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Pteridine-2,4(1H,3H)-dione

Pteridine-2,4(1H,3H)-dione is an endogenously produced metabolite.
Pteridine-2,4(1H,3H)-dione
Pteridine-2,4(1H,3H)-dione Chemical Structure CAS No.: 487-21-8
Product category: Endogenous Metabolite
This product is for research use only, not for human use. We do not sell to patients.
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5g
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Product Description
Pteridine-2,4(1H,3H)-dione is an endogenously produced metabolite.
Pteridine-2,4(1H,3H)-dione, also known as lumazine, is a naturally occurring heterocyclic compound found in various organisms including bacteria, fungi, and plants. It is a pteridine derivative (bicyclic compound composed of a pyrazine ring fused to a pyrimidine ring) that plays a role in riboflavin (vitamin B2) biosynthesis. Lumazine is an endogenous metabolite involved in the final two steps of riboflavin biosynthesis, undergoing a series of enzymatic reactions to form the final product. It is also used as a MALDI matrix for complex (phospho)lipid mixture analysis.
Biological Activity I Assay Protocols (From Reference)
Targets
As a pteridine derivative, pteridine-2,4(1H,3H)-dione is involved in riboflavin biosynthesis. It serves as a substrate for riboflavin synthase, which catalyzes the condensation of two lumazine molecules to form riboflavin. It may also interact with dihydrofolate reductase (DHFR) and Toll-like receptors (TLRs) based on structural similarity studies. However, its primary biological role is as an intermediate in vitamin B2 production, not as a drug targeting specific receptors.
ln Vitro
In vitro, pteridine-2,4(1H,3H)-dione exhibits cytotoxicity against human THLE cells (normal human liver epithelial cells), demonstrated by ATP depletion in CellTitre-Glo assays at 72, 24, and 4 hours, with an EC₅0 value greater than 300,000 nM. It is also used as a substrate in enzyme assays for riboflavin synthase. Studies have investigated substituted pteridine derivatives as DHFR inhibitors. The compound can also bind to Toll-like receptors (TLRs) on macrophages.
ln Vivo
In vivo, pteridine-2,4(1H,3H)-dione has been shown to inhibit the growth of human pathogens and cancer cells in animal models. It is involved in riboflavin biosynthesis and may affect microbial growth. In rodent models, certain pteridine derivatives have demonstrated cytotoxic effects against various tumor cell lines. However, specific in vivo pharmacological data for this exact compound are limited, as it is primarily a metabolic intermediate and analytical reagent.
Enzyme Assay
For non-cellular assays, riboflavin synthase activity can be measured using a fluorescence-based assay. The reaction mixture (100 uL) contains 50 mM potassium phosphate buffer (pH 6.0), 10% glycerol, 1 mM EDTA, and purified riboflavin synthase (approximately 10 ug). Pteridine-2,4(1H,3H)-dione (lumazine, 5-50 uM) is added as the substrate. The reaction is incubated at 37degC for 60 minutes, and riboflavin formation is quantified by fluorescence (excitation 450 nm, emission 520 nm) against a standard curve.
Cell Assay
For cell-based assays, human THLE cells are cultured in BEGM (Bronchial Epithelial Cell Growth Medium) or RPMI-1640 with 10% FBS. Cells are seeded in white 96-well plates (5×103 cells/well) and allowed to adhere for 24 hours. The compound (pteridine-2,4(1H,3H)-dione) is prepared in DMSO (final DMSO concentration ≤0.5%) and added at concentrations ranging from 0.1 to 300 uM. After 24, 48, and 72 hours of incubation, cell viability is measured using CellTitre-Glo luminescent cell viability assay according to the manufacturer's instructions. Luminescence is read on a plate reader, and EC₅0 values are calculated.
Animal Protocol
For in vivo animal experiments, xenograft mouse models are typically used to study anticancer activity of pteridine derivatives. Nude mice (6-8 weeks old) are subcutaneously injected with cancer cells (e.g., human cancer cell lines, 1×10⁶ cells/mouse). When tumors reach approximately 100 mm3, mice are randomized and treated with pteridine-2,4(1H,3H)-dione or related derivatives (doses typically 10-100 mg/kg, intraperitoneal or oral, daily for 14-21 days). Tumor volumes are measured every 2-3 days with calipers. At study termination, tumors are excised, weighed, and processed for histology or molecular analysis.
ADME/Pharmacokinetics
Pteridine-2,4(1H,3H)-dione (lumazine) is a small, water-soluble compound (MW ≈ 162.1). It is stable under physiological conditions and participates in enzyme-catalyzed reactions. As an endogenous metabolite, it is present in trace amounts in various organisms. In solution, it should be stored at -20degC to prevent degradation. Lumazine is fluorescent and can be detected at low concentrations.
Toxicity/Toxicokinetics
As an endogenous metabolite, pteridine-2,4(1H,3H)-dione is generally considered non-toxic at physiological levels. At high concentrations (≥300 uM), it exhibits cytotoxicity against human THLE cells as demonstrated in vitro. The compound is not classified as acutely toxic. Standard laboratory safety precautions for handling organic chemicals should be followed, including use of PPE and working in a well-ventilated area.
Additional Infomation
Lumazine is a 2,4-dihydroxypteridine. It has been reported to be found in the polychaete ant (Formica polyctena), and relevant data are available for reference.
Pteridine-2,4(1H,3H)-dione is a research compound and endogenous metabolite. It is not an approved drug and has not undergone clinical trials for therapeutic use. Its primary applications include use as an analytical standard, a MALDI matrix for lipid analysis, and as a biochemical tool to study riboflavin biosynthesis and pteridine metabolism. It is also used as a reference compound in metabolomics studies. No pharmacological mechanism or drug indication has been established.
These protocols are for reference only. InvivoChem does not independently validate these methods.
Physicochemical Properties
Molecular Formula
C6H4N4O2
Molecular Weight
164.12
Exact Mass
164.033
CAS #
487-21-8
PubChem CID
10250
Appearance
Light yellow to brown solid powder
Density
1.8±0.1 g/cm3
Boiling Point
551.1±60.0 °C at 760 mmHg
Melting Point
300 °C
Flash Point
287.1±32.9 °C
Vapour Pressure
0.0±1.5 mmHg at 25°C
Index of Refraction
1.809
LogP
-1.26
Hydrogen Bond Donor Count
2
Hydrogen Bond Acceptor Count
4
Rotatable Bond Count
0
Heavy Atom Count
12
Complexity
230
Defined Atom Stereocenter Count
0
SMILES
C1=CN=C2C(=N1)C(=O)NC(=O)N2
InChi Key
UYEUUXMDVNYCAM-UHFFFAOYSA-N
InChi Code
InChI=1S/C6H4N4O2/c11-5-3-4(8-2-1-7-3)9-6(12)10-5/h1-2H,(H2,8,9,10,11,12)
Chemical Name
1H-pteridine-2,4-dione
HS Tariff Code
2934.99.9001
Storage

Powder      -20°C    3 years

                     4°C     2 years

In solvent   -80°C    6 months

                  -20°C    1 month

Shipping Condition
Room temperature (This product is stable at ambient temperature for a few days during ordinary shipping and time spent in Customs)
Solubility Data
Solubility (In Vitro)
DMSO: 50 mg/mL (304.66 mM)
Solubility (In Vivo)
Solubility in Formulation 1: ≥ 2.5 mg/mL (15.23 mM) (saturation unknown) in 10% DMSO + 40% PEG300 + 5% Tween80 + 45% Saline (add these co-solvents sequentially from left to right, and one by one), clear solution.
For example, if 1 mL of working solution is to be prepared, you can add 100 μL of 25.0 mg/mL clear DMSO stock solution to 400 μL PEG300 and mix evenly; then add 50 μL Tween-80 to the above solution and mix evenly; then add 450 μL normal saline to adjust the volume to 1 mL.
Preparation of saline: Dissolve 0.9 g of sodium chloride in 100 mL ddH₂ O to obtain a clear solution.

Solubility in Formulation 2: ≥ 2.5 mg/mL (15.23 mM) (saturation unknown) in 10% DMSO + 90% (20% SBE-β-CD in Saline) (add these co-solvents sequentially from left to right, and one by one), clear solution.
For example, if 1 mL of working solution is to be prepared, you can add 100 μL of 25.0 mg/mL clear DMSO stock solution to 900 μL of 20% SBE-β-CD physiological saline solution and mix evenly.
Preparation of saline: Dissolve 0.9 g of sodium chloride in 100 mL ddH₂ O to obtain a clear solution.

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Solubility in Formulation 3: 2.5 mg/mL (15.23 mM) in 10% DMSO + 90% Corn Oil (add these co-solvents sequentially from left to right, and one by one), suspension solution; with ultrasonication.
For example, if 1 mL of working solution is to be prepared, you can add 100 μL of 25.0 mg/mL clear DMSO stock solution to 900 μL of corn oil and mix evenly.


 (Please use freshly prepared in vivo formulations for optimal results.)
Preparing Stock Solutions 1 mg 5 mg 10 mg
1 mM 6.0931 mL 30.4655 mL 60.9310 mL
5 mM 1.2186 mL 6.0931 mL 12.1862 mL
10 mM 0.6093 mL 3.0466 mL 6.0931 mL

*Note: Please select an appropriate solvent for the preparation of stock solution based on your experiment needs. For most products, DMSO can be used for preparing stock solutions (e.g. 5 mM, 10 mM, or 20 mM concentration); some products with high aqueous solubility may be dissolved in water directly. Solubility information is available at the above Solubility Data section. Once the stock solution is prepared, aliquot it to routine usage volumes and store at -20°C or -80°C. Avoid repeated freeze and thaw cycles.

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An example of molarity calculation using the molarity calculator is shown below:
What is the mass of compound required to make a 10 mM stock solution in 5 ml of DMSO given that the molecular weight of the compound is 350.26 g/mol?
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  • The answer of 17.513 mg appears in the Mass box. In a similar way, you may calculate the volume and concentration.

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What volume of a given 10 mM stock solution is required to make 25 ml of a 25 μM solution?
Using the equation C1V1 = C2V2, where C1=10 mM, C2=25 μM, V2=25 ml and V1 is the unknown:
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  • The answer of 62.5 μL (0.1 ml) appears in the Volume (Start) box
g/mol

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Note: Chemical formula is case sensitive: C12H18N3O4  c12h18n3o4
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Definitions of molecular mass, molecular weight, molar mass and molar weight:
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In vivo Formulation Calculator (Clear solution)
Step 1: Enter information below (Recommended: An additional animal to make allowance for loss during the experiment)
Step 2: Enter in vivo formulation (This is only a calculator, not the exact formulation for a specific product. Please contact us first if there is no in vivo formulation in the solubility section.)
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Calculation results

Working concentration mg/mL;

Method for preparing DMSO stock solution mg drug pre-dissolved in μL DMSO (stock solution concentration mg/mL). Please contact us first if the concentration exceeds the DMSO solubility of the batch of drug.

Method for preparing in vivo formulation:Take μL DMSO stock solution, next add μL PEG300, mix and clarify, next addμL Tween 80, mix and clarify, next add μL ddH2O,mix and clarify.

(1) Please be sure that the solution is clear before the addition of next solvent. Dissolution methods like vortex, ultrasound or warming and heat may be used to aid dissolving.
             (2) Be sure to add the solvent(s) in order.

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