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Perforin-IN-2

Cat No.:V85433 Purity: ≥98%
Perforin-IN-2
Perforin-IN-2 Chemical Structure CAS No.: 1567836-70-7
Product category: Others 14
This product is for research use only, not for human use. We do not sell to patients.
Size Price Stock Qty
5mg
10mg
Other Sizes
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Product Description
Perforin-IN-2 is a benzenesulfonamide perforin inhibitor that can reduce transplant rejection during allogeneic bone marrow/stem cell transplantation. The binding rate of Perforin-IN-2 to plasma proteins is 99.8%. Perforin-IN-2 requires a higher concentration (>900 μM) to achieve the best perforin inhibition effect in vivo. Perforin-IN-2 can effectively inhibit the lytic activity of recombinant perforin on Jurkat T (IC50=6.65 μM) leukemia cells, and can also inhibit the death of K562 leukemia target cells.
Perforin-IN-2 (CAS 1567836-70-7) is a benzosulfonamide-based small molecule developed as a selective inhibitor of the pore-forming protein perforin, which is a key effector molecule released by cytotoxic T lymphocytes and natural killer cells during immune responses. This compound is designed to mitigate transplant rejection by inhibiting perforin-mediated cytolysis of target cells in allogeneic bone marrow and stem cell transplantation. With a molecular weight of 506.55 g/mol and a molecular formula of C24H18N4O5S2, Perforin-IN-2 represents a novel class of immunosuppressive agents that specifically target the granule exocytosis pathway of cell-mediated cytotoxicity. The compound is intended for research use only and has been characterized in preclinical studies for its potential to prevent graft-versus-host disease and other transplant-related complications.
Biological Activity I Assay Protocols (From Reference)
Targets
Perforin-IN-2 directly targets the pore-forming protein perforin, which is a key effector molecule stored in the cytotoxic granules of CD8+ T lymphocytes and natural killer cells. Perforin plays an essential role in the immune system by forming transmembrane pores in the plasma membrane of target cells, leading to osmotic lysis and cell death. By inhibiting perforin, Perforin-IN-2 blocks the cytolytic activity of these immune cells without affecting other immune functions, thereby providing a targeted approach to immunosuppression in the context of transplantation.
ln Vitro
Perforin-IN-2 effectively inhibits the lytic activity of recombinant perforin on Jurkat T leukemia cells with an IC50 of 6.65 μM. It also prevents the death of K562 leukemia target cells, demonstrating its ability to block perforin-mediated cytotoxicity in a cellular context. The compound binds to plasma proteins with an exceptionally high binding rate of 99.8%, which significantly influences its distribution and bioavailability. In enzymatic assays, Perforin-IN-2 shows concentration-dependent inhibition of perforin pore-forming activity, validating its mechanism of action as a direct perforin inhibitor.
ln Vivo
In vivo, Perforin-IN-2 requires a relatively high concentration (>900 μM) to achieve optimal perforin inhibition, indicating that significant compound accumulation at the target site may be necessary for therapeutic efficacy. The compound has been evaluated in preclinical models of allogeneic transplantation, where it alleviates transplant rejection by reducing perforin-mediated killing of donor cells. Its high plasma protein binding (99.8%) suggests that the free, active concentration of the compound in circulation is extremely low, which may necessitate high total drug concentrations to achieve sufficient target engagement in vivo.
Enzyme Assay
Non-cell-based assays for Perforin-IN-2 typically involve biochemical binding and inhibition studies using purified recombinant perforin protein. A standard protocol includes incubating recombinant perforin with various concentrations of the compound (ranging from 0.1 to 100 μM) in a suitable buffer system, followed by the addition of a fluorogenic or colorimetric substrate to measure residual perforin activity. The inhibition of perforin-mediated liposome disruption or erythrocyte lysis can be quantified spectrophotometrically to determine the IC50 value. Surface plasmon resonance (SPR) or isothermal titration calorimetry (ITC) may be employed to directly measure the binding affinity (Kd) between Perforin-IN-2 and perforin, providing mechanistic insights into the inhibition kinetics.
Cell Assay
Cell-based assays for Perforin-IN-2 typically utilize perforin-sensitive target cell lines such as Jurkat T leukemia cells or K562 erythroleukemia cells. A representative protocol involves culturing target cells in appropriate medium, labeling them with a fluorescent dye such as calcein-AM or using a chromium-51 release assay, and co-incubating them with recombinant perforin or effector cells in the presence of varying concentrations of Perforin-IN-2 (typically 0.1–100 μM). After incubation at 37°C for 2–4 hours, cell lysis is quantified by measuring the release of fluorescent or radioactive labels into the supernatant. The percentage of inhibition is calculated relative to control wells without compound, and dose-response curves are generated to determine the IC50 for cytolysis inhibition.
Animal Protocol
In vivo animal studies with Perforin-IN-2 are conducted in murine models of allogeneic bone marrow or stem cell transplantation. A typical protocol involves conditioning recipient mice with irradiation or chemotherapy, followed by transplantation of donor bone marrow cells. Perforin-IN-2 is administered via intraperitoneal or oral routes at doses ranging from 10 to 100 mg/kg, starting before transplantation and continuing for several days or weeks post-transplant. Graft survival, chimerism levels, and signs of graft-versus-host disease are monitored. Pharmacodynamic endpoints include assessment of perforin activity in isolated cytotoxic lymphocytes and histopathological examination of target organs such as skin, liver, and intestine.
ADME/Pharmacokinetics
Detailed pharmacokinetic parameters of Perforin-IN-2 have been characterized in preclinical studies published in ACS Pharmacology & Translational Science. The compound exhibits an exceptionally high plasma protein binding rate of 99.8%, resulting in a very low fraction of unbound drug available for tissue distribution and target engagement. This pharmacokinetic property necessitates high total drug concentrations (>900 μM) to achieve optimal perforin inhibition in vivo. The compound is typically administered via injection in research settings, with bioavailability and half-life data available from the primary literature. The high protein binding may also influence the compound's volume of distribution and clearance profile.
Toxicity/Toxicokinetics
Toxicological data for Perforin-IN-2 are derived from preclinical studies and indicate that the compound is intended for research use only and is not approved for human therapeutic applications. The high concentration required for in vivo efficacy (>900 μM) raises potential concerns about the therapeutic window and off-target effects. Standard safety assessments would include cytotoxicity screening, hERG channel inhibition testing, and preliminary toxicology studies in animal models to evaluate maximum tolerated dose and target organ toxicity. As a research compound, appropriate safety precautions should be followed during handling, including the use of personal protective equipment and proper chemical hygiene practices.
References

[1].Preclinical Activity and Pharmacokinetic/Pharmacodynamic Relationship for a Series of Novel Benzenesulfonamide Perforin Inhibitors. ACS Pharmacol Transl Sci. 2022 May 31;5(6):429-439.

Additional Infomation
Perforin-IN-2 (Compound 1) is a first-in-class benzosulfonamide perforin inhibitor that has been validated in preclinical models of allogeneic transplantation. The compound is referenced in the primary literature, specifically in a study published in ACS Pharmacology & Translational Science (2022) that describes the preclinical activity and pharmacokinetic/pharmacodynamic relationship for a series of novel benzenesulfonamide perforin inhibitors. Perforin-IN-2 represents a promising tool compound for studying the role of perforin in immune-mediated diseases beyond transplantation, including autoimmune disorders and certain cancers where perforin-mediated cytotoxicity plays a pathogenic role. The compound is stored as a powder at -20°C for up to 3 years and is soluble in DMSO at 33.33 mg/mL.
These protocols are for reference only. InvivoChem does not independently validate these methods.
Physicochemical Properties
Exact Mass
506.072
CAS #
1567836-70-7
PubChem CID
73295278
Appearance
Light yellow to yellow solid powder
Hydrogen Bond Donor Count
1
Hydrogen Bond Acceptor Count
8
Rotatable Bond Count
5
Heavy Atom Count
35
Complexity
907
Defined Atom Stereocenter Count
0
SMILES
CN1CC2=C(C1=O)C=CC(=C2)C3=CC=C(S3)C4=CC(=CN=C4)NS(=O)(=O)C5=CC=CC=C5[N+](=O)[O-]
InChi Key
BIAQRTAXQYZHBE-UHFFFAOYSA-N
InChi Code
InChI=1S/C24H18N4O5S2/c1-27-14-17-10-15(6-7-19(17)24(27)29)21-8-9-22(34-21)16-11-18(13-25-12-16)26-35(32,33)23-5-3-2-4-20(23)28(30)31/h2-13,26H,14H2,1H3
Chemical Name
N-[5-[5-(2-methyl-1-oxo-3H-isoindol-5-yl)thiophen-2-yl]-3-pyridinyl]-2-nitrobenzenesulfonamide
HS Tariff Code
2934.99.9001
Storage

Powder      -20°C    3 years

                     4°C     2 years

In solvent   -80°C    6 months

                  -20°C    1 month

Shipping Condition
Room temperature (This product is stable at ambient temperature for a few days during ordinary shipping and time spent in Customs)
Solubility Data
Solubility (In Vitro)
DMSO :~33.33 mg/mL (~65.80 mM; with sonication (<80°C))
Solubility (In Vivo)
Solubility in Formulation 1: 2.5 mg/mL (4.94 mM) in 10% DMSO + 90% Corn Oil (add these co-solvents sequentially from left to right, and one by one),clear solution; with ultrasonication.
For example, if 1 mL of working solution is to be prepared,you can add 100 μL of 25.0 mg/mL clear DMSO stock solution and add it to 900 μL corn oil and mix well.

 (Please use freshly prepared in vivo formulations for optimal results.)
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Note: Chemical formula is case sensitive: C12H18N3O4  c12h18n3o4
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Working concentration mg/mL;

Method for preparing DMSO stock solution mg drug pre-dissolved in μL DMSO (stock solution concentration mg/mL). Please contact us first if the concentration exceeds the DMSO solubility of the batch of drug.

Method for preparing in vivo formulation:Take μL DMSO stock solution, next add μL PEG300, mix and clarify, next addμL Tween 80, mix and clarify, next add μL ddH2O,mix and clarify.

(1) Please be sure that the solution is clear before the addition of next solvent. Dissolution methods like vortex, ultrasound or warming and heat may be used to aid dissolving.
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