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(R)-3-Fluoropyrrolidine hydrochloride

(R)-3-Fluoropyrrolidine HCl is a biochemical compound that could be utilized as a biomaterial or organic/chemical reagent for biomedical research.
(R)-3-Fluoropyrrolidine hydrochloride
(R)-3-Fluoropyrrolidine hydrochloride Chemical Structure CAS No.: 136725-55-8
Product category: Biochemical Assay Reagents
This product is for research use only, not for human use. We do not sell to patients.
Size Price Stock Qty
10g
25g
Other Sizes
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Product Description
(R)-3-Fluoropyrrolidine HCl is a biochemical compound that could be utilized as a biomaterial or organic/chemical reagent for biomedical research.
(R)-3-Fluoropyrrolidine hydrochloride (CAS 136725-55-8) is a chiral, fluorinated heterocyclic building block with molecular formula C₄H₉ClFN and molecular weight 125.57 g/mol. It is characterized by the presence of a fluorine atom on the pyrrolidine ring, which enhances its binding affinity to various biological targets. It is a biochemical reagent used as an intermediate in organic synthesis.
Biological Activity I Assay Protocols (From Reference)
Targets
(R)-3-Fluoropyrrolidine hydrochloride does not have a defined pharmacological target of its own, as it is a synthetic intermediate. It is used in the synthesis of hVanin-1 inhibitors (Compound X20) for the research of inflammatory bowel disease. As a chiral fluorinated pyrrolidine, it serves as a building block for various pharmaceuticals and agrochemicals.
ln Vitro
In vitro, (R)-3-fluoropyrrolidine hydrochloride is primarily used as a chemical reagent and synthetic intermediate. It is used in the synthesis of hVanin-1 inhibitors. As a chiral fluorinated pyrrolidine, it is a valuable building block for the construction of drug-like molecules, particularly those targeting enzymes and receptors where fluorine enhances binding affinity.
ln Vivo
In vivo activity data for (R)-3-fluoropyrrolidine hydrochloride itself are not available, as the compound is not intended for direct in vivo administration. Rather, it is a precursor used in the synthesis of hVanin-1 inhibitors and other drug candidates that are subsequently evaluated in animal models.
Enzyme Assay
For in vitro chemical synthesis, (R)-3-fluoropyrrolidine hydrochloride is used as a building block for the preparation of various compounds. Standard protocols involve reacting the compound with appropriate reagents to introduce the fluoropyrrolidine moiety into target molecules. The hydrochloride salt can be neutralized to the free base for further reactions.
Cell Assay
For in vitro cell-based experiments, (R)-3-fluoropyrrolidine hydrochloride is used as an intermediate in the synthesis of compounds that are tested in cell viability, proliferation, and cytotoxicity assays. The compound itself is not typically evaluated in cell-based assays. Standard cell culture protocols for test compounds synthesized from this intermediate involve dissolving the final product in DMSO.
Animal Protocol
In vivo animal studies using (R)-3-fluoropyrrolidine hydrochloride are conducted on the final drug compounds synthesized from it, not on the intermediate itself. For hVanin-1 inhibitors derived from this building block, efficacy studies would typically be performed in mouse models of inflammatory bowel disease.
ADME/Pharmacokinetics
Pharmacokinetic properties of (R)-3-fluoropyrrolidine hydrochloride as a standalone compound are not characterized in the literature. The compound has a molecular weight of 125.57 g/mol, which is favorable for oral bioavailability. The fluorine atom may influence metabolic stability and lipophilicity.
Toxicity/Toxicokinetics
(R)-3-Fluoropyrrolidine hydrochloride is a research chemical and should be handled with appropriate laboratory safety precautions. As a hydrochloride salt, it may cause skin and eye irritation. The compound is for research use only and not for human therapeutic or diagnostic applications.
References

[1]. Discovery of Thiazole Carboxamides as Novel Vanin-1 Inhibitors for Inflammatory Bowel Disease Treatment. J Med Chem. 2024 Nov 28;67(22):20372-20398.

Additional Infomation
(R)-3-Fluoropyrrolidine hydrochloride (CAS 136725-55-8) is primarily a research-grade chemical intermediate, not an FDA-approved pharmaceutical drug. Its primary applications are as a building block for the synthesis of hVanin-1 inhibitors for inflammatory bowel disease research and as an intermediate for various pharmaceuticals and agrochemicals.
These protocols are for reference only. InvivoChem does not independently validate these methods.
Physicochemical Properties
Molecular Formula
C4H9CLFN
Molecular Weight
125.57
Exact Mass
125.04
CAS #
136725-55-8
PubChem CID
2759162
Appearance
White to light brown solid
Boiling Point
91ºC at 760 mmHg
Melting Point
179-186ºC
Flash Point
8.8ºC
Vapour Pressure
8.27mmHg at 25°C
LogP
1.448
Hydrogen Bond Donor Count
2
Hydrogen Bond Acceptor Count
2
Rotatable Bond Count
0
Heavy Atom Count
7
Complexity
46.8
Defined Atom Stereocenter Count
1
SMILES
Cl[H].F[C@@]1([H])C([H])([H])N([H])C([H])([H])C1([H])[H]
InChi Key
LENYOXXELREKGZ-PGMHMLKASA-N
InChi Code
InChI=1S/C4H8FN.ClH/c5-4-1-2-6-3-4;/h4,6H,1-3H2;1H/t4-;/m1./s1
Chemical Name
(3R)-3-fluoropyrrolidine;hydrochloride
HS Tariff Code
2934.99.9001
Storage

Powder      -20°C    3 years

                     4°C     2 years

In solvent   -80°C    6 months

                  -20°C    1 month

Note: Please store this product in a sealed and protected environment, avoid exposure to moisture.
Shipping Condition
Room temperature (This product is stable at ambient temperature for a few days during ordinary shipping and time spent in Customs)
Solubility Data
Solubility (In Vitro)
DMSO: ~100 mg/mL (~796.4 mM; with ultrasonication)
Solubility (In Vivo)
Solubility in Formulation 1: ≥ 2.5 mg/mL (19.91 mM) (saturation unknown) in 10% DMSO + 40% PEG300 + 5% Tween-80 + 45% Saline (add these co-solvents sequentially from left to right, and one by one), Clear solution.
For example, if 1 mL of working solution is to be prepared, you can add 100 μL of DMSO stock solution (25.0 mg/mL) to 400 μL of PEG300 and mix well; then add 50 μL of Tween-80 and mix well; finally add 450 μL of physiological saline and adjust the volume to 1 mL.
Preparation of saline: Dissolve 0.9 g of sodium chloride in 100 mL ddH₂ O to obtain a clear solution.

Solubility in Formulation 2: ≥ 2.5 mg/mL (19.91 mM) (saturation unknown) in 10% DMSO + 90% (20% SBE-β-CD in Saline) (add these co-solvents sequentially from left to right, and one by one), Clear solution.
For example, if 1 mL of working solution is to be prepared, you can add 100 μL of DMSO stock solution (25.0 mg/mL) to 900 μL of 20% SBE-β-CD saline and mix well.
Preparation of 20% SBE-β-CD in Saline (4°C,1 week): Dissolve 2 g SBE-β-CD in 10 mL saline to obtain a clear solution.

Solubility in Formulation 3: ≥ 2.5 mg/mL (19.91 mM) (saturation unknown) in 10% DMSO + 90% Corn Oil (add these co-solvents sequentially from left to right, and one by one), Clear solution.
For example, if 1 mL of working solution is to be prepared, you can add 100 μL of DMSO stock solution (25.0 mg/mL) to 900 μL of corn oil and mix well.

 (Please use freshly prepared in vivo formulations for optimal results.)
Preparing Stock Solutions 1 mg 5 mg 10 mg
1 mM 7.9637 mL 39.8184 mL 79.6369 mL
5 mM 1.5927 mL 7.9637 mL 15.9274 mL
10 mM 0.7964 mL 3.9818 mL 7.9637 mL

*Note: Please select an appropriate solvent for the preparation of stock solution based on your experiment needs. For most products, DMSO can be used for preparing stock solutions (e.g. 5 mM, 10 mM, or 20 mM concentration); some products with high aqueous solubility may be dissolved in water directly. Solubility information is available at the above Solubility Data section. Once the stock solution is prepared, aliquot it to routine usage volumes and store at -20°C or -80°C. Avoid repeated freeze and thaw cycles.

Calculator

Molarity Calculator allows you to calculate the mass, volume, and/or concentration required for a solution, as detailed below:

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An example of molarity calculation using the molarity calculator is shown below:
What is the mass of compound required to make a 10 mM stock solution in 5 ml of DMSO given that the molecular weight of the compound is 350.26 g/mol?
  • Enter 350.26 in the Molecular Weight (MW) box
  • Enter 10 in the Concentration box and choose the correct unit (mM)
  • Enter 5 in the Volume box and choose the correct unit (mL)
  • Click the “Calculate” button
  • The answer of 17.513 mg appears in the Mass box. In a similar way, you may calculate the volume and concentration.

Dilution Calculator allows you to calculate how to dilute a stock solution of known concentrations. For example, you may Enter C1, C2 & V2 to calculate V1, as detailed below:

What volume of a given 10 mM stock solution is required to make 25 ml of a 25 μM solution?
Using the equation C1V1 = C2V2, where C1=10 mM, C2=25 μM, V2=25 ml and V1 is the unknown:
  • Enter 10 into the Concentration (Start) box and choose the correct unit (mM)
  • Enter 25 into the Concentration (End) box and select the correct unit (mM)
  • Enter 25 into the Volume (End) box and choose the correct unit (mL)
  • Click the “Calculate” button
  • The answer of 62.5 μL (0.1 ml) appears in the Volume (Start) box
g/mol

Molecular Weight Calculator allows you to calculate the molar mass and elemental composition of a compound, as detailed below:

Note: Chemical formula is case sensitive: C12H18N3O4  c12h18n3o4
Instructions to calculate molar mass (molecular weight) of a chemical compound:
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Definitions of molecular mass, molecular weight, molar mass and molar weight:
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  • Molar mass (molar weight) is the mass of one mole of a substance and is expressed in g/mol.
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Reconstitution Calculator allows you to calculate the volume of solvent required to reconstitute your vial.

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  • The answer appears in the Volume (to add to vial) box
In vivo Formulation Calculator (Clear solution)
Step 1: Enter information below (Recommended: An additional animal to make allowance for loss during the experiment)
Step 2: Enter in vivo formulation (This is only a calculator, not the exact formulation for a specific product. Please contact us first if there is no in vivo formulation in the solubility section.)
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Calculation results

Working concentration: mg/mL;

Method for preparing DMSO stock solution: mg drug pre-dissolved in μL DMSO (stock solution concentration mg/mL). Please contact us first if the concentration exceeds the DMSO solubility of the batch of drug.

Method for preparing in vivo formulation::Take μL DMSO stock solution, next add μL PEG300, mix and clarify, next addμL Tween 80, mix and clarify, next add μL ddH2O,mix and clarify.

(1) Please be sure that the solution is clear before the addition of next solvent. Dissolution methods like vortex, ultrasound or warming and heat may be used to aid dissolving.
             (2) Be sure to add the solvent(s) in order.

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