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5-Bromoindole

Cat No.:V64277 Purity: ≥98%
5-Bromoindole is a chemical intermediate that may be utilized in the preparation /synthesis of GSK-3 inhibitors and anti-cancer active molecules.
5-Bromoindole
5-Bromoindole Chemical Structure CAS No.: 10075-50-0
Product category: Others 12
This product is for research use only, not for human use. We do not sell to patients.
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Product Description
5-Bromoindole is a chemical intermediate that may be utilized in the preparation /synthesis of GSK-3 inhibitors and anti-cancer active molecules.
5-Bromoindole is a chemical intermediate with the molecular formula C8H6BrN. It is an important building block in organic synthesis, particularly for the preparation of pharmaceuticals and agrochemicals. This compound features an indole core with a bromine substituent at the 5-position, which allows for further functionalization through cross-coupling reactions. It serves as a precursor for the synthesis of various bioactive molecules, including GSK-3 inhibitors and anticancer agents. Its versatility makes it a staple in medicinal chemistry laboratories.
Biological Activity I Assay Protocols (From Reference)
Targets
5-Bromoindole itself does not have a specific biological target, as it is a synthetic intermediate rather than a drug. Its primary role is to provide the indole scaffold, which is a common pharmacophore in many biologically active compounds. The indole nucleus is found in numerous natural products and synthetic drugs, and the bromine atom allows for late-stage diversification via palladium-catalyzed couplings. The compound is not designed to interact with biological receptors or enzymes.
ln Vitro
Biological in vitro activity is not applicable for 5-Bromoindole, as it is not a pharmacologically active agent. Its "activity" is chemical, referring to its reactivity in transformations such as Suzuki-Miyaura, Buchwald-Hartwig, and Heck reactions. These reactions enable the attachment of various substituents to the indole ring, generating libraries of compounds that are subsequently screened for biological activity. No in vitro potency or efficacy data exist for this intermediate.
ln Vivo
No in vivo activity is reported for 5-Bromoindole, as it is not a therapeutic agent. Its purpose is to serve as a building block for the synthesis of drugs, which are then tested in vivo. For instance, GSK-3 inhibitors derived from 5-Bromoindole are evaluated in animal models for their effects on neurological disorders or cancer. The intermediate itself is never administered to animals for any investigative purpose.
Enzyme Assay
In a typical synthetic procedure, 5-Bromoindole is used as a substrate in cross-coupling reactions. For example, in a Suzuki-Miyaura coupling, it is reacted with an aryl boronic acid in the presence of a palladium catalyst and a base, typically in a solvent like dioxane or DMF, under an inert atmosphere. The reaction is heated to facilitate coupling, and the progress is monitored by TLC or HPLC. The product is then isolated by extraction and purified by column chromatography to yield the desired biaryl indole derivative.
Cell Assay
Cell-based assays are not conducted with 5-Bromoindole, as it is not a biologically active compound. It is used exclusively in chemical synthesis to produce molecules that are later tested in cellular models. For example, a library of indole-based kinase inhibitors synthesized from this intermediate can be screened for their effects on cancer cell proliferation. The intermediate itself is not added to cell culture media.
Animal Protocol
Animal studies are not performed with 5-Bromoindole, as it is not a drug candidate. Its role is limited to being a precursor for the synthesis of potential therapeutics. Those final compounds, once synthesized, may be evaluated in animal models for pharmacokinetics, efficacy, and safety. The intermediate is never dosed to animals.
ADME/Pharmacokinetics
Pharmacokinetic properties are irrelevant for 5-Bromoindole, as it is not a therapeutic agent. Its physical properties include a molecular weight of 196.04 g/mol and a melting point of 90-92°C. It appears as a white to light brown solid and is soluble in organic solvents. Its stability under standard storage conditions is well documented. No absorption, distribution, metabolism, or excretion data are available, as it is not intended for biological exposure.
Toxicity/Toxicokinetics
Toxicological data for 5-Bromoindole are not extensively detailed in public literature, but as a chemical reagent, it should be handled with care. It may cause skin and eye irritation, and inhalation of dust should be avoided. Standard laboratory safety practices, including the use of gloves, goggles, and a fume hood, are recommended. A safety data sheet (SDS) should be consulted for comprehensive hazard information before handling.
References

[1]. Characterization of maleimide-based glycogen synthase kinase-3 (GSK-3) inhibitors as stimulators of steroidogenesis. J Med Chem. 2013 Jun 27;56(12):5115-29.

[2]. Synthesis, Anti-Cancer and Anti-Migratory Evaluation of 3,6-Dibromocarbazole and 5-Bromoindole Derivatives. Molecules. 2019 Jul 24;24(15):2686.

Additional Infomation
5-Bromoindole is a bromoindole.
5-Bromoindole is a versatile and widely used building block in medicinal chemistry. Its indole core is a privileged structure in drug discovery, found in many approved drugs and natural products. The bromine substituent allows for facile diversification, enabling the synthesis of diverse compound libraries for biological screening. It is commonly used in the development of kinase inhibitors, antiviral agents, and anticancer drugs. It is not approved for clinical use and is strictly a research chemical.
These protocols are for reference only. InvivoChem does not independently validate these methods.
Physicochemical Properties
Molecular Formula
C8H6BRN
Molecular Weight
196.04
Exact Mass
194.968
CAS #
10075-50-0
PubChem CID
24905
Appearance
White to light brown solid powder
Density
1.7±0.1 g/cm3
Boiling Point
316.9±15.0 °C at 760 mmHg
Melting Point
90-92 °C(lit.)
Flash Point
145.5±20.4 °C
Vapour Pressure
0.0±0.7 mmHg at 25°C
Index of Refraction
1.712
LogP
3
Hydrogen Bond Donor Count
1
Hydrogen Bond Acceptor Count
0
Rotatable Bond Count
0
Heavy Atom Count
10
Complexity
126
Defined Atom Stereocenter Count
0
SMILES
C1=CC2=C(C=CN2)C=C1Br
InChi Key
VXWVFZFZYXOBTA-UHFFFAOYSA-N
InChi Code
InChI=1S/C8H6BrN/c9-7-1-2-8-6(5-7)3-4-10-8/h1-5,10H
Chemical Name
5-bromo-1H-indole
HS Tariff Code
2934.99.9001
Storage

Powder      -20°C    3 years

                     4°C     2 years

In solvent   -80°C    6 months

                  -20°C    1 month

Note: This product requires protection from light (avoid light exposure) during transportation and storage.
Shipping Condition
Room temperature (This product is stable at ambient temperature for a few days during ordinary shipping and time spent in Customs)
Solubility Data
Solubility (In Vitro)
DMSO: 100 mg/mL (510.10 mM)
Solubility (In Vivo)
Solubility in Formulation 1: ≥ 2.5 mg/mL (12.75 mM) (saturation unknown) in 10% DMSO + 40% PEG300 + 5% Tween80 + 45% Saline (add these co-solvents sequentially from left to right, and one by one), clear solution.
For example, if 1 mL of working solution is to be prepared, you can add 100 μL of 25.0 mg/mL clear DMSO stock solution to 400 μL PEG300 and mix evenly; then add 50 μL Tween-80 to the above solution and mix evenly; then add 450 μL normal saline to adjust the volume to 1 mL.
Preparation of saline: Dissolve 0.9 g of sodium chloride in 100 mL ddH₂ O to obtain a clear solution.

Solubility in Formulation 2: ≥ 2.5 mg/mL (12.75 mM) (saturation unknown) in 10% DMSO + 90% (20% SBE-β-CD in Saline) (add these co-solvents sequentially from left to right, and one by one), clear solution.
For example, if 1 mL of working solution is to be prepared, you can add 100 μL of 25.0 mg/mL clear DMSO stock solution to 900 μL of 20% SBE-β-CD physiological saline solution and mix evenly.
Preparation of 20% SBE-β-CD in Saline (4°C,1 week): Dissolve 2 g SBE-β-CD in 10 mL saline to obtain a clear solution.

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Solubility in Formulation 3: ≥ 2.5 mg/mL (12.75 mM) (saturation unknown) in 10% DMSO + 90% Corn Oil (add these co-solvents sequentially from left to right, and one by one), clear solution.
For example, if 1 mL of working solution is to be prepared, you can add 100 μL of 25.0 mg/mL clear DMSO stock solution to 900 μL of corn oil and mix evenly.


 (Please use freshly prepared in vivo formulations for optimal results.)
Preparing Stock Solutions 1 mg 5 mg 10 mg
1 mM 5.1010 mL 25.5050 mL 51.0100 mL
5 mM 1.0202 mL 5.1010 mL 10.2020 mL
10 mM 0.5101 mL 2.5505 mL 5.1010 mL

*Note: Please select an appropriate solvent for the preparation of stock solution based on your experiment needs. For most products, DMSO can be used for preparing stock solutions (e.g. 5 mM, 10 mM, or 20 mM concentration); some products with high aqueous solubility may be dissolved in water directly. Solubility information is available at the above Solubility Data section. Once the stock solution is prepared, aliquot it to routine usage volumes and store at -20°C or -80°C. Avoid repeated freeze and thaw cycles.

Calculator

Molarity Calculator allows you to calculate the mass, volume, and/or concentration required for a solution, as detailed below:

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An example of molarity calculation using the molarity calculator is shown below:
What is the mass of compound required to make a 10 mM stock solution in 5 ml of DMSO given that the molecular weight of the compound is 350.26 g/mol?
  • Enter 350.26 in the Molecular Weight (MW) box
  • Enter 10 in the Concentration box and choose the correct unit (mM)
  • Enter 5 in the Volume box and choose the correct unit (mL)
  • Click the “Calculate” button
  • The answer of 17.513 mg appears in the Mass box. In a similar way, you may calculate the volume and concentration.

Dilution Calculator allows you to calculate how to dilute a stock solution of known concentrations. For example, you may Enter C1, C2 & V2 to calculate V1, as detailed below:

What volume of a given 10 mM stock solution is required to make 25 ml of a 25 μM solution?
Using the equation C1V1 = C2V2, where C1=10 mM, C2=25 μM, V2=25 ml and V1 is the unknown:
  • Enter 10 into the Concentration (Start) box and choose the correct unit (mM)
  • Enter 25 into the Concentration (End) box and select the correct unit (mM)
  • Enter 25 into the Volume (End) box and choose the correct unit (mL)
  • Click the “Calculate” button
  • The answer of 62.5 μL (0.1 ml) appears in the Volume (Start) box
g/mol

Molecular Weight Calculator allows you to calculate the molar mass and elemental composition of a compound, as detailed below:

Note: Chemical formula is case sensitive: C12H18N3O4  c12h18n3o4
Instructions to calculate molar mass (molecular weight) of a chemical compound:
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Definitions of molecular mass, molecular weight, molar mass and molar weight:
  • Molecular mass (or molecular weight) is the mass of one molecule of a substance and is expressed in the unified atomic mass units (u). (1 u is equal to 1/12 the mass of one atom of carbon-12)
  • Molar mass (molar weight) is the mass of one mole of a substance and is expressed in g/mol.
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  • The answer appears in the Volume (to add to vial) box
In vivo Formulation Calculator (Clear solution)
Step 1: Enter information below (Recommended: An additional animal to make allowance for loss during the experiment)
Step 2: Enter in vivo formulation (This is only a calculator, not the exact formulation for a specific product. Please contact us first if there is no in vivo formulation in the solubility section.)
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Calculation results

Working concentration mg/mL;

Method for preparing DMSO stock solution mg drug pre-dissolved in μL DMSO (stock solution concentration mg/mL). Please contact us first if the concentration exceeds the DMSO solubility of the batch of drug.

Method for preparing in vivo formulation:Take μL DMSO stock solution, next add μL PEG300, mix and clarify, next addμL Tween 80, mix and clarify, next add μL ddH2O,mix and clarify.

(1) Please be sure that the solution is clear before the addition of next solvent. Dissolution methods like vortex, ultrasound or warming and heat may be used to aid dissolving.
             (2) Be sure to add the solvent(s) in order.

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