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Elenbecestat (E2609)

Cat No.:V71446 Purity: ≥98%
Elenbecestat (E2609) is a potent, orally bioactive, CNS-penetrating BACE-1 inhibitor.
Elenbecestat (E2609)
Elenbecestat (E2609) Chemical Structure CAS No.: 1388651-30-6
Product category: Beta-secretase
This product is for research use only, not for human use. We do not sell to patients.
Size Price Stock Qty
1mg
5mg
10mg
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Product Description
Elenbecestat (E2609) is a potent, orally bioactive, CNS-penetrating BACE-1 inhibitor. Elenbecestat may be used in AD/Alzheimer's disease research.
Elenbecestat (E2609) is a novel, potent, orally bioavailable BACE1 inhibitor for the treatment of Alzheimer's disease (AD). It demonstrates prolonged reductions in plasma beta-amyloid levels after single dosing. The compound has a molecular formula of C19H18F3N5O2S and a molecular weight of 437.44. Elenbecestat is a CNS-penetrant BACE-1 inhibitor.
Biological Activity I Assay Protocols (From Reference)
Targets
BACE-1[1]
Elenbecestat targets beta-site amyloid precursor protein cleaving enzyme 1 (BACE1). BACE1 is the enzyme responsible for the first cleavage of amyloid precursor protein (APP) in the production of amyloid-beta peptides. By inhibiting BACE1, Elenbecestat reduces the production of amyloid-beta, thereby decreasing amyloid plaque formation in the brain. This mechanism is a key strategy for the treatment of Alzheimer's disease.
ln Vitro
In a cell-based experiment, elenebecestat (E2609) has an IC50 of around 7 nmol/L, making it a strong BACE1 inhibitor[2]. It has been demonstrated that elenebecestat lowers the generation of Ab in rodent plasma, brain, and cerebrospinal fluid (CSF)[2].
In vitro, Elenbecestat is a potent BACE1 inhibitor with demonstrated activity in reducing amyloid-beta production. The compound shows high potency against BACE1 and is CNS-penetrant. Standard in vitro assays include enzyme activity assays using purified BACE1 and fluorogenic substrates, cell-based assays measuring Aβ production in APP-expressing cells, and selectivity profiling against other aspartyl proteases. The compound's IC50 for BACE1 inhibition is determined from dose-response curves.
ln Vivo
Potently inhibiting the synthesis of Ab1-40 and Ab1-42 in the plasma and CSF of non-human primates is elenbecestat (E2609; 0.3-30 mg/kg; po)[2]. Following a single daily dosage, elenebecestat exhibits a plasma half-life of 12–16 hours[1].
In vivo, Elenbecestat demonstrates prolonged reductions in plasma beta-amyloid levels after single dosing. The compound is orally bioavailable and CNS-penetrant, allowing it to reach the brain and inhibit BACE1 activity. It has been studied in clinical trials for Alzheimer's disease. However, clinical development has been discontinued due to lack of efficacy or safety concerns. The compound is for research use only and is used to study BACE1 inhibition in Alzheimer's disease.
Enzyme Assay
For non-cell-based receptor binding assays, Elenbecestat can be evaluated using purified BACE1 enzyme. Enzyme activity assays are performed using a fluorogenic substrate that is cleaved by BACE1. Increasing concentrations of the test compound are added, and the rate of substrate cleavage is measured by fluorescence. IC50 values are calculated from the inhibition curves. Selectivity profiling is performed using related aspartyl proteases such as BACE2, cathepsin D, and renin to assess specificity.
Cell Assay
For in vitro cellular assays, cells expressing amyloid precursor protein (APP) are cultured in appropriate media. Cells are treated with various concentrations of Elenbecestat, and Aβ production in the cell culture supernatant is measured using ELISA or immunoassay. The reduction in Aβ levels compared to control wells indicates BACE1 inhibitory activity. IC50 values for cellular Aβ reduction are calculated from dose-response curves. Cytotoxicity is assessed using MTT or LDH assays to ensure that observed effects are not due to cell death.
Animal Protocol
Animal/Disease Models: Cynomolgus monkeys (pharmacokinetic/PK analysis)[2]
Doses: 0.3 mg/kg; 1 mg/kg; 3 mg/kg; 30 mg/kg
Route of Administration: Oral administration
Experimental Results: Potently inhibits Ab1- 40 and Ab1-42 production in the plasma and CSF.
For in vivo animal studies, Elenbecestat is typically administered orally to transgenic mouse models of Alzheimer's disease. Blood samples are collected at various time points post-administration for measurement of plasma Aβ levels. Brain tissue is collected for measurement of brain Aβ levels and BACE1 activity. Behavioral tests may be performed to assess cognitive function. Pharmacokinetic studies involve measuring compound concentrations in plasma and brain tissue. Dosing regimens vary depending on the specific model and study objectives. Clinical trials have been conducted in healthy subjects and Alzheimer's disease patients.
ADME/Pharmacokinetics
Elenbecestat is an orally bioavailable compound with a molecular weight of 437.44 and a molecular formula of C19H18F3N5O2S. It is soluble in DMSO (78 mg/mL or 87 mg/mL) and ethanol (11 mg/mL). The compound demonstrates prolonged reductions in plasma beta-amyloid levels after single dosing. It has been studied in multiple clinical trials, including Phase 1 and Phase 2 studies. However, clinical development has been discontinued. The compound is for research use only.
Toxicity/Toxicokinetics
The toxicity profile of Elenbecestat has been evaluated in clinical trials. Common adverse effects may include those associated with BACE1 inhibition, such as effects on myelination and cognitive function. The compound's clinical development has been discontinued, potentially due to lack of efficacy or safety concerns. The compound is for research use only and not for human consumption. Standard toxicological evaluation would include acute and repeated-dose toxicity studies, as well as assessment of effects on the central nervous system.
References

[1]. Secretase inhibitors for the treatment of Alzheimer's disease: Long road ahead. Eur J Med Chem. 2018 Mar 25;148:436-452.

[2]. A single dose of the beta-secretase inhibitor, e2609, decreases CSF bace1 enzymatic activity in cynomolgus monkeys. Alzheimer’s & Dementia, 8(4), P224.

Additional Infomation
Elenbecestat is being investigated in the clinical trial NCT02956486 (a 24-month study designed to evaluate the efficacy and safety of Elenbecestat (E2609) in patients with early-stage Alzheimer's disease).
Elenbecestat (E2609) is a novel, potent, orally bioavailable BACE1 inhibitor for the treatment of Alzheimer's disease (AD). It demonstrates prolonged reductions in plasma beta-amyloid levels after single dosing. The compound is CNS-penetrant and has been studied in clinical trials. However, clinical development has been discontinued. It is for research use only and is used to study BACE1 inhibition in Alzheimer's disease.
These protocols are for reference only. InvivoChem does not independently validate these methods.
Physicochemical Properties
Molecular Formula
C19H18F3N5O2S
Molecular Weight
437.438732624054
Exact Mass
437.113
CAS #
1388651-30-6
PubChem CID
57827330
Appearance
Light yellow to yellow solid powder
LogP
1.4
Hydrogen Bond Donor Count
2
Hydrogen Bond Acceptor Count
9
Rotatable Bond Count
4
Heavy Atom Count
30
Complexity
687
Defined Atom Stereocenter Count
3
SMILES
S1C(N)=N[C@@]2(C3C(=CC=C(C=3)NC(C3C=NC(C(F)F)=CN=3)=O)F)CO[C@H](C)[C@H]2C1
InChi Key
AACUJFVOHGRMTR-DPXNYUHVSA-N
InChi Code
InChI=1S/C19H18F3N5O2S/c1-9-12-7-30-18(23)27-19(12,8-29-9)11-4-10(2-3-13(11)20)26-17(28)15-6-24-14(5-25-15)16(21)22/h2-6,9,12,16H,7-8H2,1H3,(H2,23,27)(H,26,28)/t9-,12-,19-/m1/s1
Chemical Name
N-[3-[(4aS,5R,7aS)-2-amino-5-methyl-4,4a,5,7-tetrahydrofuro[3,4-d][1,3]thiazin-7a-yl]-4-fluorophenyl]-5-(difluoromethyl)pyrazine-2-carboxamide
HS Tariff Code
2934.99.9001
Storage

Powder      -20°C    3 years

                     4°C     2 years

In solvent   -80°C    6 months

                  -20°C    1 month

Shipping Condition
Room temperature (This product is stable at ambient temperature for a few days during ordinary shipping and time spent in Customs)
Solubility Data
Solubility (In Vitro)
DMSO: ≥ 250 mg/mL (571.51 mM)
Solubility (In Vivo)
Solubility in Formulation 1: ≥ 2.08 mg/mL (4.75 mM) (saturation unknown) in 10% DMSO + 40% PEG300 + 5% Tween80 + 45% Saline (add these co-solvents sequentially from left to right, and one by one), clear solution.
For example, if 1 mL of working solution is to be prepared, you can add 100 μL of 20.8 mg/mL clear DMSO stock solution to 400 μL PEG300 and mix evenly; then add 50 μL Tween-80 to the above solution and mix evenly; then add 450 μL normal saline to adjust the volume to 1 mL.
Preparation of saline: Dissolve 0.9 g of sodium chloride in 100 mL ddH₂ O to obtain a clear solution.

Solubility in Formulation 2: ≥ 2.08 mg/mL (4.75 mM) (saturation unknown) in 10% DMSO + 90% Corn Oil (add these co-solvents sequentially from left to right, and one by one), clear solution.
For example, if 1 mL of working solution is to be prepared, you can add 100 μL of 20.8 mg/mL clear DMSO stock solution to 900 μL of corn oil and mix evenly.

 (Please use freshly prepared in vivo formulations for optimal results.)
Preparing Stock Solutions 1 mg 5 mg 10 mg
1 mM 2.2860 mL 11.4301 mL 22.8603 mL
5 mM 0.4572 mL 2.2860 mL 4.5721 mL
10 mM 0.2286 mL 1.1430 mL 2.2860 mL

*Note: Please select an appropriate solvent for the preparation of stock solution based on your experiment needs. For most products, DMSO can be used for preparing stock solutions (e.g. 5 mM, 10 mM, or 20 mM concentration); some products with high aqueous solubility may be dissolved in water directly. Solubility information is available at the above Solubility Data section. Once the stock solution is prepared, aliquot it to routine usage volumes and store at -20°C or -80°C. Avoid repeated freeze and thaw cycles.

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Note: Chemical formula is case sensitive: C12H18N3O4  c12h18n3o4
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Working concentration mg/mL;

Method for preparing DMSO stock solution mg drug pre-dissolved in μL DMSO (stock solution concentration mg/mL). Please contact us first if the concentration exceeds the DMSO solubility of the batch of drug.

Method for preparing in vivo formulation:Take μL DMSO stock solution, next add μL PEG300, mix and clarify, next addμL Tween 80, mix and clarify, next add μL ddH2O,mix and clarify.

(1) Please be sure that the solution is clear before the addition of next solvent. Dissolution methods like vortex, ultrasound or warming and heat may be used to aid dissolving.
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Clinical Trial Information
Title:Dose-Finding Study To Evaluate Safety, Tolerability, and Efficacy of E2609 in Participants With Mild Cognitive Impairment Due to Alzheimer's Disease (Prodromal Alzheimer's Disease) and Mild to Moderate Dementia Due to Alzheimer's Disease
Status:Terminated
updateDate:2021-03-05
Ctid:NCT02322021

Link: https://clinicaltrials.gov/ct2/show/NCT02322021

Conditions:Alzheimer Disease|Dementia, Alzheimer Type
Interventions:Placebo
Phase:Phase 2
Title:A 24-Month Study to Evaluate the Efficacy and Safety of Elenbecestat (E2609) in Participants With Early Alzheimer's Disease
Status:Terminated
updateDate:2021-02-03
Ctid:NCT02956486

Link: https://clinicaltrials.gov/ct2/show/NCT02956486

Conditions:Alzheimer's Disease
Interventions:Placebo
Phase:Phase 3
Title:A Study to Evaluate the Pharmacokinetics of E2609 and Its Metabolites in Subjects With Mild and Moderate Hepatic Impairment Compared With Healthy Subjects
Status:Completed
updateDate:2017-06-08
Ctid:NCT02859207

Link: https://clinicaltrials.gov/ct2/show/NCT02859207

Conditions:Early Alzheimer's Disease
Interventions:E2609
Phase:Phase 1
View More

Title:Study to Evaluate the Safety and Tolerability of a Once Daily Dose of 50 mg E2609 in Healthy Japanese Subjects
Status:Completed
updateDate:2017-04-18
Ctid:NCT03055962

Link: https://clinicaltrials.gov/ct2/show/NCT03055962

Conditions:Healthy Participants
Interventions:Placebo
Phase:Phase 1
Title:Evaluation of E2609 in Subjects With Mild Cognitive Impairment or Mild Dementia Due to Alzheimer's Disease (Study: E2609-A001-101 Amendment 02)
Status:Completed
updateDate:2016-12-30
Ctid:NCT01600859

Link: https://clinicaltrials.gov/ct2/show/NCT01600859

Conditions:Alzheimer's Disease
Interventions:Placebo for E2609
Phase:Phase 1
Title:An Open-label, Single Dose Study to Determine the Metabolism and Elimination of 14CE2609 in Healthy Male Subjects
Status:Completed
updateDate:2016-01-08
Ctid:NCT01975636

Link: https://clinicaltrials.gov/ct2/show/NCT01975636

Conditions:Metabolism and Elimination
Interventions:E2609
Phase:Phase 1
Title:Evaluation of the Safety, Pharmacokinetics, and Pharmacodynamics of Multiple Doses of E2609 in Healthy Subjects
Status:Completed
updateDate:2015-11-03
Ctid:NCT01511783

Link: https://clinicaltrials.gov/ct2/show/NCT01511783

Conditions:Healthy
Interventions:Placebo
Phase:Phase 1
Title:A 3-Part, Open-Label, Drug-Drug Interaction Study of Concomitant Administration of E2609 With Itraconazole, Rifampin, Digoxin, or Donepezil
Status:Completed
updateDate:2015-11-03
Ctid:NCT02055703

Link: https://clinicaltrials.gov/ct2/show/NCT02055703

Conditions:Healthy Subjects
Interventions:donepezil
Phase:Phase 1
Title:Study to Evaluate the Safety, Tolerability, Pharmacokinetics, and Pharmacodynamics of E2609 in Healthy Adult Male Japanese and White Subjects
Status:Completed
updateDate:2015-11-03
Ctid:NCT02207790

Link: https://clinicaltrials.gov/ct2/show/NCT02207790

Conditions:Healthy Subjects
Interventions:Placebo
Phase:Phase 1
Title:A Study to Evaluate the Effects of E2609 on QTc Interval in Healthy Subjects
Status:Completed
updateDate:2015-11-03
Ctid:NCT02222324

Link: https://clinicaltrials.gov/ct2/show/NCT02222324

Conditions:Healthy Subjects
Interventions:Moxifloxacin
Phase:Phase 1
Title:An Study to Determine the Bioavailability of E2609 Tablets Compared to Capsules and the Effect of Food on Absorption
Status:Completed
updateDate:2013-05-22
Ctid:NCT01716897

Link: https://clinicaltrials.gov/ct2/show/NCT01716897

Conditions:Alzheimer's Disease
Interventions:E2609
Phase:Phase 1

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