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Pomalidomide-PEG4-C2-NH2 hydrochloride

Cat No.:V82961 Purity: ≥98%
Pomalidomide-PEG4-C2-NH2 HCl is a synthetic E3 ligase (e.g. CRBN) ligand-linker conjugate, containing Pomalidomide-based cereblon ligand and 4-unit PEG linker, which may be utilized to prepare PROTAC molecules.
Pomalidomide-PEG4-C2-NH2 hydrochloride
Pomalidomide-PEG4-C2-NH2 hydrochloride Chemical Structure CAS No.: 2357105-92-9
Product category: PROTAC Linkers
This product is for research use only, not for human use. We do not sell to patients.
Size Price Stock Qty
100mg
Other Sizes

Other Forms of Pomalidomide-PEG4-C2-NH2 hydrochloride:

  • Pomalidomide-PEG4-C2-NH2 TFA
  • E3 Ligase Ligand-Linker Conjugates 22
Official Supplier of:
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Top Publications Citing lnvivochem Products
Product Description
Pomalidomide-PEG4-C2-NH2 HCl is a synthetic E3 ligase (e.g. CRBN) ligand-linker conjugate, containing Pomalidomide-based cereblon ligand and 4-unit PEG linker, which may be utilized to prepare PROTAC molecules.
Pomalidomide-PEG4-C2-NH2 hydrochloride is a synthesized E3 ligase ligand-linker conjugate. It incorporates a Pomalidomide-based Cereblon (CRBN) ligand and a hydrophilic 4-unit polyethylene glycol (PEG4) linker terminating in a primary amine. This conjugate is designed as a key building block for the synthesis of PROTAC (PROteolysis TArgeting Chimera) molecules, enabling targeted protein degradation.
Biological Activity I Assay Protocols (From Reference)
Targets
Cereblon
CRBN (Cereblon), an E3 ubiquitin ligase.
ln Vitro
As a cereblon-binding ligand-linker conjugate, this compound itself has no intrinsic biological activity; its function is to recruit the E3 ubiquitin ligase complex. The terminal amine group is used to conjugate to a target protein ligand, forming a complete PROTAC that can bind to a target protein and induce its ubiquitination and proteasomal degradation.
ln Vivo
No specific in vivo activity has been reported for this conjugate alone; its in vivo degradation activity is observed only when conjugated to a target protein ligand to form a complete PROTAC molecule. The in vivo efficacy is typically evaluated in animal models of disease using the complete PROTAC.
Enzyme Assay
N/A; this compound is not assessed in isolated enzyme/receptor binding assays. As a synthetic intermediate, its quality is confirmed by analytical methods such as HPLC and NMR, with a standard purity of ≥98%. Its cereblon-binding affinity is validated as part of a complete PROTAC construct.
Cell Assay
N/A; this conjugate is not tested alone in cell-based assays. In a typical protocol for a complete PROTAC, cells are treated with the compound for 4-24 hours. Target protein levels are then quantified by Western blotting or a degradation assay to determine the DC50 (half-maximal degradation concentration).
Animal Protocol
N/A; no animal studies are performed with the ligand-linker conjugate alone. For in vivo studies of a final PROTAC, the molecule is formulated in a suitable vehicle (e.g., 10% DMSO, 40% PEG300, 5% Tween-80, 45% saline) and administered to animal models. Target engagement and efficacy are measured by protein knockdown and tumor growth inhibition.
ADME/Pharmacokinetics
The hydrochloride salt form enhances water solubility. This compound has a molecular weight of 528.98, a molecular formula of C23H33ClN4O8, and is typically stored as a powder at -20degC for up to 3 years, sealed and away from moisture. It is soluble in DMSO (220 mg/mL) and in water (100 mg/mL).
Toxicity/Toxicokinetics
This product is for research use only and is not for human or veterinary use. Standard chemical safety precautions should be followed during handling. It should be stored in a sealed and protected environment, avoiding exposure to moisture.
References

[1]. Compositions and methods for treating ezh2-mediated cancer. WO2018081530A1.

Additional Infomation
The four-unit PEG spacer provides an optimal length for balancing aqueous solubility and linker flexibility in PROTAC design. The terminal primary amine is a versatile handle for conjugation to target protein ligands via amide bond formation using standard coupling reagents like EDC or HATU.
These protocols are for reference only. InvivoChem does not independently validate these methods.
Physicochemical Properties
Molecular Formula
C23H33CLN4O8
Molecular Weight
528.983125448227
Exact Mass
528.198
CAS #
2357105-92-9
Related CAS #
Pomalidomide-PEG4-C2-NH2;2225940-52-1
PubChem CID
138695332
Appearance
Light yellow to light brown solid powder
Hydrogen Bond Donor Count
4
Hydrogen Bond Acceptor Count
10
Rotatable Bond Count
16
Heavy Atom Count
36
Complexity
736
Defined Atom Stereocenter Count
0
SMILES
C1CC(=O)NC(=O)C1N2C(=O)C3=C(C2=O)C(=CC=C3)NCCOCCOCCOCCOCCN.Cl
InChi Key
MKXCSQUCSKIOOB-UHFFFAOYSA-N
InChi Code
InChI=1S/C23H32N4O8.ClH/c24-6-8-32-10-12-34-14-15-35-13-11-33-9-7-25-17-3-1-2-16-20(17)23(31)27(22(16)30)18-4-5-19(28)26-21(18)29;/h1-3,18,25H,4-15,24H2,(H,26,28,29);1H
Chemical Name
4-[2-[2-[2-[2-(2-aminoethoxy)ethoxy]ethoxy]ethoxy]ethylamino]-2-(2,6-dioxopiperidin-3-yl)isoindole-1,3-dione;hydrochloride
HS Tariff Code
2934.99.9001
Storage

Powder      -20°C    3 years

                     4°C     2 years

In solvent   -80°C    6 months

                  -20°C    1 month

Note: Please store this product in a sealed and protected environment, avoid exposure to moisture.
Shipping Condition
Room temperature (This product is stable at ambient temperature for a few days during ordinary shipping and time spent in Customs)
Solubility Data
Solubility (In Vitro)
DMSO :~220 mg/mL (~415.89 mM)
H2O :~100 mg/mL (~189.04 mM)
Solubility (In Vivo)
Solubility in Formulation 1: 5.5 mg/mL (10.40 mM) in 10% DMSO + 40% PEG300 + 5% Tween80 + 45% Saline (add these co-solvents sequentially from left to right, and one by one), suspension solution; with sonication.
For example, if 1 mL of working solution is to be prepared, you can add 100 μL of 55.0 mg/mL clear DMSO stock solution to 400 μL PEG300 and mix evenly; then add 50 μL Tween-80 to the above solution and mix evenly; then add 450 μL normal saline to adjust the volume to 1 mL.
Preparation of saline: Dissolve 0.9 g of sodium chloride in 100 mL ddH₂ O to obtain a clear solution.

Solubility in Formulation 2: 5.5 mg/mL (10.40 mM) in 10% DMSO + 90% (20% SBE-β-CD in Saline) (add these co-solvents sequentially from left to right, and one by one), suspension solution; with ultrasonication.
For example, if 1 mL of working solution is to be prepared, you can add 100 μL of 55.0 mg/mL clear DMSO stock solution to 900 μL of 20% SBE-β-CD physiological saline solution and mix evenly.
Preparation of 20% SBE-β-CD in Saline (4°C,1 week): Dissolve 2 g SBE-β-CD in 10 mL saline to obtain a clear solution.

 (Please use freshly prepared in vivo formulations for optimal results.)
Preparing Stock Solutions 1 mg 5 mg 10 mg
1 mM 1.8904 mL 9.4522 mL 18.9043 mL
5 mM 0.3781 mL 1.8904 mL 3.7809 mL
10 mM 0.1890 mL 0.9452 mL 1.8904 mL

*Note: Please select an appropriate solvent for the preparation of stock solution based on your experiment needs. For most products, DMSO can be used for preparing stock solutions (e.g. 5 mM, 10 mM, or 20 mM concentration); some products with high aqueous solubility may be dissolved in water directly. Solubility information is available at the above Solubility Data section. Once the stock solution is prepared, aliquot it to routine usage volumes and store at -20°C or -80°C. Avoid repeated freeze and thaw cycles.

Calculator

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An example of molarity calculation using the molarity calculator is shown below:
What is the mass of compound required to make a 10 mM stock solution in 5 ml of DMSO given that the molecular weight of the compound is 350.26 g/mol?
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  • Enter 10 in the Concentration box and choose the correct unit (mM)
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  • The answer of 17.513 mg appears in the Mass box. In a similar way, you may calculate the volume and concentration.

Dilution Calculator allows you to calculate how to dilute a stock solution of known concentrations. For example, you may Enter C1, C2 & V2 to calculate V1, as detailed below:

What volume of a given 10 mM stock solution is required to make 25 ml of a 25 μM solution?
Using the equation C1V1 = C2V2, where C1=10 mM, C2=25 μM, V2=25 ml and V1 is the unknown:
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  • The answer of 62.5 μL (0.1 ml) appears in the Volume (Start) box
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Note: Chemical formula is case sensitive: C12H18N3O4  c12h18n3o4
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In vivo Formulation Calculator (Clear solution)
Step 1: Enter information below (Recommended: An additional animal to make allowance for loss during the experiment)
Step 2: Enter in vivo formulation (This is only a calculator, not the exact formulation for a specific product. Please contact us first if there is no in vivo formulation in the solubility section.)
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Calculation results

Working concentration mg/mL;

Method for preparing DMSO stock solution mg drug pre-dissolved in μL DMSO (stock solution concentration mg/mL). Please contact us first if the concentration exceeds the DMSO solubility of the batch of drug.

Method for preparing in vivo formulation:Take μL DMSO stock solution, next add μL PEG300, mix and clarify, next addμL Tween 80, mix and clarify, next add μL ddH2O,mix and clarify.

(1) Please be sure that the solution is clear before the addition of next solvent. Dissolution methods like vortex, ultrasound or warming and heat may be used to aid dissolving.
             (2) Be sure to add the solvent(s) in order.

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