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(S)-1-Boc-3-aminopiperidine ((S)-(+)-3-Amino-1-boc-piperidine)

(S)-1-Boc-3-aminopiperidine is a biochemical compound that may be utilized as a biomaterial or organic/chemical reagent for biomedical research.
(S)-1-Boc-3-aminopiperidine ((S)-(+)-3-Amino-1-boc-piperidine)
(S)-1-Boc-3-aminopiperidine ((S)-(+)-3-Amino-1-boc-piperidine) Chemical Structure CAS No.: 625471-18-3
Product category: Biochemical Assay Reagents
This product is for research use only, not for human use. We do not sell to patients.
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Product Description
(S)-1-Boc-3-aminopiperidine is a biochemical compound that may be utilized as a biomaterial or organic/chemical reagent for biomedical research.
(S)-1-Boc-3-aminopiperidine (CAS 625471-18-3) is an enantiomerically pure, Boc-protected chiral piperidine derivative with molecular formula C₁₀H₂₀N₂O₂ and molecular weight 200.28 g/mol. It appears as a low melting point solid or liquid (21-25°C) with an optical rotation of +26° to +33° (c=1, DMF). This compound serves as a key chiral building block in pharmaceutical development, particularly for drugs targeting neurological disorders, and is used to prepare selective noncovalent inhibitors of the bacterial cysteine protease IdeS.
Biological Activity I Assay Protocols (From Reference)
Targets
(S)-1-Boc-3-aminopiperidine does not have a defined pharmacological target of its own, as it is a synthetic intermediate rather than a drug substance. However, it is used as a key intermediate in synthesizing various pharmaceuticals, particularly in developing drugs targeting neurological disorders. The compound is also used to prepare selective noncovalent inhibitors of the bacterial cysteine protease IdeS. The Boc-protected piperidine scaffold is a common motif in medicinal chemistry for constructing biologically active compounds.
ln Vitro
In vitro, (S)-1-Boc-3-aminopiperidine is primarily used as a chemical reagent and synthetic intermediate. It is employed in the synthesis of various pharmaceutical compounds that are subsequently tested in in vitro assays. The compound's properties allow it to improve the solubility and absorption of active pharmaceutical ingredients, making it valuable in drug formulation processes. As a chiral building block, it is used in the preparation of enantiomerically pure drug candidates for in vitro screening.
ln Vivo
In vivo activity data for (S)-1-Boc-3-aminopiperidine itself are not available, as the compound is not intended for direct in vivo administration. Rather, it is a precursor used in the synthesis of drug candidates that are subsequently evaluated in animal models. The compound's in vivo relevance is indirect, through the biological activities of the final pharmaceutical compounds derived from it, particularly those targeting neurological disorders and bacterial infections.
Enzyme Assay
For in vitro enzyme/receptor binding studies, (S)-1-Boc-3-aminopiperidine is not typically evaluated as a test compound itself. Instead, it serves as a reagent for the synthesis of test compounds. The compound's properties include a molecular weight of 200.28 g/mol, a melting point of 21-25°C, and a flash point of 122°C. The Boc-protected amine provides a handle for selective deprotection and functionalization in medicinal chemistry.
Cell Assay
For in vitro cell-based experiments, (S)-1-Boc-3-aminopiperidine is used as an intermediate in the synthesis of compounds that are tested in cell viability, proliferation, and cytotoxicity assays. The compound itself is not typically evaluated in cell-based assays. Standard cell culture protocols for test compounds synthesized from this intermediate involve dissolving the final product in DMSO and diluting to working concentrations in appropriate cell culture medium.
Animal Protocol
In vivo animal studies using (S)-1-Boc-3-aminopiperidine are conducted on the final drug compounds synthesized from it, not on the intermediate itself. For pharmaceutical candidates derived from this building block, efficacy studies would typically be performed in mouse models of the relevant disease (e.g., neurological disorder models). Standard in vivo protocols involve administration to rodents via oral gavage or intraperitoneal injection, with appropriate pharmacokinetic and pharmacodynamic endpoints.
ADME/Pharmacokinetics
Pharmacokinetic properties of (S)-1-Boc-3-aminopiperidine as a standalone compound are not characterized in the literature. The compound has a molecular weight of 200.28 g/mol, which is within the favorable range for oral bioavailability. As a Boc-protected amine, it is expected to have moderate lipophilicity. The compound's properties allow it to improve the solubility and absorption of active pharmaceutical ingredients. Empirical pharmacokinetic data are not available for this intermediate compound.
Toxicity/Toxicokinetics
(S)-1-Boc-3-aminopiperidine is a research chemical and should be handled with appropriate laboratory safety precautions. As a piperidine derivative, it may pose risks of skin and eye irritation. The compound has a flash point of 122°C and should be stored in a cool, dry place. Specific LD₅₀ values, acute toxicity classifications, and chronic toxicity data are not available in the public literature. Standard safety practices include the use of personal protective equipment and working in a fume hood.
Additional Infomation
(S)-1-Boc-3-aminopiperidine ((S)-(+)-3-Amino-1-boc-piperidine, CAS 625471-18-3) is primarily a research-grade chemical intermediate, not an FDA-approved pharmaceutical drug. Its primary applications are in pharmaceutical development as a key chiral building block for drugs targeting neurological disorders and as a reagent for preparing inhibitors of bacterial cysteine protease IdeS. The compound's properties allow it to improve the solubility and absorption of active pharmaceutical ingredients. No clinical trials or approved indications exist for this compound. It is intended for laboratory research use only.
These protocols are for reference only. InvivoChem does not independently validate these methods.
Physicochemical Properties
Molecular Formula
C10H20N2O2
Molecular Weight
200.28
Exact Mass
200.152
CAS #
625471-18-3
PubChem CID
1501975
Appearance
Colorless to light yellow liquid(Density:1.02 g/cm3)
Density
1.0±0.1 g/cm3
Boiling Point
277.3±33.0 °C at 760 mmHg
Flash Point
121.5±25.4 °C
Vapour Pressure
0.0±0.6 mmHg at 25°C
Index of Refraction
1.484
LogP
0.71
Hydrogen Bond Donor Count
1
Hydrogen Bond Acceptor Count
3
Rotatable Bond Count
2
Heavy Atom Count
14
Complexity
211
Defined Atom Stereocenter Count
1
SMILES
CC(C)(C)OC(=O)N1CCC[C@@H](C1)N
InChi Key
AKQXKEBCONUWCL-UHFFFAOYSA-N
InChi Code
InChI=1S/C10H20N2O2/c1-10(2,3)14-9(13)12-6-4-5-8(11)7-12/h8H,4-7,11H2,1-3H3
Chemical Name
tert-butyl 3-aminopiperidine-1-carboxylate
HS Tariff Code
2934.99.9001
Storage

Powder      -20°C    3 years

                     4°C     2 years

In solvent   -80°C    6 months

                  -20°C    1 month

Note: This product requires protection from light (avoid light exposure) during transportation and storage.
Shipping Condition
Room temperature (This product is stable at ambient temperature for a few days during ordinary shipping and time spent in Customs)
Solubility Data
Solubility (In Vitro)
DMSO: 100 mg/mL (499.30 mM)
Solubility (In Vivo)
Solubility in Formulation 1: ≥ 2.5 mg/mL (12.48 mM) (saturation unknown) in 10% DMSO + 40% PEG300 + 5% Tween80 + 45% Saline (add these co-solvents sequentially from left to right, and one by one), clear solution.
For example, if 1 mL of working solution is to be prepared, you can add 100 μL of 25.0 mg/mL clear DMSO stock solution to 400 μL PEG300 and mix evenly; then add 50 μL Tween-80 to the above solution and mix evenly; then add 450 μL normal saline to adjust the volume to 1 mL.
Preparation of saline: Dissolve 0.9 g of sodium chloride in 100 mL ddH₂ O to obtain a clear solution.

Solubility in Formulation 2: 2.5 mg/mL (12.48 mM) in 10% DMSO + 90% (20% SBE-β-CD in Saline) (add these co-solvents sequentially from left to right, and one by one), suspension solution; with ultrasonication.
For example, if 1 mL of working solution is to be prepared, you can add 100 μL of 25.0 mg/mL clear DMSO stock solution to 900 μL of 20% SBE-β-CD physiological saline solution and mix evenly.
Preparation of 20% SBE-β-CD in Saline (4°C,1 week): Dissolve 2 g SBE-β-CD in 10 mL saline to obtain a clear solution.

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Solubility in Formulation 3: ≥ 2.5 mg/mL (12.48 mM) (saturation unknown) in 10% DMSO + 90% Corn Oil (add these co-solvents sequentially from left to right, and one by one), clear solution.
For example, if 1 mL of working solution is to be prepared, you can add 100 μL of 25.0 mg/mL clear DMSO stock solution to 900 μL of corn oil and mix evenly.


 (Please use freshly prepared in vivo formulations for optimal results.)
Preparing Stock Solutions 1 mg 5 mg 10 mg
1 mM 4.9930 mL 24.9650 mL 49.9301 mL
5 mM 0.9986 mL 4.9930 mL 9.9860 mL
10 mM 0.4993 mL 2.4965 mL 4.9930 mL

*Note: Please select an appropriate solvent for the preparation of stock solution based on your experiment needs. For most products, DMSO can be used for preparing stock solutions (e.g. 5 mM, 10 mM, or 20 mM concentration); some products with high aqueous solubility may be dissolved in water directly. Solubility information is available at the above Solubility Data section. Once the stock solution is prepared, aliquot it to routine usage volumes and store at -20°C or -80°C. Avoid repeated freeze and thaw cycles.

Calculator

Molarity Calculator allows you to calculate the mass, volume, and/or concentration required for a solution, as detailed below:

  • Calculate the Mass of a compound required to prepare a solution of known volume and concentration
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An example of molarity calculation using the molarity calculator is shown below:
What is the mass of compound required to make a 10 mM stock solution in 5 ml of DMSO given that the molecular weight of the compound is 350.26 g/mol?
  • Enter 350.26 in the Molecular Weight (MW) box
  • Enter 10 in the Concentration box and choose the correct unit (mM)
  • Enter 5 in the Volume box and choose the correct unit (mL)
  • Click the “Calculate” button
  • The answer of 17.513 mg appears in the Mass box. In a similar way, you may calculate the volume and concentration.

Dilution Calculator allows you to calculate how to dilute a stock solution of known concentrations. For example, you may Enter C1, C2 & V2 to calculate V1, as detailed below:

What volume of a given 10 mM stock solution is required to make 25 ml of a 25 μM solution?
Using the equation C1V1 = C2V2, where C1=10 mM, C2=25 μM, V2=25 ml and V1 is the unknown:
  • Enter 10 into the Concentration (Start) box and choose the correct unit (mM)
  • Enter 25 into the Concentration (End) box and select the correct unit (mM)
  • Enter 25 into the Volume (End) box and choose the correct unit (mL)
  • Click the “Calculate” button
  • The answer of 62.5 μL (0.1 ml) appears in the Volume (Start) box
g/mol

Molecular Weight Calculator allows you to calculate the molar mass and elemental composition of a compound, as detailed below:

Note: Chemical formula is case sensitive: C12H18N3O4  c12h18n3o4
Instructions to calculate molar mass (molecular weight) of a chemical compound:
  • To calculate molar mass of a chemical compound, please enter the chemical/molecular formula and click the “Calculate’ button.
Definitions of molecular mass, molecular weight, molar mass and molar weight:
  • Molecular mass (or molecular weight) is the mass of one molecule of a substance and is expressed in the unified atomic mass units (u). (1 u is equal to 1/12 the mass of one atom of carbon-12)
  • Molar mass (molar weight) is the mass of one mole of a substance and is expressed in g/mol.
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Reconstitution Calculator allows you to calculate the volume of solvent required to reconstitute your vial.

  • Enter the mass of the reagent and the desired reconstitution concentration as well as the correct units
  • Click the “Calculate” button
  • The answer appears in the Volume (to add to vial) box
In vivo Formulation Calculator (Clear solution)
Step 1: Enter information below (Recommended: An additional animal to make allowance for loss during the experiment)
Step 2: Enter in vivo formulation (This is only a calculator, not the exact formulation for a specific product. Please contact us first if there is no in vivo formulation in the solubility section.)
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Calculation results

Working concentration mg/mL;

Method for preparing DMSO stock solution mg drug pre-dissolved in μL DMSO (stock solution concentration mg/mL). Please contact us first if the concentration exceeds the DMSO solubility of the batch of drug.

Method for preparing in vivo formulation:Take μL DMSO stock solution, next add μL PEG300, mix and clarify, next addμL Tween 80, mix and clarify, next add μL ddH2O,mix and clarify.

(1) Please be sure that the solution is clear before the addition of next solvent. Dissolution methods like vortex, ultrasound or warming and heat may be used to aid dissolving.
             (2) Be sure to add the solvent(s) in order.

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