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3-Ethynylpyridine

3-Ethynylpyridine is a biochemical compound that could be utilized as a biomaterial or organic/chemical reagent for biomedical research.
3-Ethynylpyridine
3-Ethynylpyridine Chemical Structure CAS No.: 2510-23-8
Product category: Biochemical Assay Reagents
This product is for research use only, not for human use. We do not sell to patients.
Size Price Stock Qty
25g
Other Sizes
Official Supplier of:
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Product Description
3-Ethynylpyridine is a biochemical compound that could be utilized as a biomaterial or organic/chemical reagent for biomedical research. 3-Ethynylpyridine is a click chemical reagent. It contains Alkyne groups and could undergo CuAAc (copper-catalyzed azide-alkyne cycloaddition reaction) with compounds bearing an Azide group.
3-Ethynylpyridine (3-Pyridylacetylene) (CAS 2510-23-8) is a pyridine derivative with a terminal alkyne group at the 3-position. With molecular formula C₇H₅N and molecular weight 103.12 g/mol, it is a useful research chemical. The compound is a click chemistry reagent containing an alkyne group that can undergo copper-catalyzed azide-alkyne cycloaddition (CuAAC) with azide-containing compounds.
Biological Activity I Assay Protocols (From Reference)
Targets
3-Ethynylpyridine does not have a defined pharmacological target of its own, as it is a synthetic intermediate and click chemistry reagent. The compound is used in proteomics research as an alkynyl-substituted pyridine compound and for the preparation of palladium complexes. Its terminal alkyne group enables bioconjugation and labeling applications through click chemistry.
ln Vitro
In vitro, 3-ethynylpyridine is primarily used as a chemical reagent and synthetic intermediate. It is a click chemistry reagent containing an alkyne group that can undergo CuAAC with azide-containing compounds. The compound is used in proteomics research as an alkynyl-substituted pyridine compound and for the preparation of palladium complexes for X-ray crystallography and vibrational spectroscopy studies.
ln Vivo
In vivo activity data for 3-ethynylpyridine itself are not available, as the compound is not intended for direct in vivo administration. Rather, it is a precursor and click chemistry reagent used in the synthesis of bioconjugates and drug candidates that may be subsequently evaluated in animal models. The compound's in vivo relevance is indirect, through the biological activities of the final compounds derived from its ethynylpyridine scaffold.
Enzyme Assay
For in vitro click chemistry reactions, 3-ethynylpyridine is used in CuAAC reactions with azide-containing compounds. Standard protocols involve dissolving the compound in an appropriate solvent (e.g., DMSO, DMF) and reacting it with an azide in the presence of a copper catalyst (e.g., CuSO₄, sodium ascorbate) at room temperature or slightly elevated temperatures. The reaction is monitored by TLC or HPLC. The resulting triazole products can be used for bioconjugation and labeling applications.
Cell Assay
For in vitro cell-based experiments, 3-ethynylpyridine is not typically used directly in cell culture. It is a click chemistry reagent used for bioconjugation and labeling applications. The compound may be used in the synthesis of probes or drug candidates that are subsequently tested in cell-based assays, but it is not added directly to cell cultures as a test compound.
Animal Protocol
In vivo animal studies using 3-ethynylpyridine are conducted on the final compounds synthesized from it, not on the intermediate itself. For bioconjugates or drug candidates derived from this building block, efficacy studies would typically be performed in mouse models of the relevant disease. Standard in vivo protocols involve administration to rodents via oral gavage or intravenous injection, with appropriate pharmacokinetic and pharmacodynamic endpoints.
ADME/Pharmacokinetics
Pharmacokinetic properties of 3-ethynylpyridine as a standalone compound are not characterized in the literature. The compound has a molecular weight of 103.12 g/mol, which is very favorable for oral bioavailability. The terminal alkyne may influence metabolic stability. The pyridine nitrogen may be subject to N-oxidation or other metabolic transformations. Empirical pharmacokinetic data are not available for this intermediate compound.
Toxicity/Toxicokinetics
3-Ethynylpyridine is a research chemical and should be handled with appropriate laboratory safety precautions. As a pyridine derivative, it may cause skin and eye irritation. The compound is for research use only and not for human therapeutic or diagnostic applications. Specific LD₅₀ values, acute toxicity classifications, and chronic toxicity data are not available in the public literature. Standard safety practices include the use of personal protective equipment and working in a fume hood.
Additional Infomation
3-Ethynylpyridine (3-Pyridylacetylene) (CAS 2510-23-8) is primarily a research-grade chemical intermediate and click chemistry reagent, not an FDA-approved pharmaceutical drug. Its primary applications are as a click chemistry reagent for CuAAC reactions with azides, in proteomics research, and for the preparation of palladium complexes. No clinical trials or approved therapeutic indications exist for this compound.
These protocols are for reference only. InvivoChem does not independently validate these methods.
Physicochemical Properties
Molecular Formula
C7H5N
Molecular Weight
103.12
Exact Mass
103.042
CAS #
2510-23-8
PubChem CID
186003
Appearance
Light yellow to light brown solid powder
Density
1.0±0.1 g/cm3
Boiling Point
170.5±13.0 °C at 760 mmHg
Melting Point
39-40 °C(lit.)
Flash Point
57.5±12.4 °C
Vapour Pressure
1.9±0.3 mmHg at 25°C
Index of Refraction
1.543
LogP
0.91
Hydrogen Bond Donor Count
0
Hydrogen Bond Acceptor Count
1
Rotatable Bond Count
1
Heavy Atom Count
8
Complexity
109
Defined Atom Stereocenter Count
0
SMILES
C#CC1=CC=CN=C1
InChi Key
CLRPXACRDTXENY-UHFFFAOYSA-N
InChi Code
InChI=1S/C7H5N/c1-2-7-4-3-5-8-6-7/h1,3-6H
Chemical Name
3-ethynylpyridine
HS Tariff Code
2934.99.9001
Storage

Powder      -20°C    3 years

                     4°C     2 years

In solvent   -80°C    6 months

                  -20°C    1 month

Shipping Condition
Room temperature (This product is stable at ambient temperature for a few days during ordinary shipping and time spent in Customs)
Solubility Data
Solubility (In Vitro)
DMSO: 100 mg/mL (969.74 mM)
Solubility (In Vivo)
Solubility in Formulation 1: ≥ 2.5 mg/mL (24.24 mM) (saturation unknown) in 10% DMSO + 40% PEG300 + 5% Tween80 + 45% Saline (add these co-solvents sequentially from left to right, and one by one), clear solution.
For example, if 1 mL of working solution is to be prepared, you can add 100 μL of 25.0 mg/mL clear DMSO stock solution to 400 μL PEG300 and mix evenly; then add 50 μL Tween-80 to the above solution and mix evenly; then add 450 μL normal saline to adjust the volume to 1 mL.
Preparation of saline: Dissolve 0.9 g of sodium chloride in 100 mL ddH₂ O to obtain a clear solution.

Solubility in Formulation 2: ≥ 2.5 mg/mL (24.24 mM) (saturation unknown) in 10% DMSO + 90% (20% SBE-β-CD in Saline) (add these co-solvents sequentially from left to right, and one by one), clear solution.
For example, if 1 mL of working solution is to be prepared, you can add 100 μL of 25.0 mg/mL clear DMSO stock solution to 900 μL of 20% SBE-β-CD physiological saline solution and mix evenly.
Preparation of 20% SBE-β-CD in Saline (4°C,1 week): Dissolve 2 g SBE-β-CD in 10 mL saline to obtain a clear solution.

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Solubility in Formulation 3: ≥ 2.5 mg/mL (24.24 mM) (saturation unknown) in 10% DMSO + 90% Corn Oil (add these co-solvents sequentially from left to right, and one by one), clear solution.
For example, if 1 mL of working solution is to be prepared, you can add 100 μL of 25.0 mg/mL clear DMSO stock solution to 900 μL of corn oil and mix evenly.


 (Please use freshly prepared in vivo formulations for optimal results.)
Preparing Stock Solutions 1 mg 5 mg 10 mg
1 mM 9.6974 mL 48.4872 mL 96.9744 mL
5 mM 1.9395 mL 9.6974 mL 19.3949 mL
10 mM 0.9697 mL 4.8487 mL 9.6974 mL

*Note: Please select an appropriate solvent for the preparation of stock solution based on your experiment needs. For most products, DMSO can be used for preparing stock solutions (e.g. 5 mM, 10 mM, or 20 mM concentration); some products with high aqueous solubility may be dissolved in water directly. Solubility information is available at the above Solubility Data section. Once the stock solution is prepared, aliquot it to routine usage volumes and store at -20°C or -80°C. Avoid repeated freeze and thaw cycles.

Calculator

Molarity Calculator allows you to calculate the mass, volume, and/or concentration required for a solution, as detailed below:

  • Calculate the Mass of a compound required to prepare a solution of known volume and concentration
  • Calculate the Volume of solution required to dissolve a compound of known mass to a desired concentration
  • Calculate the Concentration of a solution resulting from a known mass of compound in a specific volume
An example of molarity calculation using the molarity calculator is shown below:
What is the mass of compound required to make a 10 mM stock solution in 5 ml of DMSO given that the molecular weight of the compound is 350.26 g/mol?
  • Enter 350.26 in the Molecular Weight (MW) box
  • Enter 10 in the Concentration box and choose the correct unit (mM)
  • Enter 5 in the Volume box and choose the correct unit (mL)
  • Click the “Calculate” button
  • The answer of 17.513 mg appears in the Mass box. In a similar way, you may calculate the volume and concentration.

Dilution Calculator allows you to calculate how to dilute a stock solution of known concentrations. For example, you may Enter C1, C2 & V2 to calculate V1, as detailed below:

What volume of a given 10 mM stock solution is required to make 25 ml of a 25 μM solution?
Using the equation C1V1 = C2V2, where C1=10 mM, C2=25 μM, V2=25 ml and V1 is the unknown:
  • Enter 10 into the Concentration (Start) box and choose the correct unit (mM)
  • Enter 25 into the Concentration (End) box and select the correct unit (mM)
  • Enter 25 into the Volume (End) box and choose the correct unit (mL)
  • Click the “Calculate” button
  • The answer of 62.5 μL (0.1 ml) appears in the Volume (Start) box
g/mol

Molecular Weight Calculator allows you to calculate the molar mass and elemental composition of a compound, as detailed below:

Note: Chemical formula is case sensitive: C12H18N3O4  c12h18n3o4
Instructions to calculate molar mass (molecular weight) of a chemical compound:
  • To calculate molar mass of a chemical compound, please enter the chemical/molecular formula and click the “Calculate’ button.
Definitions of molecular mass, molecular weight, molar mass and molar weight:
  • Molecular mass (or molecular weight) is the mass of one molecule of a substance and is expressed in the unified atomic mass units (u). (1 u is equal to 1/12 the mass of one atom of carbon-12)
  • Molar mass (molar weight) is the mass of one mole of a substance and is expressed in g/mol.
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Reconstitution Calculator allows you to calculate the volume of solvent required to reconstitute your vial.

  • Enter the mass of the reagent and the desired reconstitution concentration as well as the correct units
  • Click the “Calculate” button
  • The answer appears in the Volume (to add to vial) box
In vivo Formulation Calculator (Clear solution)
Step 1: Enter information below (Recommended: An additional animal to make allowance for loss during the experiment)
Step 2: Enter in vivo formulation (This is only a calculator, not the exact formulation for a specific product. Please contact us first if there is no in vivo formulation in the solubility section.)
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Calculation results

Working concentration mg/mL;

Method for preparing DMSO stock solution mg drug pre-dissolved in μL DMSO (stock solution concentration mg/mL). Please contact us first if the concentration exceeds the DMSO solubility of the batch of drug.

Method for preparing in vivo formulation:Take μL DMSO stock solution, next add μL PEG300, mix and clarify, next addμL Tween 80, mix and clarify, next add μL ddH2O,mix and clarify.

(1) Please be sure that the solution is clear before the addition of next solvent. Dissolution methods like vortex, ultrasound or warming and heat may be used to aid dissolving.
             (2) Be sure to add the solvent(s) in order.

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