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2,5-Dimethylpyrazine (NSC 49139)

2,5-Dimethylpyrazine is an endogenously produced metabolite.
2,5-Dimethylpyrazine (NSC 49139)
2,5-Dimethylpyrazine (NSC 49139) Chemical Structure CAS No.: 123-32-0
Product category: Endogenous Metabolite
This product is for research use only, not for human use. We do not sell to patients.
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50g
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Product Description
2,5-Dimethylpyrazine is an endogenously produced metabolite.
2,5-Dimethylpyrazine (2,5-DMP) is an organic compound belonging to the pyrazine family, characterized by two methyl groups attached to the pyrazine ring at positions 2 and 5. It is a colorless liquid with a distinct nutty odor and a slightly sweet taste. Naturally found in roasted foods such as coffee, nuts, and chocolate, it is commonly used as a food flavoring agent. Beyond its culinary uses, 2,5-DMP has attracted research interest for its potential therapeutic applications, including anticancer, anti-inflammatory, antimicrobial, and antioxidant activities. It is also used as an insecticide and fungicide in agriculture.
Biological Activity I Assay Protocols (From Reference)
Targets
2,5-Dimethylpyrazine targets multiple cellular processes. It is believed to inhibit cyclooxygenase-2 (COX-2), the enzyme responsible for generating pro-inflammatory molecules. It also reduces plasma testosterone levels, affects prostate and seminal vesicle weight, and may inhibit testosterone uptake. The compound induces programmed cell death (apoptosis) and suppresses angiogenesis. Additionally, it interacts with L-threonine dehydrogenase in microbial systems and has antimicrobial activity against various bacteria and fungi.
ln Vitro
In vitro, 2,5-DMP effectively reduces the viability of breast cancer cells through mechanisms involving oxidative stress induction and modulation of cell cycle progression. It induces programmed cell death and suppresses angiogenesis, processes crucial for tumor development. The compound demonstrates broad-spectrum antimicrobial activity against various bacteria and fungi. It also acts as an antioxidant, effectively neutralizing free radicals and inhibiting lipid peroxidation. In vitro, 2,5-DMP reduces breast cancer cell viability via ROS generation and G1 phase arrest.
ln Vivo
In vivo, 2,5-DMP has been shown to have anti-inflammatory effects in mice and rats by inhibiting the production of prostaglandins and leukotrienes. In male rats, administration of 100 mg/kg of 2,5-DMP decreases the weight of the prostate and seminal vesicles, reduces plasma testosterone levels, and decreases acid phosphatase activity and fructose content in seminal vesicles, suggesting inhibition of testosterone uptake. The compound also exhibits cancer chemopreventive potential in animal models and reduces inflammation through COX-2 inhibition.
Enzyme Assay
For non-cellular assays, COX-2 enzyme activity can be measured using a fluorescence-based assay. The compound is incubated with purified COX-2 enzyme (100 uM) and arachidonic acid substrate (5 uM) in 100 uL of assay buffer (50 mM Tris-HCl, pH 7.4, 100 uM phenol). After 30 minutes at 37degC, the reaction is stopped by adding 1 M HCl, and prostaglandin E2 (PGE2) production is quantified by ELISA. The IC50 for COX-2 inhibition is determined using concentrations of 2,5-DMP from 1 to 500 uM. For lipid peroxidation, a TBARS assay is used.
Cell Assay
For cell-based assays, breast cancer cells (e.g., MCF-7 or MDA-MB-231) are seeded in 96-well plates (1×10⁴ cells/well) in RPMI-1640 with 10% FBS. After 24 hours, cells are treated with 2,5-DMP (0-500 uM) for 24-72 hours. Cell viability is assessed by MTT assay. Apoptosis is evaluated by Annexin V-FITC/PI staining followed by flow cytometry. ROS generation is measured using DCFH-DA (10 uM, 30 min). Cell cycle distribution is analyzed by propidium iodide (PI) staining and flow cytometry.
Animal Protocol
For in vivo animal experiments, male Sprague-Dawley rats or C57BL/6 mice are used. For anti-inflammatory studies, animals are treated with 2,5-DMP (10-100 mg/kg, oral or intraperitoneal) 1 hour before induction of inflammation by carrageenan (1% in saline, subplantar injection into the hind paw). Paw volume is measured using a plethysmometer at 1, 2, 3, 4, and 6 hours post-induction. For prostate studies, male rats are administered 2,5-DMP (100 mg/kg/day, oral) for 7-14 days. At the end of treatment, animals are sacrificed, and prostate and seminal vesicles are removed and weighed. Blood is collected for testosterone measurement by ELISA/radioimmunoassay. Fructose content in seminal vesicles and acid phosphatase activity in the prostate are determined biochemically.
ADME/Pharmacokinetics
2,5-DMP has a molecular weight of 108.14 and a boiling point of approximately 155degC. It is slightly soluble in water but miscible with organic solvents such as ethanol, diethyl ether, and chloroform. It is stable under normal storage conditions and should be kept in a cool, well-ventilated area away from strong oxidants.
Toxicity/Toxicokinetics
2,5-DMP has low acute toxicity, with an oral LD₅0 of approximately 1000 mg/kg in rats. It is not classified as a hazardous substance at low concentrations. However, at high doses, it may cause respiratory tract irritation. As a food additive, it is generally recognized as safe (GRAS) by the FDA for use as a flavoring agent. Standard laboratory safety precautions should be followed when handling.
Additional Infomation
2,5-Dimethylpyrazine is a type of pyrazine compound. It has been reported to be present in Streptomyces antioxidans, Zea mays, and other organisms with relevant data. 2,5-Dimethylpyrazine is a metabolite found in or produced by Saccharomyces cerevisiae.
2,5-DMP is a flavoring agent and research compound. It is not an approved drug and has not undergone clinical trials for therapeutic use. Its primary applications are in the food industry as a flavoring agent and in agricultural contexts as an insecticide, fungicide, and nematicide. Preclinical research has investigated its potential anticancer, anti-inflammatory, and antimicrobial activities. It is also used as a building block in organic synthesis and as a reference compound in analytical chemistry.
These protocols are for reference only. InvivoChem does not independently validate these methods.
Physicochemical Properties
Molecular Formula
C6H8N2
Molecular Weight
108.14
Exact Mass
108.068
CAS #
123-32-0
PubChem CID
31252
Appearance
Colorless to light yellow liquid
Density
1.0±0.1 g/cm3
Boiling Point
155.0±0.0 °C at 760 mmHg
Melting Point
15 °C
Flash Point
63.9±0.0 °C
Vapour Pressure
4.0±0.2 mmHg at 25°C
Index of Refraction
1.504
LogP
0.64
Hydrogen Bond Donor Count
0
Hydrogen Bond Acceptor Count
2
Rotatable Bond Count
0
Heavy Atom Count
8
Complexity
62.9
Defined Atom Stereocenter Count
0
SMILES
CC1=CN=C(C)C=N1
InChi Key
LCZUOKDVTBMCMX-UHFFFAOYSA-N
InChi Code
InChI=1S/C6H8N2/c1-5-3-8-6(2)4-7-5/h3-4H,1-2H3
Chemical Name
2,5-dimethylpyrazine
HS Tariff Code
2934.99.9001
Storage

Powder      -20°C    3 years

                     4°C     2 years

In solvent   -80°C    6 months

                  -20°C    1 month

Shipping Condition
Room temperature (This product is stable at ambient temperature for a few days during ordinary shipping and time spent in Customs)
Solubility Data
Solubility (In Vitro)
DMSO: 50 mg/mL (462.36 mM)
Solubility (In Vivo)
Solubility in Formulation 1: ≥ 2.5 mg/mL (23.12 mM) (saturation unknown) in 10% DMSO + 40% PEG300 + 5% Tween80 + 45% Saline (add these co-solvents sequentially from left to right, and one by one), clear solution.
For example, if 1 mL of working solution is to be prepared, you can add 100 μL of 25.0 mg/mL clear DMSO stock solution to 400 μL PEG300 and mix evenly; then add 50 μL Tween-80 to the above solution and mix evenly; then add 450 μL normal saline to adjust the volume to 1 mL.
Preparation of saline: Dissolve 0.9 g of sodium chloride in 100 mL ddH₂ O to obtain a clear solution.

Solubility in Formulation 2: ≥ 2.5 mg/mL (23.12 mM) (saturation unknown) in 10% DMSO + 90% (20% SBE-β-CD in Saline) (add these co-solvents sequentially from left to right, and one by one), clear solution.
For example, if 1 mL of working solution is to be prepared, you can add 100 μL of 25.0 mg/mL clear DMSO stock solution to 900 μL of 20% SBE-β-CD physiological saline solution and mix evenly.
Preparation of 20% SBE-β-CD in Saline (4°C,1 week): Dissolve 2 g SBE-β-CD in 10 mL saline to obtain a clear solution.

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Solubility in Formulation 3: ≥ 2.5 mg/mL (23.12 mM) (saturation unknown) in 10% DMSO + 90% Corn Oil (add these co-solvents sequentially from left to right, and one by one), clear solution.
For example, if 1 mL of working solution is to be prepared, you can add 100 μL of 25.0 mg/mL clear DMSO stock solution to 900 μL of corn oil and mix evenly.


 (Please use freshly prepared in vivo formulations for optimal results.)
Preparing Stock Solutions 1 mg 5 mg 10 mg
1 mM 9.2473 mL 46.2364 mL 92.4727 mL
5 mM 1.8495 mL 9.2473 mL 18.4945 mL
10 mM 0.9247 mL 4.6236 mL 9.2473 mL

*Note: Please select an appropriate solvent for the preparation of stock solution based on your experiment needs. For most products, DMSO can be used for preparing stock solutions (e.g. 5 mM, 10 mM, or 20 mM concentration); some products with high aqueous solubility may be dissolved in water directly. Solubility information is available at the above Solubility Data section. Once the stock solution is prepared, aliquot it to routine usage volumes and store at -20°C or -80°C. Avoid repeated freeze and thaw cycles.

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An example of molarity calculation using the molarity calculator is shown below:
What is the mass of compound required to make a 10 mM stock solution in 5 ml of DMSO given that the molecular weight of the compound is 350.26 g/mol?
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  • The answer of 17.513 mg appears in the Mass box. In a similar way, you may calculate the volume and concentration.

Dilution Calculator allows you to calculate how to dilute a stock solution of known concentrations. For example, you may Enter C1, C2 & V2 to calculate V1, as detailed below:

What volume of a given 10 mM stock solution is required to make 25 ml of a 25 μM solution?
Using the equation C1V1 = C2V2, where C1=10 mM, C2=25 μM, V2=25 ml and V1 is the unknown:
  • Enter 10 into the Concentration (Start) box and choose the correct unit (mM)
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  • The answer of 62.5 μL (0.1 ml) appears in the Volume (Start) box
g/mol

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Note: Chemical formula is case sensitive: C12H18N3O4  c12h18n3o4
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Definitions of molecular mass, molecular weight, molar mass and molar weight:
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In vivo Formulation Calculator (Clear solution)
Step 1: Enter information below (Recommended: An additional animal to make allowance for loss during the experiment)
Step 2: Enter in vivo formulation (This is only a calculator, not the exact formulation for a specific product. Please contact us first if there is no in vivo formulation in the solubility section.)
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Calculation results

Working concentration mg/mL;

Method for preparing DMSO stock solution mg drug pre-dissolved in μL DMSO (stock solution concentration mg/mL). Please contact us first if the concentration exceeds the DMSO solubility of the batch of drug.

Method for preparing in vivo formulation:Take μL DMSO stock solution, next add μL PEG300, mix and clarify, next addμL Tween 80, mix and clarify, next add μL ddH2O,mix and clarify.

(1) Please be sure that the solution is clear before the addition of next solvent. Dissolution methods like vortex, ultrasound or warming and heat may be used to aid dissolving.
             (2) Be sure to add the solvent(s) in order.

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