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N-(Amino-PEG2)-N-bis(PEG3-azide)

Cat No.:V76730 Purity: ≥98%
N-(Amino-PEG2)-N-bis(PEG3-azide) is a PROTAC (PROteolysis TArgeting Chimera) linker and belongs to the PEG (Polyethylene glycol) class, may be utilized to prepare PROTAC molecules.
N-(Amino-PEG2)-N-bis(PEG3-azide)
N-(Amino-PEG2)-N-bis(PEG3-azide) Chemical Structure Product category: PROTAC Linkers
This product is for research use only, not for human use. We do not sell to patients.
Size Price Stock Qty
50mg
100mg
Other Sizes
Official Supplier of:
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Product Description
N-(Amino-PEG2)-N-bis(PEG3-azide) is a PROTAC (PROteolysis TArgeting Chimera) linker and belongs to the PEG (Polyethylene glycol) class, may be utilized to prepare PROTAC molecules. N-(Amino-PEG2)-N-bis(PEG3-azide) is a reagent for click chemistry. It has an azide (N3) moiety and could undergo CuAAc (copper-catalyzed azide-alkyne cycloaddition reaction) with compounds bearing an alkyne group. SPAAC (Strain-promoted alkyne-azide cycloaddition) may also happen with compounds bearing a BCN or DBCO group.
N-(Amino-PEG2)-N-bis(PEG3-azide) is a branched, PEG-based heterobifunctional linker. It contains one amine group and two azide (N3) groups, making it a valuable building block for PROTAC (Proteolysis-Targeting Chimera) synthesis, bioconjugation, and the creation of multi-functional biomaterials. It is a click chemistry reagent.
Biological Activity I Assay Protocols (From Reference)
Targets
PEGs
This linker itself does not have a biological target. Its purpose is to connect two ligands: one that binds to a target protein and another that recruits an E3 ubiquitin ligase to form a PROTAC, or to connect multiple functional moieties for bioconjugation. The "target" is a chemical reaction (click chemistry), not a biological protein.
ln Vitro
A linker separates the two ligands that make up PROTACs; one ligand is for an E3 ubiquitin ligase, and the other is for the target protein. Target proteins are selectively degraded by PROTACs by taking advantage of the intracellular ubiquitin-proteasome system[1].
This compound is a chemical reagent, not a bioactive drug candidate, and thus is not tested for in vitro biological activity on cells. Its utility lies in its chemical reactivity. The azide groups are highly reactive with alkyne-functionalized molecules via copper-catalyzed azide-alkyne cycloaddition (CuAAC) or strain-promoted alkyne-nitrone cycloaddition (SPAAC) click chemistry, allowing for efficient and specific conjugation.
ln Vivo
This compound is not used for in vivo efficacy studies. It is a building block for creating molecules (such as PROTACs) that are then tested in vivo. For example, a PROTAC synthesized using this linker could be administered to mice to induce the degradation of a specific oncogenic protein, leading to tumor growth inhibition. The linker's modularity makes it a critical tool for in vivo target validation.
Enzyme Assay
This compound is a chemical intermediate, so it is not used in biological assays such as enzyme/receptor binding. Instead, its reactivity can be demonstrated in a non-cellular chemical assay. The azide groups are shown to undergo click chemistry reactions with terminal alkynes. For example, N-(Amino-PEG2)-N-bis(PEG3-azide) is incubated with a fluorescently labeled alkyne in the presence of a copper catalyst. The reaction mixture is analyzed by LC-MS or gel electrophoresis, and the appearance of a new product with a molecular weight corresponding to the conjugation of both molecules is monitored.
Cell Assay
This compound is a chemical reagent, so it has no inherent activity in a standard cell-based assay. Its utility is demonstrated by using it to synthesize a molecule (like a PROTAC or a fluorescent probe) and then testing that molecule in cells. A typical cellular assay for a PROTAC built with this linker would involve treating cells with the PROTAC, then lysing the cells and measuring the level of the target protein by Western blotting to determine the DC50 (concentration for 50% protein degradation).
Animal Protocol
N/A - Not applicable for the linker itself. However, as an example of an in vivo study that a PROTAC made with this linker would be used for: Female athymic nude mice bearing subcutaneous xenografts (e.g., with target protein-expressing cancer cells) are administered the PROTAC intraperitoneally (i.p.) or intravenously (i.v.) at various doses (e.g., 10-100 mg/kg). Tumor volumes are measured every 2-3 days. At the end of the study, tumor and tissue lysates are analyzed by Western blot to quantify the degradation of the target protein.
ADME/Pharmacokinetics
N/A for the linker alone. The linker is a synthetic polymer (PEG) and is considered to be biologically inert and non-immunogenic. It is used specifically to improve the aqueous solubility, stability, and pharmacokinetic (PK) properties of the final PROTAC or conjugate. The presence of the PEG units can increase the hydrodynamic radius of a molecule, potentially reducing its clearance and extending its plasma half-life (t1/2).
Toxicity/Toxicokinetics
This compound is designed to be as non-toxic as possible. PEG is a biocompatible polymer, and the terminal functional groups (amine, azide) are generally considered safe for laboratory handling. The primary toxicity concerns would arise not from the linker itself, but from the final bioactive molecule (e.g., a PROTAC) it is used to build. Standard lab safety precautions should be followed.
References

[1]. Small-molecule PROTACs: An emerging and promising approach for the development of targeted therapy drugs. EBioMedicine. 2018 Oct;36:553-562.

Additional Infomation
N-(Amino-PEG2)-N-bis(PEG3-azide) is an advanced chemical tool for the field of chemical biology. Its design, containing three functional groups (one amine, two azides), allows for the creation of branched or multi-specific conjugates. It is particularly valuable for the synthesis of PROTACs that require a branched linker to connect one target-binding ligand and two E3 ligase-binding ligands (known as a "homo-PROTAC") or for creating "tandem" molecules.
These protocols are for reference only. InvivoChem does not independently validate these methods.
Physicochemical Properties
Molecular Formula
C22H46N8O8
Appearance
Light yellow to yellow liquid
HS Tariff Code
2934.99.9001
Storage

Powder      -20°C    3 years

                     4°C     2 years

In solvent   -80°C    6 months

                  -20°C    1 month

Note: (1). This product requires protection from light (avoid light exposure) during transportation and storage.  (2). Please store this product in a sealed and protected environment (e.g. under nitrogen), avoid exposure to moisture.
Shipping Condition
Room temperature (This product is stable at ambient temperature for a few days during ordinary shipping and time spent in Customs)
Solubility Data
Solubility (In Vitro)
DMSO :~100 mg/mL (~181.60 mM)
Solubility (In Vivo)
Solubility in Formulation 1: ≥ 2.5 mg/mL (4.54 mM) (saturation unknown) in 10% DMSO + 40% PEG300 + 5% Tween80 + 45% Saline (add these co-solvents sequentially from left to right, and one by one), clear solution.
For example, if 1 mL of working solution is to be prepared, you can add 100 μL of 25.0 mg/mL clear DMSO stock solution to 400 μL PEG300 and mix evenly; then add 50 μL Tween-80 to the above solution and mix evenly; then add 450 μL normal saline to adjust the volume to 1 mL.
Preparation of saline: Dissolve 0.9 g of sodium chloride in 100 mL ddH₂ O to obtain a clear solution.

Solubility in Formulation 2: ≥ 2.5 mg/mL (4.54 mM) (saturation unknown) in 10% DMSO + 90% (20% SBE-β-CD in Saline) (add these co-solvents sequentially from left to right, and one by one), clear solution.
For example, if 1 mL of working solution is to be prepared, you can add 100 μL of 25.0 mg/mL clear DMSO stock solution to 900 μL of 20% SBE-β-CD physiological saline solution and mix evenly.
Preparation of 20% SBE-β-CD in Saline (4°C,1 week): Dissolve 2 g SBE-β-CD in 10 mL saline to obtain a clear solution.

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Solubility in Formulation 3: ≥ 2.5 mg/mL (4.54 mM) (saturation unknown) in 10% DMSO + 90% Corn Oil (add these co-solvents sequentially from left to right, and one by one), clear solution.
For example, if 1 mL of working solution is to be prepared, you can add 100 μL of 25.0 mg/mL clear DMSO stock solution to 900 μL of corn oil and mix evenly.


 (Please use freshly prepared in vivo formulations for optimal results.)
Calculator

Molarity Calculator allows you to calculate the mass, volume, and/or concentration required for a solution, as detailed below:

  • Calculate the Mass of a compound required to prepare a solution of known volume and concentration
  • Calculate the Volume of solution required to dissolve a compound of known mass to a desired concentration
  • Calculate the Concentration of a solution resulting from a known mass of compound in a specific volume
An example of molarity calculation using the molarity calculator is shown below:
What is the mass of compound required to make a 10 mM stock solution in 5 ml of DMSO given that the molecular weight of the compound is 350.26 g/mol?
  • Enter 350.26 in the Molecular Weight (MW) box
  • Enter 10 in the Concentration box and choose the correct unit (mM)
  • Enter 5 in the Volume box and choose the correct unit (mL)
  • Click the “Calculate” button
  • The answer of 17.513 mg appears in the Mass box. In a similar way, you may calculate the volume and concentration.

Dilution Calculator allows you to calculate how to dilute a stock solution of known concentrations. For example, you may Enter C1, C2 & V2 to calculate V1, as detailed below:

What volume of a given 10 mM stock solution is required to make 25 ml of a 25 μM solution?
Using the equation C1V1 = C2V2, where C1=10 mM, C2=25 μM, V2=25 ml and V1 is the unknown:
  • Enter 10 into the Concentration (Start) box and choose the correct unit (mM)
  • Enter 25 into the Concentration (End) box and select the correct unit (mM)
  • Enter 25 into the Volume (End) box and choose the correct unit (mL)
  • Click the “Calculate” button
  • The answer of 62.5 μL (0.1 ml) appears in the Volume (Start) box
g/mol

Molecular Weight Calculator allows you to calculate the molar mass and elemental composition of a compound, as detailed below:

Note: Chemical formula is case sensitive: C12H18N3O4  c12h18n3o4
Instructions to calculate molar mass (molecular weight) of a chemical compound:
  • To calculate molar mass of a chemical compound, please enter the chemical/molecular formula and click the “Calculate’ button.
Definitions of molecular mass, molecular weight, molar mass and molar weight:
  • Molecular mass (or molecular weight) is the mass of one molecule of a substance and is expressed in the unified atomic mass units (u). (1 u is equal to 1/12 the mass of one atom of carbon-12)
  • Molar mass (molar weight) is the mass of one mole of a substance and is expressed in g/mol.
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Reconstitution Calculator allows you to calculate the volume of solvent required to reconstitute your vial.

  • Enter the mass of the reagent and the desired reconstitution concentration as well as the correct units
  • Click the “Calculate” button
  • The answer appears in the Volume (to add to vial) box
In vivo Formulation Calculator (Clear solution)
Step 1: Enter information below (Recommended: An additional animal to make allowance for loss during the experiment)
Step 2: Enter in vivo formulation (This is only a calculator, not the exact formulation for a specific product. Please contact us first if there is no in vivo formulation in the solubility section.)
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Calculation results

Working concentration mg/mL;

Method for preparing DMSO stock solution mg drug pre-dissolved in μL DMSO (stock solution concentration mg/mL). Please contact us first if the concentration exceeds the DMSO solubility of the batch of drug.

Method for preparing in vivo formulation:Take μL DMSO stock solution, next add μL PEG300, mix and clarify, next addμL Tween 80, mix and clarify, next add μL ddH2O,mix and clarify.

(1) Please be sure that the solution is clear before the addition of next solvent. Dissolution methods like vortex, ultrasound or warming and heat may be used to aid dissolving.
             (2) Be sure to add the solvent(s) in order.

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