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RO-5963

Alias: RO-5963; RO5963; RO 5963
Cat No.:V6157 Purity: ≥98%
RO-5963 is a dual (bifunctional) inhibitor of p53-MDM2 and p53-MDMX interactions, with IC50s of about 17 nM and 24 nM, respectively.
RO-5963
RO-5963 Chemical Structure CAS No.: 1416663-77-8
Product category: New1
This product is for research use only, not for human use. We do not sell to patients.
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Product Description
RO-5963 is a dual (bifunctional) inhibitor of p53-MDM2 and p53-MDMX interactions, with IC50s of about 17 nM and 24 nM, respectively.
RO-5963 is a dual small-molecule inhibitor that simultaneously targets the interactions of p53 with both MDM2 and MDMX. It was developed as a follow-up to the potent but poorly soluble dual inhibitor RO-2443, with chemical modifications that substantially improved solubility and cellular activity. With a molecular weight of 518.9 g/mol and CAS number 1416663-77-8, RO-5963 is a first-in-class compound capable of inducing dimerization of MDM2 and MDMX through binding to their N-terminal p53-binding domains, a unique mechanism of action among p53 pathway activators .
Biological Activity I Assay Protocols (From Reference)
Targets
MDM2 and MDMX (dual inhibitor). IC50 values: p53-MDM2 binding inhibition ~17 nM (comparable to nutlin-3a at ~19 nM); p53-MDMX binding inhibition ~24 nM (approximately 400-fold more potent than nutlin-3a, which has IC50 ~9 μM) [1].
ln Vitro
In Vitro: RO-5963 (10 or 20 μM) penetrated MDMX-overexpressing MCF7 breast cancer cells, stabilized p53, and elevated protein levels of p53 transcriptional targets p21 and MDM2 in a dose-dependent manner. The increase in p21 and MDM2 protein levels was attributable to induction of their transcription, as revealed by dose-dependent increases in their mRNA and of two other p53 transcriptional targets, MIC-1 and BAX, but not MDMX (which is not under p53 control) [1].
Immunoprecipitation experiments in MCF7 cells showed that RO-5963 (10 or 20 μM for 4 h) disrupted both p53-MDM2 and p53-MDMX interactions. At 20 μM, RO-5963 was equivalent to 10 μM nutlin-3a in inhibiting p53-MDM2 binding and effectively blocked p53-MDMX binding at both 10 and 20 μM. Nutlin-3a showed no effect on p53-MDMX interaction. A notable increase in MDMX and MDM2 proteins pulled down by immunoprecipitated MDMX was consistent with RO-5963-induced formation of MDMX/MDMX and MDMX/MDM2 dimers [1].
In cell viability assays across three wild-type p53 cancer cell lines (MCF7, HCT116, RKO), RO-5963 showed EC50 values approximately 10-fold lower than in mutant p53 cell lines (SW480, MDA-MB-435). RO-5963 did not increase p53 Ser15 phosphorylation, indicating that p53 activation was not caused by genotoxic stress [1].
In G401 and H460 cells, RO-5963 dose-dependently increased p53, MDM2, and p21 levels while only slightly reducing MDMX. Importantly, RO-5963 protected MDMX from nutlin-induced degradation by MDM2. In a panel of 11 wild-type p53 solid tumor cell lines (breast, prostate, colon, lung, kidney, osteosarcoma, melanoma), RO-5963 effectively activated p53 and elevated p21 and MDM2 levels [1].
In cell cycle analysis, RO-5963 potently arrested exponentially growing cancer cells in G1 and G2 phases, effectively depleting the S phase compartment. In apoptosis assays using SJSA-V (parental) and SJSA-X (MDMX-overexpressing) cells, RO-5963 showed strong Annexin V signal in both lines, while nutlin-3a was practically inactive in SJSA-X. Apoptotic activity of RO-5963 was dose-dependent and enhanced when combined with nutlin-3a. Western blotting of SJSA-X lysates showed that 20 μM RO-5963 induced p53 accumulation comparable to 10 μM nutlin-3a, but p21 and MDM2 levels were higher with RO-5963, indicating enhanced transcriptional activity due to dual inhibition [1].
In breast cancer cell lines with varying MDMX/MDM2 ratios (MCF7 high MDMX, ZR75-30 moderate MDMX, ZR75-1 low MDMX), RO-5963 (20 μM) showed much higher apoptotic activity than nutlin-3a in MCF7 and ZR75-30 cells. In a panel of nine wild-type p53 cancer cell lines, RO-5963 showed better apoptotic activity than nutlin-3a in 4/9 lines (H460, RKO, LS174T, AGS), which correlated with relatively high MDMX levels [1].
In MCF7 and ZR75-30 cell lines, RO-5963 (10–20 μM; 48 hours) exhibits more apoptotic activity than Nutlin [1]. Effectively activating p53 and raising p21 and MDM2 levels, RO-5963 (10 μM, 24 hours) [1].
Enzyme Assay
Enzyme Assay: MDM2-p53 and MDMX-p53 binding was assessed by time-resolved fluorescence resonance energy transfer (TR-FRET) binding assays and fluorescence quenching assays. For RO-2443 (the parent compound from which RO-5963 was derived), isothermal titration calorimetry (ITC) was performed, revealing a binding constant (Kd = 78 nM) dominated by the entropy component, consistent with primarily hydrophobic binding interactions. Nuclear magnetic resonance (NMR) spectroscopy using ¹⁵N-labeled humanized-zebrafish MDMX showed that RO-2443 binds to the p53 pocket, with substantial upfield shift for Y63 consistent with shielding by an aromatic group. Size-exclusion chromatography with static light scattering (SEC-SLS) showed that RO-2443 induced MDMX dimer formation, with the complex mass calculated as 24.1 kDa (theoretical monomer 12.3 kDa) [1].
Crystal structures of MDMX bound to RO-2443 (1.8 Å resolution) revealed a dimer arrangement with two inhibitor molecules at the core, each interacting with both protein monomers. The indolyl-hydantoin moiety occupies the Phe pocket of one monomer, while the di-fluoro-phenyl group reaches into the Trp pocket of the other monomer, with extensive aromatic stacking interactions (3.3-3.7 Å) between the two indolyl-hydantoin groups [1].
Cell Assay
Cell Assay: Cell proliferation/viability was evaluated by methyl-thiazolyl-tetrazolium (MTT) and CellTiter-Glo assays. For dose-response curves, cells were incubated with serial dilutions of RO-5963 for 5 days, and viability was expressed as percentage of controls ± SD [1].
For Western blotting, log-phase cells were incubated with RO-5963 for 24 h (or as indicated), cell lysates were prepared, and protein levels of p53, p21, MDM2, MDMX, and phosphorylated p53 (Ser15) were determined using specific antibodies. For combination studies, cells were incubated with RO-5963 with or without 10 μM nutlin-3a [1].
For immunoprecipitation, MCF7 cells were incubated with 10 μM nutlin-3a or 10/20 μM RO-5963 for 4 h. Protein complexes were immunoprecipitated with anti-MDMX or anti-p53 antibodies, and levels of p53, MDM2, and MDMX were determined by Western blotting [1].
For apoptosis assays, cells were incubated with compounds for 48 h, and the percentage of apoptotic cells was determined by Annexin V assay. For cell cycle analysis, exponentially growing cells were treated with compounds, and cell cycle distribution was analyzed by flow cytometry [1].
For gene expression analysis (qPCR), MCF7 cells were treated with RO-5963 for 24 h, RNA was extracted, and mRNA levels of p53 target genes (p21, MDM2, MIC-1, BAX) and MDMX were quantified by real-time PCR [1].
Apoptosis analysis [1]
Cell Types: ZR75-30, MCF7 Cell
Tested Concentrations: 10, 20 μM
Incubation Duration: 48 hrs (hours)
Experimental Results: Strong display of apoptotic activity.

Western Blot Analysis[1]
Cell Types: LNCap, U2OS, RKO, A489, 22Rv1, HCT116, H460, LOX, MCF7, A549, G401 Cell
Tested Concentrations: 10 μM
Incubation Duration: 24 hrs (hours)
Experimental Results: Effectively activates p53 and increases p21 and MDM2 level.
ADME/Pharmacokinetics
RO-5963 was developed as a close analog of RO-2443 with slightly increased potency but substantially improved solubility. RO-2443 showed potent MDM2/MDMX inhibitory activity in vitro but had poor water solubility that did not allow for meaningful assessment of its cellular activity. No specific pharmacokinetic data (absorption, distribution, metabolism, excretion, half-life, oral bioavailability) for RO-5963 were reported [1].
References

[1]. Activation of the p53 pathway by small-molecule-induced MDM2 and MDMX dimerization. Proc Natl Acad Sci U S A. 2012 Jul 17;109(29):11788-93.

Additional Infomation
RO-5963 is a dual MDM2/MDMX inhibitor derived from the indolyl-hydantoin class of compounds identified through high-throughput screening. Unlike RO-2443 (the parent compound with poor solubility), RO-5963 has substantially improved solubility, enabling cellular activity assessment. The compound induces dimerization of MDM2 and MDMX through binding to their N-terminal p53-binding domains, a mechanism not previously observed for small-molecule inhibitors. The crystal structure of MDMX bound to the parent compound RO-2443 revealed that two inhibitor molecules mediate dimer formation, with each inhibitor binding to both protein monomers in a "handshake" configuration. RO-5963 overcomes the resistance of MDMX-overexpressing cancer cells to selective MDM2 antagonists such as nutlin-3a, making it a promising lead for cancers with MDMX amplification (approximately 19% of breast, colon, and lung cancers). The dual inhibitor restores p53 transcriptional activity and induces apoptosis in MDMX-overexpressing cell lines where nutlin-3a is ineffective [1].
These protocols are for reference only. InvivoChem does not independently validate these methods.
Physicochemical Properties
Molecular Formula
C24H21CLF2N4O5
Molecular Weight
518.897151708603
Exact Mass
518.116
Elemental Analysis
C, 55.55; H, 4.08; Cl, 6.83; F, 7.32; N, 10.80; O, 15.42
CAS #
1416663-77-8
PubChem CID
136209736
Appearance
Light yellow to yellow solid powder
LogP
1.4
Hydrogen Bond Donor Count
5
Hydrogen Bond Acceptor Count
8
Rotatable Bond Count
7
Heavy Atom Count
36
Complexity
959
Defined Atom Stereocenter Count
0
SMILES
CC1=C(C=CC\2=C1N=C/C2=C\C3=C(N(C(=O)N3)C(C4=CC(=C(C=C4)F)F)C(=O)NC(CO)CO)O)Cl
InChi Key
IFYMUYSGUSHEPI-NTUHNPAUSA-N
InChi Code
InChI=1S/C24H21ClF2N4O5/c1-11-16(25)4-3-15-13(8-28-20(11)15)7-19-23(35)31(24(36)30-19)21(22(34)29-14(9-32)10-33)12-2-5-17(26)18(27)6-12/h2-8,14,21,32-33,35H,9-10H2,1H3,(H,29,34)(H,30,36)/b13-7+
Chemical Name
2-[5-[(Z)-(6-chloro-7-methylindol-3-ylidene)methyl]-4-hydroxy-2-oxo-1H-imidazol-3-yl]-2-(3,4-difluorophenyl)-N-(1,3-dihydroxypropan-2-yl)acetamide
Synonyms
RO-5963; RO5963; RO 5963
HS Tariff Code
2934.99.9001
Storage

Powder      -20°C    3 years

                     4°C     2 years

In solvent   -80°C    6 months

                  -20°C    1 month

Shipping Condition
Room temperature (This product is stable at ambient temperature for a few days during ordinary shipping and time spent in Customs)
Solubility Data
Solubility (In Vitro)
DMSO : ~150 mg/mL (~289.07 mM)
Solubility (In Vivo)
Solubility in Formulation 1: ≥ 3.75 mg/mL (7.23 mM) (saturation unknown) in 10% DMSO + 40% PEG300 + 5% Tween80 + 45% Saline (add these co-solvents sequentially from left to right, and one by one), clear solution.
For example, if 1 mL of working solution is to be prepared, you can add 100 μL of 37.5 mg/mL clear DMSO stock solution to 400 μL PEG300 and mix evenly; then add 50 μL Tween-80 to the above solution and mix evenly; then add 450 μL normal saline to adjust the volume to 1 mL.
Preparation of saline: Dissolve 0.9 g of sodium chloride in 100 mL ddH₂ O to obtain a clear solution.

Solubility in Formulation 2: ≥ 3.75 mg/mL (7.23 mM) (saturation unknown) in 10% DMSO + 90% (20% SBE-β-CD in Saline) (add these co-solvents sequentially from left to right, and one by one), clear solution.
For example, if 1 mL of working solution is to be prepared, you can add 100 μL of 37.5 mg/mL clear DMSO stock solution to 900 μL of 20% SBE-β-CD physiological saline solution and mix evenly.
Preparation of 20% SBE-β-CD in Saline (4°C,1 week): Dissolve 2 g SBE-β-CD in 10 mL saline to obtain a clear solution.

 (Please use freshly prepared in vivo formulations for optimal results.)
Preparing Stock Solutions 1 mg 5 mg 10 mg
1 mM 1.9272 mL 9.6358 mL 19.2715 mL
5 mM 0.3854 mL 1.9272 mL 3.8543 mL
10 mM 0.1927 mL 0.9636 mL 1.9272 mL

*Note: Please select an appropriate solvent for the preparation of stock solution based on your experiment needs. For most products, DMSO can be used for preparing stock solutions (e.g. 5 mM, 10 mM, or 20 mM concentration); some products with high aqueous solubility may be dissolved in water directly. Solubility information is available at the above Solubility Data section. Once the stock solution is prepared, aliquot it to routine usage volumes and store at -20°C or -80°C. Avoid repeated freeze and thaw cycles.

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Working concentration mg/mL;

Method for preparing DMSO stock solution mg drug pre-dissolved in μL DMSO (stock solution concentration mg/mL). Please contact us first if the concentration exceeds the DMSO solubility of the batch of drug.

Method for preparing in vivo formulation:Take μL DMSO stock solution, next add μL PEG300, mix and clarify, next addμL Tween 80, mix and clarify, next add μL ddH2O,mix and clarify.

(1) Please be sure that the solution is clear before the addition of next solvent. Dissolution methods like vortex, ultrasound or warming and heat may be used to aid dissolving.
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Biological Data
  • RO-5963 stabilizes p53 and activates the p53 pathway in cancer cells. (A) Chemical structure and in vitro inhibitory activity of RO-5963 and the MDM2 antagonist, nutlin-3a. (B) RO-5963 stabilizes p53 and elevates protein levels of p53 targets, p21 and MDM2. Log-phase MCF7 cells were incubated with RO-5953 for 24 h, and cell lysates were analyzed by Western blotting. (C) Dose-dependent induction of p53 target genes in MCF7 cells 24 h post RO-5963 addition. (D) RO-5963 inhibits p53-MDM2 and p53-MDMX binding in cancer cells. MCF7 cells were incubated with 10 μM nutlin-3a and 10 or 20 μM RO-5963 for 4 h, and the levels of p53, MDM2, and MDMX were determined in protein complexes immunoprecipitated with anti-MDMX or anti-p53 antibodies by Western blotting.[1].Graves B, et al. Activation of the p53 pathway by small-molecule-induced MDM2 and MDMX dimerization. Proc Natl Acad Sci U S A. 2012 Jul 17;109(29):11788-93.
  • RO-5963 activates p53 signaling in diverse cellular context by a nongenotoxic mechanism. (A) Antitumor activity of RO-5963 depends on the p53 status. Viability of three wild-type p53 (MCF7, HCT116, RKO) and two mutant p53 (SW480, MDA-MB-435) cancer cell lines was determined by the CellTiter-Glo assay after 5 d of incubation with RO-5963 and expressed as percentage of controls ± SD. (B) RO-5963 does not induce genotoxic response in cancer cells. Cells were incubated with 10 μM RO-5963 or 1 μM doxorubicin for 24 h, and the levels of total and Ser15-phosphorylated p53 were determined by Western blotting. (C) Binding of RO-5963 prevents MDM2-mediated degradation of MDMX. G401 and H460 cells were incubated with the indicated concentrations of RO-5963 with or without 10 μM nutlin-3a, and relative levels of p53, p21, MDM2, and MDMX were determined by Western blotting. Blots representative of three independent experiments are shown.[1].Graves B, et al. Activation of the p53 pathway by small-molecule-induced MDM2 and MDMX dimerization. Proc Natl Acad Sci U S A. 2012 Jul 17;109(29):11788-93.
  • Apoptotic activity of RO-5963 and MDMX status. (A) Breast cancer cells respond to RO-5963 depending on the levels of MDM2 and MDMX. Three cell lines with variable ratios of MDMX/MDM2 proteins were exposed to nutlin-3a (10 μM) and RO-5963 (10 or 20 μM) for 48 h, and the percentage of apoptotic cells (± SD) was determined by the Annexin V assay. (B) Cytotoxicity of RO-5963 on MCF7 cells. Phase-contrast images were taken 48 h after addition of 20 μM RO5963. (C) Relative protein levels of MDM2 and MDMX in a panel of solid tumor cell lines. Cells lines at subconfluent stage of growth were analyzed for protein levels by Western blotting. (D) Apoptotic response to RO-5963 and nutlin in a panel of cancer cell lines with wild-type and mutant p53. Log-phase cells were incubated with nutlin-3a and RO-5963 for 48 h and analyzed for apoptosis as in A. Two mutant p53 cell lines, MDA-MB-435 and SW480, were included as controls.[1].Graves B, et al. Activation of the p53 pathway by small-molecule-induced MDM2 and MDMX dimerization. Proc Natl Acad Sci U S A. 2012 Jul 17;109(29):11788-93.
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