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Thalidomide-O-C2-acid

Cat No.:V82998 Purity: ≥98%
Thalidomide-O-C2-acid is a ligand (for E3 ligase )-linker conjugate composed of Thalidomide (ligand for E3 ligase cereblon/CRBN) and a linker.
Thalidomide-O-C2-acid
Thalidomide-O-C2-acid Chemical Structure CAS No.: 2369068-42-6
Product category: PROTAC Linkers
This product is for research use only, not for human use. We do not sell to patients.
Size Price Stock Qty
5mg
10mg
50mg
100mg
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Product Description
Thalidomide-O-C2-acid is a ligand (for E3 ligase )-linker conjugate composed of Thalidomide (ligand for E3 ligase cereblon/CRBN) and a linker.
Thalidomide-O-C2-acid is an E3 ligase ligand-linker conjugate designed for PROTAC technology, incorporating a cereblon (CRBN) ligand derived from Thalidomide and a C2 linker with a terminal carboxylic acid for conjugation to target protein ligands .
Biological Activity I Assay Protocols (From Reference)
Targets
Cereblon
Cereblon (CRBN), a component of the E3 ubiquitin ligase complex .
ln Vitro
One ligand is for an E3 ubiquitin ligase, and the other is for the target protein; these two ligands are joined by a linker to form PROTACs. The intracellular ubiquitin-proteasome system is utilized by PROTACs to specifically destroy target proteins[2].
As a PROTAC building block, it enables the formation of bifunctional molecules that simultaneously bind an E3 ligase and a target protein, leading to selective ubiquitination and subsequent proteasomal degradation of the target protein .
ln Vivo
No in vivo activity data available for this specific compound. As a chemical intermediate for PROTAC synthesis, its in vivo activity is dependent on the final PROTAC molecule it is incorporated into.
Enzyme Assay
Not applicable. As a ligand-linker conjugate, it is not typically tested directly in enzyme/receptor binding assays. Its functionality is validated post-conjugation into a complete PROTAC, which is then assessed for target binding.
Cell Assay
Not applicable. This compound is a synthetic intermediate used for conjugation; it is not tested in cell-based assays alone. Cellular activity is evaluated after it is incorporated into a full PROTAC molecule.
Animal Protocol
Not applicable. This compound itself is not administered in animal studies. In vivo studies are performed using the final PROTAC molecule synthesized with this building block.
ADME/Pharmacokinetics
Thalidomide-O-C2-acid has a molecular weight of 346.29 g/mol and a carboxylic acid group for conjugation. Standard storage is at -20degC in powder form, and in solvent at -80degC for up to one year .
Toxicity/Toxicokinetics
No toxicity data available for this specific compound. Toxicity profiling is typically conducted on the final PROTAC molecule, as the linker-ligand conjugate alone is an intermediate not intended for direct in vivo administration.
References

[1]. Cereblon-Based Small-Molecule Compounds to Control Neural Stem Cell Proliferation in Regenerative Medicine. Front Cell Dev Biol. 2021;9:629326. Published 2021 Mar 11.

[2]. PROTACs: An Emerging Therapeutic Modality in Precision Medicine. Cell Chem Biol. 2020;27(8):998-1008.

Additional Infomation
This compound is for research use only and not for clinical use. Its primary application is in the discovery and development of PROTACs for targeted protein degradation, particularly in oncology and neurodegenerative disease research . The mechanism involves recruiting CRBN to induce ubiquitination and degradation of disease-relevant proteins.
These protocols are for reference only. InvivoChem does not independently validate these methods.
Physicochemical Properties
Molecular Formula
C16H14N2O7
Molecular Weight
346.291564464569
Exact Mass
346.08
CAS #
2369068-42-6
PubChem CID
139370805
Appearance
White to off-white solid powder
LogP
-0.2
Hydrogen Bond Donor Count
2
Hydrogen Bond Acceptor Count
7
Rotatable Bond Count
5
Heavy Atom Count
25
Complexity
632
Defined Atom Stereocenter Count
0
SMILES
C1CC(=O)NC(=O)C1N2C(=O)C3=C(C2=O)C(=CC=C3)OCCC(=O)O
InChi Key
JDORXWYUBMQFIZ-UHFFFAOYSA-N
InChi Code
InChI=1S/C16H14N2O7/c19-11-5-4-9(14(22)17-11)18-15(23)8-2-1-3-10(13(8)16(18)24)25-7-6-12(20)21/h1-3,9H,4-7H2,(H,20,21)(H,17,19,22)
Chemical Name
3-[2-(2,6-dioxopiperidin-3-yl)-1,3-dioxoisoindol-4-yl]oxypropanoic acid
HS Tariff Code
2934.99.9001
Storage

Powder      -20°C    3 years

                     4°C     2 years

In solvent   -80°C    6 months

                  -20°C    1 month

Shipping Condition
Room temperature (This product is stable at ambient temperature for a few days during ordinary shipping and time spent in Customs)
Solubility Data
Solubility (In Vitro)
DMSO :~250 mg/mL (~721.94 mM)
Solubility (In Vivo)
Solubility in Formulation 1: ≥ 2.08 mg/mL (6.01 mM) (saturation unknown) in 10% DMSO + 40% PEG300 + 5% Tween80 + 45% Saline (add these co-solvents sequentially from left to right, and one by one), clear solution.
For example, if 1 mL of working solution is to be prepared, you can add 100 μL of 20.8 mg/mL clear DMSO stock solution to 400 μL PEG300 and mix evenly; then add 50 μL Tween-80 to the above solution and mix evenly; then add 450 μL normal saline to adjust the volume to 1 mL.
Preparation of saline: Dissolve 0.9 g of sodium chloride in 100 mL ddH₂ O to obtain a clear solution.

Solubility in Formulation 2: ≥ 2.08 mg/mL (6.01 mM) (saturation unknown) in 10% DMSO + 90% (20% SBE-β-CD in Saline) (add these co-solvents sequentially from left to right, and one by one), clear solution.
For example, if 1 mL of working solution is to be prepared, you can add 100 μL of 20.8 mg/mL clear DMSO stock solution to 900 μL of 20% SBE-β-CD physiological saline solution and mix evenly.
Preparation of 20% SBE-β-CD in Saline (4°C,1 week): Dissolve 2 g SBE-β-CD in 10 mL saline to obtain a clear solution.

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Solubility in Formulation 3: ≥ 2.08 mg/mL (6.01 mM) (saturation unknown) in 10% DMSO + 90% Corn Oil (add these co-solvents sequentially from left to right, and one by one), clear solution.
For example, if 1 mL of working solution is to be prepared, you can add 100 μL of 20.8 mg/mL clear DMSO stock solution to 900 μL of corn oil and mix evenly.


 (Please use freshly prepared in vivo formulations for optimal results.)
Preparing Stock Solutions 1 mg 5 mg 10 mg
1 mM 2.8878 mL 14.4388 mL 28.8775 mL
5 mM 0.5776 mL 2.8878 mL 5.7755 mL
10 mM 0.2888 mL 1.4439 mL 2.8878 mL

*Note: Please select an appropriate solvent for the preparation of stock solution based on your experiment needs. For most products, DMSO can be used for preparing stock solutions (e.g. 5 mM, 10 mM, or 20 mM concentration); some products with high aqueous solubility may be dissolved in water directly. Solubility information is available at the above Solubility Data section. Once the stock solution is prepared, aliquot it to routine usage volumes and store at -20°C or -80°C. Avoid repeated freeze and thaw cycles.

Calculator

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An example of molarity calculation using the molarity calculator is shown below:
What is the mass of compound required to make a 10 mM stock solution in 5 ml of DMSO given that the molecular weight of the compound is 350.26 g/mol?
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  • Enter 10 in the Concentration box and choose the correct unit (mM)
  • Enter 5 in the Volume box and choose the correct unit (mL)
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  • The answer of 17.513 mg appears in the Mass box. In a similar way, you may calculate the volume and concentration.

Dilution Calculator allows you to calculate how to dilute a stock solution of known concentrations. For example, you may Enter C1, C2 & V2 to calculate V1, as detailed below:

What volume of a given 10 mM stock solution is required to make 25 ml of a 25 μM solution?
Using the equation C1V1 = C2V2, where C1=10 mM, C2=25 μM, V2=25 ml and V1 is the unknown:
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  • Enter 25 into the Volume (End) box and choose the correct unit (mL)
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  • The answer of 62.5 μL (0.1 ml) appears in the Volume (Start) box
g/mol

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Note: Chemical formula is case sensitive: C12H18N3O4  c12h18n3o4
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Definitions of molecular mass, molecular weight, molar mass and molar weight:
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In vivo Formulation Calculator (Clear solution)
Step 1: Enter information below (Recommended: An additional animal to make allowance for loss during the experiment)
Step 2: Enter in vivo formulation (This is only a calculator, not the exact formulation for a specific product. Please contact us first if there is no in vivo formulation in the solubility section.)
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Calculation results

Working concentration mg/mL;

Method for preparing DMSO stock solution mg drug pre-dissolved in μL DMSO (stock solution concentration mg/mL). Please contact us first if the concentration exceeds the DMSO solubility of the batch of drug.

Method for preparing in vivo formulation:Take μL DMSO stock solution, next add μL PEG300, mix and clarify, next addμL Tween 80, mix and clarify, next add μL ddH2O,mix and clarify.

(1) Please be sure that the solution is clear before the addition of next solvent. Dissolution methods like vortex, ultrasound or warming and heat may be used to aid dissolving.
             (2) Be sure to add the solvent(s) in order.

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