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Lenalidomide-acetylene-C5-COOH (Cereblon ligand-linker Conjugate)

Cat No.:V82991 Purity: ≥98%
Lenalidomide-acetylene-C5-COOH (compound 43; Cereblon ligand-linker Conjugate) is a Lenalidomide-based Cereblon ligand that recruits CRBN protein.
Lenalidomide-acetylene-C5-COOH (Cereblon ligand-linker Conjugate)
Lenalidomide-acetylene-C5-COOH (Cereblon ligand-linker Conjugate) Chemical Structure CAS No.: 2429878-72-6
Product category: PROTAC Linkers
This product is for research use only, not for human use. We do not sell to patients.
Size Price Stock Qty
50mg
100mg
Other Sizes
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Product Description
Lenalidomide-acetylene-C5-COOH (compound 43; Cereblon ligand-linker Conjugate) is a Lenalidomide-based Cereblon ligand that recruits CRBN protein. It can be conjugated to the ligand of a target protein through a linker to form a PROTAC molecule. Lenalidomide-acetylene-C5-COOH is a reagent for click chemistry. It contains Alkyne groups and could undergo CuAAc (copper-catalyzed azide-alkyne cycloaddition reaction) with compounds bearing an Azide group.
Lenalidomide-acetylene-C5-COOH is a Lenalidomide-based cereblon ligand-linker conjugate that can be conjugated to a target protein ligand through a linker to form a PROTAC molecule. It contains an acetylene group for click chemistry applications.
Biological Activity I Assay Protocols (From Reference)
Targets
Cereblon
CRBN (cereblon), an E3 ubiquitin ligase.
ln Vitro
This conjugate binds to cereblon via its lenalidomide moiety, recruiting the E3 ubiquitin ligase complex for targeted protein degradation when the terminal carboxylic acid or the acetylene group is used to attach a target protein ligand.
ln Vivo
No specific in vivo activity has been reported for this conjugate alone; however, a related STAT3 PROTAC synthesized using similar conjugates achieved complete tumor regression in mouse models.
Enzyme Assay
N/A; as an E3 ligase ligand-linker conjugate, its cereblon-binding affinity is typically characterized using biophysical methods. The acetylene group enables copper-catalyzed azide-alkyne cycloaddition (CuAAc) reactions.
Cell Assay
N/A; this conjugate alone is not tested in cell-based assays but is incorporated into complete PROTACs. The related STAT3 PROTAC has been shown to degrade STAT3 and inhibit tumor cell proliferation in vitro.
Animal Protocol
N/A; no animal studies are performed with the ligand-linker conjugate alone. A STAT3 PROTAC developed from a similar lenalidomide-based conjugate demonstrated complete tumor regression in vivo.
ADME/Pharmacokinetics
This compound has a molecular weight of 382.41 and is typically stored as a powder at -20degC for up to 3 years or in solvent at -80degC for up to 6 months. The combination of acetylene and carboxylic acid provides versatile conjugation options.
Toxicity/Toxicokinetics
This product is for laboratory research use only and is not for human therapeutic or clinical applications. Standard safe handling practices for chemical reagents and click chemistry precursors should be observed.
References

[1]. A Potent and Selective Small-Molecule Degrader of STAT3 Achieves Complete Tumor Regression In Vivo. Cancer Cell. 2019 Nov 11;36(5):498-511.e17.

Additional Infomation
The acetylene group supports click-chemistry applications, and the COOH moiety provides coupling versatility. This compound has been studied for applications in treating hematologic malignancies, particularly multiple myeloma.
These protocols are for reference only. InvivoChem does not independently validate these methods.
Physicochemical Properties
Molecular Formula
C21H22N2O5
Molecular Weight
382.4098
Exact Mass
382.152
CAS #
2429878-72-6
PubChem CID
139600323
Appearance
Off-white to light yellow solid powder
LogP
1.8
Hydrogen Bond Donor Count
2
Hydrogen Bond Acceptor Count
5
Rotatable Bond Count
7
Heavy Atom Count
28
Complexity
719
Defined Atom Stereocenter Count
0
SMILES
C1CC(=O)NC(=O)C1N2CC3=C(C=CC=C3C2=O)C#CCCCCCC(=O)O
InChi Key
UYYFKFKQSNARRT-UHFFFAOYSA-N
InChi Code
InChI=1S/C21H22N2O5/c24-18-12-11-17(20(27)22-18)23-13-16-14(8-6-9-15(16)21(23)28)7-4-2-1-3-5-10-19(25)26/h6,8-9,17H,1-3,5,10-13H2,(H,25,26)(H,22,24,27)
Chemical Name
8-[2-(2,6-dioxopiperidin-3-yl)-1-oxo-3H-isoindol-4-yl]oct-7-ynoic acid
HS Tariff Code
2934.99.9001
Storage

Powder      -20°C    3 years

                     4°C     2 years

In solvent   -80°C    6 months

                  -20°C    1 month

Shipping Condition
Room temperature (This product is stable at ambient temperature for a few days during ordinary shipping and time spent in Customs)
Solubility Data
Solubility (In Vitro)
DMSO :~115 mg/mL (~300.72 mM)
Solubility (In Vivo)
Solubility in Formulation 1: 5 mg/mL (13.07 mM) in 10% DMSO + 90% (20% SBE-β-CD in Saline) (add these co-solvents sequentially from left to right, and one by one), suspension solution; with sonication.
For example, if 1 mL of working solution is to be prepared, you can add 100 μL of 50.0 mg/mL clear DMSO stock solution to 900 μL of 20% SBE-β-CD physiological saline solution and mix evenly.
Preparation of 20% SBE-β-CD in Saline (4°C,1 week): Dissolve 2 g SBE-β-CD in 10 mL saline to obtain a clear solution.

Solubility in Formulation 2: ≥ 5 mg/mL (13.07 mM) (saturation unknown) in 10% DMSO + 90% Corn Oil (add these co-solvents sequentially from left to right, and one by one), clear solution.
For example, if 1 mL of working solution is to be prepared, you can add 100 μL of 50.0 mg/mL clear DMSO stock solution to 900 μL of corn oil and mix evenly.

 (Please use freshly prepared in vivo formulations for optimal results.)
Preparing Stock Solutions 1 mg 5 mg 10 mg
1 mM 2.6150 mL 13.0750 mL 26.1499 mL
5 mM 0.5230 mL 2.6150 mL 5.2300 mL
10 mM 0.2615 mL 1.3075 mL 2.6150 mL

*Note: Please select an appropriate solvent for the preparation of stock solution based on your experiment needs. For most products, DMSO can be used for preparing stock solutions (e.g. 5 mM, 10 mM, or 20 mM concentration); some products with high aqueous solubility may be dissolved in water directly. Solubility information is available at the above Solubility Data section. Once the stock solution is prepared, aliquot it to routine usage volumes and store at -20°C or -80°C. Avoid repeated freeze and thaw cycles.

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Note: Chemical formula is case sensitive: C12H18N3O4  c12h18n3o4
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In vivo Formulation Calculator (Clear solution)
Step 1: Enter information below (Recommended: An additional animal to make allowance for loss during the experiment)
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Calculation results

Working concentration mg/mL;

Method for preparing DMSO stock solution mg drug pre-dissolved in μL DMSO (stock solution concentration mg/mL). Please contact us first if the concentration exceeds the DMSO solubility of the batch of drug.

Method for preparing in vivo formulation:Take μL DMSO stock solution, next add μL PEG300, mix and clarify, next addμL Tween 80, mix and clarify, next add μL ddH2O,mix and clarify.

(1) Please be sure that the solution is clear before the addition of next solvent. Dissolution methods like vortex, ultrasound or warming and heat may be used to aid dissolving.
             (2) Be sure to add the solvent(s) in order.

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