key
MKCYPWYURWOKST-INIZCTEOSA-N
InChi Code
InChI=1S/C23H20N6O/c1-3-18(30)28-16-8-13(2)21-19(15-9-14-6-4-5-7-17(14)25-10-15)20-22(24)26-12-27-23(20)29(21)11-16/h3-10,12,16H,1,11H2,2H3,(H,28,30)(H2,24,26,27)/t16-/m0/s1
Chemical Name
(S)-N-(4-amino-6-methyl-5-(quinolin-3-yl)-8,9-dihydropyrimido[5,4-b]indolizin-8-yl)acrylamide
Synonyms
Zipalertinib; TAS-6417; CLN-081; TAS6417; CLN081; TAS 6417;
HS Tariff Code
2934.99.9001
Storage

Powder      -20°C    3 years

                     4°C     2 years

In solvent   -80°C    6 months

                  -20°C    1 month

Note: (1). This product requires protection from light (avoid light exposure) during transportation and storage.  (2). Please store this product in a sealed and protected environment (e.g. under nitrogen), avoid exposure to moisture.
Shipping Condition
Room temperature (This product is stable at ambient temperature for a few days during ordinary shipping and time spent in Customs)
Solubility Data
Solubility (In Vitro)
DMSO : ~22.73 mg/mL (~57.34 mM)
Solubility (In Vivo)
Solubility in Formulation 1: ≥ 2.08 mg/mL (5.25 mM) (saturation unknown) in 10% DMSO + 40% PEG300 + 5% Tween80 + 45% Saline (add these co-solvents sequentially from left to right, and one by one), clear solution.
For example, if 1 mL of working solution is to be prepared, you can add 100 μL of 20.8 mg/mL clear DMSO stock solution to 400 μL PEG300 and mix evenly; then add 50 μL Tween-80 to the above solution and mix evenly; then add 450 μL normal saline to adjust the volume to 1 mL.
Preparation of saline: Dissolve 0.9 g of sodium chloride in 100 mL ddH₂ O to obtain a clear solution.

Solubility in Formulation 2: ≥ 2.08 mg/mL (5.25 mM) (saturation unknown) in 10% DMSO + 90% (20% SBE-β-CD in Saline) (add these co-solvents sequentially from left to right, and one by one), clear solution.
For example, if 1 mL of working solution is to be prepared, you can add 100 μL of 20.8 mg/mL clear DMSO stock solution to 900 μL of 20% SBE-β-CD physiological saline solution and mix evenly.
Preparation of 20% SBE-β-CD in Saline (4°C,1 week): Dissolve 2 g SBE-β-CD in 10 mL saline to obtain a clear solution.

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Solubility in Formulation 3: ≥ 2.08 mg/mL (5.25 mM) (saturation unknown) in 10% DMSO + 90% Corn Oil (add these co-solvents sequentially from left to right, and one by one), clear solution.
For example, if 1 mL of working solution is to be prepared, you can add 100 μL of 20.8 mg/mL clear DMSO stock solution to 900 μL of corn oil and mix evenly.


 (Please use freshly prepared in vivo formulations for optimal results.)
Preparing Stock Solutions 1 mg 5 mg 10 mg
1 mM 2.5224 mL 12.6122 mL 25.2245 mL
5 mM 0.5045 mL 2.5224 mL 5.0449 mL
10 mM 0.2522 mL 1.2612 mL 2.5224 mL

*Note: Please select an appropriate solvent for the preparation of stock solution based on your experiment needs. For most products, DMSO can be used for preparing stock solutions (e.g. 5 mM, 10 mM, or 20 mM concentration); some products with high aqueous solubility may be dissolved in water directly. Solubility information is available at the above Solubility Data section. Once the stock solution is prepared, aliquot it to routine usage volumes and store at -20°C or -80°C. Avoid repeated freeze and thaw cycles.

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Note: Chemical formula is case sensitive: C12H18N3O4  c12h18n3o4
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In vivo Formulation Calculator (Clear solution)
Step 1: Enter information below (Recommended: An additional animal to make allowance for loss during the experiment)
Step 2: Enter in vivo formulation (This is only a calculator, not the exact formulation for a specific product. Please contact us first if there is no in vivo formulation in the solubility section.)
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Calculation results

Working concentration mg/mL;

Method for preparing DMSO stock solution mg drug pre-dissolved in μL DMSO (stock solution concentration mg/mL). Please contact us first if the concentration exceeds the DMSO solubility of the batch of drug.

Method for preparing in vivo formulation:Take μL DMSO stock solution, next add μL PEG300, mix and clarify, next addμL Tween 80, mix and clarify, next add μL ddH2O,mix and clarify.

(1) Please be sure that the solution is clear before the addition of next solvent. Dissolution methods like vortex, ultrasound or warming and heat may be used to aid dissolving.
             (2) Be sure to add the solvent(s) in order.

Clinical Trial Information
NCT Number Recruitment interventions Conditions Sponsor/Collaborators Start Date Phases
NCT05973773 RECRUITING Drug:TAS6417 Advanced or Metastatic NSCLS With
Exon 20 Insertion Mutation
Taiho Oncology, Inc. 2023-06-30 Phase 3
NCT05967689 RECRUITING Drug: TAS6417 Advanced or Metastatic NSCLC
Harboring Epidermal Growth Factor
Receptor(EGFR) Exon 20
Insertion(ex20ins) Mutations
Taiho Oncology, Inc. 2023-07-27 Phase 2
NCT04036682 RECRUITING Drug: CLN-081 EGFR Exon 20 Mutation
Non Small Cell Lung Cancer
Cullinan Therapeutics Inc. 2019-10-31 Phase 1
Phase 2
Biological Data
  • TAS6417, an EGFR-TKI targeting exon 20 insertion mutations. A, Chemical structure of TAS6417, which contains 6-methyl-8,9-dihydropyrimido[5,4-b]indolizine as its core unit. B, MSE spectrum confirmation for protease-digested peptide [LLGICLTSTVQLITQLMPFGCLL] with TAS6417. TAS6417-treated EGFR D770_N771insNPG was digested with protease and analyzed by LC-MSE peptide mapping. Identification of TAS6417 attached peptide was confirmed using the MSE fragmentation data. Fragment ions containing C797 (red) were shifted corresponding to the molecular weight of TAS6417, suggesting that TAS6417 covalently bound to EGFR D770_N771insNPG. C, Inhibitory activity of TAS6417, afatinib, and erlotinib on cell proliferation in a panel of Ba/F3 cells engineered to express human EGFRs. The cells were cultured with the compounds for 72 hours in mouse IL3-free conditions. Ba/F3 EGFR WT cells were stimulated with 50 ng/mL EGF during compound treatment. IC50 values were determined with the CellTiter-Glo assay. D, Exon 20 insertion mutation selectivity of TAS6417, afatinib, and erlotinib. Using the IC50 values shown in C, the WT/mut ratio was determined. Mol Cancer Ther . 2018 Aug;17(8):1648-1658.
  • Inhibition of EGFR signaling by TAS6417 in NSCLC cell lines with EGFR exon 20 insertion mutations. A and B, Effect of TAS6417 on EGFR signaling in LXF 2478L cells (A) and NCI-H1975 EGFR D770_N771insSVD cells (B). The cells were cultured with TAS6417 or afatinib and harvested 6 and 24 hours after treatment. Phosphorylation of EGFR-Tyr1068, AKT-Ser473, and ERK1/2-Thr202/Tyr204 and expression of BIM and cleaved PARP were determined using immunoblotting analysis. C and D, Caspase3/7 activation by TAS6417 in LXF 2478L cells (C) and NCI-H1975 EGFR D770_N771insSVD cells (D). The cells were treated with TAS6417 or afatinib for 24 hours. Caspase-3/7 activation relative to that of the DMSO control was determined using the Caspase-Glo 3/7 and CellTiter-Glo assays. *, P < 0.05; **, P < 0.01; ***, P < 0.001. Mol Cancer Ther . 2018 Aug;17(8):1648-1658.
  • In vivo antitumor efficacy of once-daily oral administration of TAS6417. A, Inhibition of tumor growth in mice bearing NCI-H1975 EGFR D770_N771insSVD xenografts over 14-day treatment with TAS6417 and afatinib. B, Inhibition of tumor growth in rats bearing NCI-H1975 EGFR D770_N771inSVD xenografts over 14-day treatment with TAS6417. C, Inhibition of tumor growth in mice bearing NIH/3T3 EGFR H773_V774insNPH allografts over 10-day treatment with TAS6417 and afatinib. D, Inhibition of tumor growth in mice bearing lung cancer PDX with EGFR H773_N774insNPH (LU0387) over 28-day treatment with TAS6417 and afatinib, followed by 14-day observation period. E, Inhibition of tumor growth in mice bearing lung cancer PDX with EGFR V769_D770insASV over 28-day treatment with TAS6417 and afatinib, followed by 14-day observation period. F, Plasma concentration profiles over time on Day 14 in nude mice and nude rats. Control group was administered the vehicle for TAS6417. Data are presented as mean tumor volume ± SEM or mean plasma concentration ± SD in each group. Mol Cancer Ther . 2018 Aug;17(8):1648-1658.
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