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N-[(9H-Fluoren-9-ylmethoxy)carbonyl]-N-methyl-D-phenylalanine

Cat No.:V67893 Purity: ≥98%
N-[(9H-Fluoren-9-ylmethoxy)carbonyl]-N-methyl-D-phenylalanine is a phenylalanine analogue.
N-[(9H-Fluoren-9-ylmethoxy)carbonyl]-N-methyl-D-phenylalanine
N-[(9H-Fluoren-9-ylmethoxy)carbonyl]-N-methyl-D-phenylalanine Chemical Structure CAS No.: 138775-05-0
Product category: Amino Acid Derivatives
This product is for research use only, not for human use. We do not sell to patients.
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Product Description
N-[(9H-Fluoren-9-ylmethoxy)carbonyl]-N-methyl-D-phenylalanine is a phenylalanine analogue.
N-[(9H-Fluoren-9-ylmethoxy)carbonyl]-N-methyl-D-phenylalanine (CAS 138775-05-0), also known as Fmoc-N-methyl-D-phenylalanine or Fmoc-N-Me-D-Phe-OH, is a phenylalanine derivative featuring an Fmoc protecting group on the amino functionality and an N-methyl substituent. It has a molecular formula of C₂₅H₂₃NO₄ and a molecular weight of 401.45 g/mol. The compound is a D-amino acid analogue used as a building block in Fmoc-based solid-phase peptide synthesis (SPPS). The Fmoc protecting group allows for selective deprotection under mild basic conditions (e.g., piperidine), which is a key feature in Fmoc-based SPPS. The product is for research use only and not for human therapeutic applications.
Biological Activity I Assay Protocols (From Reference)
Targets
As an amino acid derivative, Fmoc-N-methyl-D-phenylalanine does not have a defined primary drug target in the context of therapeutic development. However, as an N-methylated D-phenylalanine analogue, it may be used in research to study peptide conformation, protein-protein interactions, and enzyme-substrate recognition. N-methylation of amino acids can introduce conformational constraints and increase peptide stability against proteolysis. D-Amino acid-containing peptides can exhibit increased resistance to proteolysis and altered receptor binding profiles compared to their L-counterparts. The compound can serve as a building block for synthesizing N-methylated D-phenylalanine-containing peptides for structure-activity relationship studies.
ln Vitro
Commercial ergot supplements have been made from amino acids and their derivatives. They affect the release of anabolic hormones, the availability of fuel for activity, the ability to think clearly under pressure, and the prevention of muscular damage brought on by exertion. They are regarded as advantageous synergistic food ingredients [1].
In vitro studies on N-methylated amino acid derivatives have demonstrated their capacity to influence the release of anabolic hormones, modulate fuel availability for cellular activity, enhance mental performance under stress-related conditions, and prevent exercise-induced muscle damage. As an N-methyl-D-phenylalanine derivative, this compound may be used in cell-based assays to investigate the effects of N-methylation on peptide stability, receptor binding, and biological activity. The compound can also be utilized in studies examining the role of N-methylation in modulating peptide conformation and function. The D-configuration may influence the compound's interactions with enzymes and receptors compared to the L-enantiomer.
ln Vivo
In vivo studies on D-amino acid derivatives have shown that they affect the release of anabolic hormones, the availability of fuel for activity, the ability to think clearly under pressure, and the prevention of muscular damage brought on by exertion. As a protected N-methyl-D-phenylalanine derivative, this compound may be administered in animal studies to evaluate the effects of N-methylated D-amino acid-containing peptides on biological systems. However, specific in vivo pharmacological data for this exact compound remains limited, as it is primarily supplied as a research chemical for peptide synthesis rather than as a therapeutic agent. The Fmoc group would likely be cleaved in vivo to release N-methyl-D-phenylalanine.
Enzyme Assay
Non-cell-based enzyme or receptor binding assays for this compound typically involve studies with purified proteases or peptidases to evaluate the effects of N-methylation and D-configuration on proteolytic stability. Standard protocols include incubating varying concentrations of the test compound with the enzyme source in appropriate buffer systems, followed by measurement of enzymatic degradation using HPLC or mass spectrometry. For peptide synthesis applications, the compound is evaluated in coupling reactions using standard peptide synthesis chemistry to assess reactivity and coupling efficiency. The Fmoc protecting group allows for selective deprotection under mild basic conditions (e.g., piperidine).
Cell Assay
Cell-based assays for this N-methyl-D-phenylalanine derivative typically utilize mammalian cell lines to evaluate compound uptake, cytotoxicity, and effects on cellular metabolism. Standard protocols involve culturing cells in appropriate media at 37°C in 5% CO₂, followed by treatment with varying concentrations of the compound (typically 0.1-100 μM) for 24-72 hours. Cell viability is assessed using MTT or CCK-8 assays. The compound's effects on peptide stability can be studied using cell lysates or conditioned media to assess proteolytic degradation. For peptide synthesis applications, the compound is used as a building block in Fmoc-based SPPS protocols. The Fmoc group is removed with piperidine after coupling.
Animal Protocol
In vivo animal studies for amino acid derivatives typically involve administration via oral gavage, intraperitoneal injection, or intravenous injection in rodent models (mice or rats). Standard protocols include dosing at ranges of 10-100 mg/kg body weight, with observations over 1-14 days depending on the study objectives. For studies evaluating the effects of N-methylated D-amino acid-containing peptides, animals may be administered peptide formulations and monitored for therapeutic efficacy or pharmacokinetics. Pharmacodynamic assessments may include blood sampling for peptide analysis, tissue collection for histopathological examination, and monitoring of body weight. All animal studies must comply with institutional ethical guidelines.
ADME/Pharmacokinetics
Pharmacokinetic properties for this Fmoc-protected N-methyl-D-phenylalanine derivative can be inferred from structurally related compounds. As a medium-sized molecule (molecular weight 401.45 g/mol), it is expected to have moderate bioavailability. The Fmoc protecting group is likely to be cleaved in vivo to release the active N-methyl-D-phenylalanine. The compound shows moderate solubility in organic solvents such as DMSO and can be formulated for in vitro studies. For in vivo administration, formulations using suitable co-solvent systems may be employed. The compound should be stored as powder at -20°C for long-term preservation. Definitive PK parameters require formal studies.
Toxicity/Toxicokinetics
Potential toxicological data for this specific compound are limited as it is supplied for research use only. The compound may cause skin and serious eye irritation. Appropriate safety precautions should be observed during handling, including the use of personal protective equipment and work in well-ventilated areas. Acute toxicity studies in animal models would be required to establish LD₅₀ values and no-observed-adverse-effect levels. For in vitro cytotoxicity assessment, the compound can be tested in mammalian cell lines using standard MTT or LDH release assays. The compound is for research use only and not intended for human therapeutic applications.
References

[1]. Effects of amino acid derivatives on physical, mental, and physiological activities. Crit Rev Food Sci Nutr. 2015;55(13):1793-817.

Additional Infomation
Fmoc-N-methyl-D-phenylalanine is a phenylalanine derivative featuring an Fmoc protecting group on the amino functionality and an N-methyl substituent. N-methylation of amino acids can introduce conformational constraints and increase peptide stability against proteolysis. This compound is used as a building block in Fmoc-based solid-phase peptide synthesis (SPPS) for introducing N-methylated D-phenylalanine residues into peptide sequences for pharmaceutical manufacturing and structure-activity relationship studies. It is not an approved drug and has not undergone clinical trials.
These protocols are for reference only. InvivoChem does not independently validate these methods.
Physicochemical Properties
Molecular Formula
C25H23NO4
Molecular Weight
401.45
Exact Mass
401.162
CAS #
138775-05-0
PubChem CID
978357
Appearance
White to off-white solid powder
Density
1.3±0.1 g/cm3
Boiling Point
595.4±39.0 °C at 760 mmHg
Flash Point
313.9±27.1 °C
Vapour Pressure
0.0±1.8 mmHg at 25°C
Index of Refraction
1.629
LogP
5.89
Hydrogen Bond Donor Count
1
Hydrogen Bond Acceptor Count
4
Rotatable Bond Count
7
Heavy Atom Count
30
Complexity
580
Defined Atom Stereocenter Count
1
SMILES
O(C(N(C([H])([H])[H])[C@@]([H])(C(=O)O[H])C([H])([H])C1C([H])=C([H])C([H])=C([H])C=1[H])=O)C([H])([H])C1([H])C2=C([H])C([H])=C([H])C([H])=C2C2=C([H])C([H])=C([H])C([H])=C12
InChi Key
GBROUWPNYVBLFO-HSZRJFAPSA-N
InChi Code
InChI=1S/C25H23NO4/c1-26(23(24(27)28)15-17-9-3-2-4-10-17)25(29)30-16-22-20-13-7-5-11-18(20)19-12-6-8-14-21(19)22/h2-14,22-23H,15-16H2,1H3,(H,27,28)/t23-/m1/s1
Chemical Name
(2R)-2-[9H-fluoren-9-ylmethoxycarbonyl(methyl)amino]-3-phenylpropanoic acid
HS Tariff Code
2934.99.9001
Storage

Powder      -20°C    3 years

                     4°C     2 years

In solvent   -80°C    6 months

                  -20°C    1 month

Shipping Condition
Room temperature (This product is stable at ambient temperature for a few days during ordinary shipping and time spent in Customs)
Solubility Data
Solubility (In Vitro)
DMSO: 100 mg/mL (249.10 mM)
Solubility (In Vivo)
Solubility in Formulation 1: ≥ 2.5 mg/mL (6.23 mM) (saturation unknown) in 10% DMSO + 40% PEG300 + 5% Tween80 + 45% Saline (add these co-solvents sequentially from left to right, and one by one), clear solution.
For example, if 1 mL of working solution is to be prepared, you can add 100 μL of 25.0 mg/mL clear DMSO stock solution to 400 μL PEG300 and mix evenly; then add 50 μL Tween-80 to the above solution and mix evenly; then add 450 μL normal saline to adjust the volume to 1 mL.
Preparation of saline: Dissolve 0.9 g of sodium chloride in 100 mL ddH₂ O to obtain a clear solution.

Solubility in Formulation 2: ≥ 2.5 mg/mL (6.23 mM) (saturation unknown) in 10% DMSO + 90% (20% SBE-β-CD in Saline) (add these co-solvents sequentially from left to right, and one by one), clear solution.
For example, if 1 mL of working solution is to be prepared, you can add 100 μL of 25.0 mg/mL clear DMSO stock solution to 900 μL of 20% SBE-β-CD physiological saline solution and mix evenly.
Preparation of 20% SBE-β-CD in Saline (4°C,1 week): Dissolve 2 g SBE-β-CD in 10 mL saline to obtain a clear solution.

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Solubility in Formulation 3: ≥ 2.5 mg/mL (6.23 mM) (saturation unknown) in 10% DMSO + 90% Corn Oil (add these co-solvents sequentially from left to right, and one by one), clear solution.
For example, if 1 mL of working solution is to be prepared, you can add 100 μL of 25.0 mg/mL clear DMSO stock solution to 900 μL of corn oil and mix evenly.


 (Please use freshly prepared in vivo formulations for optimal results.)
Preparing Stock Solutions 1 mg 5 mg 10 mg
1 mM 2.4910 mL 12.4549 mL 24.9097 mL
5 mM 0.4982 mL 2.4910 mL 4.9819 mL
10 mM 0.2491 mL 1.2455 mL 2.4910 mL

*Note: Please select an appropriate solvent for the preparation of stock solution based on your experiment needs. For most products, DMSO can be used for preparing stock solutions (e.g. 5 mM, 10 mM, or 20 mM concentration); some products with high aqueous solubility may be dissolved in water directly. Solubility information is available at the above Solubility Data section. Once the stock solution is prepared, aliquot it to routine usage volumes and store at -20°C or -80°C. Avoid repeated freeze and thaw cycles.

Calculator

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An example of molarity calculation using the molarity calculator is shown below:
What is the mass of compound required to make a 10 mM stock solution in 5 ml of DMSO given that the molecular weight of the compound is 350.26 g/mol?
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  • The answer of 17.513 mg appears in the Mass box. In a similar way, you may calculate the volume and concentration.

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What volume of a given 10 mM stock solution is required to make 25 ml of a 25 μM solution?
Using the equation C1V1 = C2V2, where C1=10 mM, C2=25 μM, V2=25 ml and V1 is the unknown:
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  • The answer of 62.5 μL (0.1 ml) appears in the Volume (Start) box
g/mol

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Note: Chemical formula is case sensitive: C12H18N3O4  c12h18n3o4
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Definitions of molecular mass, molecular weight, molar mass and molar weight:
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In vivo Formulation Calculator (Clear solution)
Step 1: Enter information below (Recommended: An additional animal to make allowance for loss during the experiment)
Step 2: Enter in vivo formulation (This is only a calculator, not the exact formulation for a specific product. Please contact us first if there is no in vivo formulation in the solubility section.)
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Calculation results

Working concentration mg/mL;

Method for preparing DMSO stock solution mg drug pre-dissolved in μL DMSO (stock solution concentration mg/mL). Please contact us first if the concentration exceeds the DMSO solubility of the batch of drug.

Method for preparing in vivo formulation:Take μL DMSO stock solution, next add μL PEG300, mix and clarify, next addμL Tween 80, mix and clarify, next add μL ddH2O,mix and clarify.

(1) Please be sure that the solution is clear before the addition of next solvent. Dissolution methods like vortex, ultrasound or warming and heat may be used to aid dissolving.
             (2) Be sure to add the solvent(s) in order.

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