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BY13

BY13 is an SRC-3 PROTAC degrader with a half-maximal lethal concentration (DC50) of 0.031 μM.
BY13
BY13 Chemical Structure Product category: ERR
This product is for research use only, not for human use. We do not sell to patients.
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Product Description
BY13 is an SRC-3 protachalcogenide degrader with a median lethal concentration (DC50) of 0.031 μM. BY13 selectively blocks the estrogen receptor (ER) signaling pathway, rather than the androgen receptor (AR) signaling pathway, by downregulating ERα levels. BY13 effectively overcomes endocrine resistance in breast cancer, acting by inducing cell cycle arrest at G1 phase and apoptosis, and is superior to fulvestrant. In the LCC2 xenograft mouse model, BY13 significantly inhibited the growth of drug-resistant breast tumors without significant toxicity. In the figure, the pink portion represents the SRC-3 ligand (SI-2); the blue portion represents the CRBN ligase ligand; and the black portion represents the linker.
Biological Activity I Assay Protocols (From Reference)
ln Vitro
BY13 (0.1-10 μM, 24 hours) reduced the levels of SRC-3 and ERα proteins in MCF-7 cells in a dose-dependent manner, degrading them by 71% and 85%, respectively [1]. BY13 (0.01-10 μM, 36 hours) effectively inhibited the proliferation of wild-type, mutant and drug-resistant breast cancer cells (IC50 of 0.003-0.35 μM for MCF-7, LCC2 and MCF-7D538G/Y537S/EGFR cells), and degraded SRC-3 and ERα in mutant cells in a dose-dependent manner (especially at a concentration of 0.1 μM, the degradation effect on MCF-7Y537S cells was more significant) [1]. BY13 (0.1-10 μM, 3-48 hours) effectively reduced the protein levels of SRC-3 and ERα, with better effects than fulvestrant, and reached maximum degradation after 36 hours, after which it hardly increased over time in LCC2 cells [1]. BY13 (0.01-20 μM, 36 hours) significantly reduced the protein levels of SRC-3 (0.1 μM only) and ERα (1 μM only) in MCF-7 cells (the half-lethal concentration of SRC-3 was 0.031 μM), and was subtype selective, with stronger inhibitory effects on SRC-1 than on SRC-2 [1]. BY13 (0.01-5 μM, 24 hours) downregulated the protein level of AR in MCF-7 cells, but its effect was weaker than that on ERα, and it had a moderate inhibitory effect on AR-overexpressing LNCaP cells (IC50: 1.43 μM) [1]. BY13 (1 μM, 36 h) significantly reduced the level of SRC-3 protein in MCF-7 cells via the ubiquitin-proteasome system (UPS) pathway (a similar phenomenon was observed in LCC2 cells) [1]. BY13 (1 μM, 6 h, 40-76°C) can enter tumor cells and bind directly to SRC-3, significantly enhancing the thermal stability of SRC-3 protein in MCF-7 cells at high temperatures [1]. BY13 (10 μM, 6 h) induces spatial proximity between SRC-3 and CRBN, thereby promoting the formation of the SRC-3-BY13-CRBN ternary complex in MCF-7 cells [1]. BY13 (0.01-10 μM, 36 h) significantly increased the mRNA expression level of SRC-3 in LCC2 cells with increasing concentration and effectively reduced the mRNA level of ERα [1]. BY13 (1-20 μM, 48 h) significantly induced apoptosis in breast cancer cells and enhanced early and late apoptosis in MCF-7 and LCC2 cells. BY13 (5-20 μM, 48 hours) dose-dependently arrested LCC2 cells in the G1 phase, with a significantly higher proportion of cells in the G1 phase than in the S phase. BY13 (0.01-100 μM) exhibited good metabolic stability and acceptable safety, with IC50 values of 2.73 μM for CYP3A4 and 1.1 μM for hERG channels.
ln Vivo
BY13 (3-10 μM/kg, intraperitoneal injection, once every two days for 23 days) has strong anti-endocrine resistance activity by targeting SRC-3 and ERα degradation, has high safety, and can improve the poor prognosis of endocrine resistant breast cancer in LCC2 xenograft mouse model [1].
Cell Assay
Western Blot Analysis [1]
Cell Types: MCF-7 cells, LCC2 cells
Tested Concentrations: 0.01, 0.1, 1, 5, 10 μM
Incubation Duration: 24 hours
Experimental Results: At a concentration of 1 μM, both SRC-3 and ERα proteins in MCF-7 cells were degraded, with degradation rates of 71% and 85%, respectively. In MCF-7 cells, the levels of SRC-3 and ERα proteins decreased in a dose-dependent manner, and no typical "hook effect" was observed. In LCC2 cells, the degradation rates of SRC-3 and ERα proteins were significantly higher than those of fulvestrant. In MCF-7 cells, the level of AR protein was also downregulated, but its downregulation effect was weaker than that of ERα.
Western Blot Analysis [1]
Cell Types: MCF-7 cells, LCC2 cells
Tested Concentrations: 1 μM
Incubation Duration: MCF-7 cells (3, 6, 9, 12, 24, 36 hours), LCC2 cells (3, 6, 9, 12, 24, 36, 48 hours)
Experimental Results: After 24 hours, the SRC-3 protein level in MCF-7 cells decreased significantly, reaching maximum degradation after 36 hours. The SRC-3 protein level in LCC2 cells decreased significantly after 9 hours of treatment, reaching maximum degradation after 36 hours, and degradation hardly increased further.
Western Blot Analysis [1]
Cell Types: MCF-7 cells, LCC2 cells
Tested Concentrations: 1 μM, after 2 hours of treatment with 1 μM MG-132, bortezomib, chloroquine, or (BY13-Neg, SI-2, and pomalidomide)
Incubation Duration: 36 hours
Experimental Results: SRC-3 protein levels were significantly reduced, dependent on the ubiquitin-proteasome system (UPS) pathway, but this effect could be reversed by two proteasome inhibitors (MG-132, bortezomib, and SI-2), while BY13-Neg could not (similar symptoms were observed in LCC2 cells).
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Apoptosis Analysis [1]
Cell Types: MCF-7 cells, LCC2 cells
Tested Concentrations: 1, 5, 10, 20 μM
Incubation Duration: 48 hours
Experimental Results: In MCF-7 cells, increasing concentration effectively induced apoptosis and enhanced early and late apoptosis (early apoptosis rate up to 35%). In LCC2 cells, 1 μM mainly induced late apoptosis, 10 μM induced early apoptosis, and 20 μM induced strong early apoptosis (early apoptosis rate > 30%).

Animal Protocol
Animal/Disease Models:LCC2 cells (5 × 10⁶ cells/mouse) were subcutaneously injected into the right axilla of 4-week-old female Balb/c nude mice to establish an LCC2 xenograft mouse model [1].
Doses: 3, 5, 10 μM/kg, tamoxifen (10 μM/kg) and fulvestrant (5 μM/kg)
Route of Administration: Intraperitoneal injection, once every two days for 23 days until the tumor volume reached about 100 mm³, and then samples were collected on day 36.
Experimental Results: The 3 μM/kg dose group significantly inhibited tumor growth, and the 5 μM/kg dose group had a better effect, with a tumor growth inhibition rate of 54%. At the 3 μM/kg dose, SRC-3 protein in the tumor tissue was almost completely degraded; at the 5 μM/kg dose, the protein levels of SRC-3 and ERα were further reduced. This drug exhibits a wide therapeutic window, and no significant increase in body weight was observed in mouse models at doses up to 10 μM/kg. No significant histopathological changes were observed in mouse model organs and tissues during administration at 3 μM/kg and 5 μM/kg, demonstrating good safety. At doses of 3 μM/kg and 5 μM/kg, the drug reduced Ki-67 expression levels in tumor tissues, thereby improving the poor prognosis of endocrine-resistant breast cancer.
References

[1]. Intercepting the Downstream of the Estrogen Receptor Signaling Pathway: Discovery of a Potent and Efficient SRC-3 PROTAC Degrader for Overcoming Endocrine Resistance Breast Cancer. J Med Chem. 2025 Jun 12; 68(11):11516-11542.

These protocols are for reference only. InvivoChem does not independently validate these methods.
Physicochemical Properties
Appearance
Typically exists as solids at room temperature
HS Tariff Code
2934.99.9001
Storage

Powder      -20°C    3 years

                     4°C     2 years

In solvent   -80°C    6 months

                  -20°C    1 month

Shipping Condition
Room temperature (This product is stable at ambient temperature for a few days during ordinary shipping and time spent in Customs)
Solubility Data
Solubility (In Vitro)
May dissolve in DMSO (in most cases), if not, try other solvents such as H2O, Ethanol, or DMF with a minute amount of products to avoid loss of samples
Solubility (In Vivo)
Note: Listed below are some common formulations that may be used to formulate products with low water solubility (e.g. < 1 mg/mL), you may test these formulations using a minute amount of products to avoid loss of samples.

Injection Formulations
(e.g. IP/IV/IM/SC)
Injection Formulation 1: DMSO : Tween 80: Saline = 10 : 5 : 85 (i.e. 100 μL DMSO stock solution 50 μL Tween 80 850 μL Saline)
*Preparation of saline: Dissolve 0.9 g of sodium chloride in 100 mL ddH ₂ O to obtain a clear solution.
Injection Formulation 2: DMSO : PEG300Tween 80 : Saline = 10 : 40 : 5 : 45 (i.e. 100 μL DMSO 400 μLPEG300 50 μL Tween 80 450 μL Saline)
Injection Formulation 3: DMSO : Corn oil = 10 : 90 (i.e. 100 μL DMSO 900 μL Corn oil)
Example: Take the Injection Formulation 3 (DMSO : Corn oil = 10 : 90) as an example, if 1 mL of 2.5 mg/mL working solution is to be prepared, you can take 100 μL 25 mg/mL DMSO stock solution and add to 900 μL corn oil, mix well to obtain a clear or suspension solution (2.5 mg/mL, ready for use in animals).
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Injection Formulation 4: DMSO : 20% SBE-β-CD in saline = 10 : 90 [i.e. 100 μL DMSO 900 μL (20% SBE-β-CD in saline)]
*Preparation of 20% SBE-β-CD in Saline (4°C,1 week): Dissolve 2 g SBE-β-CD in 10 mL saline to obtain a clear solution.
Injection Formulation 5: 2-Hydroxypropyl-β-cyclodextrin : Saline = 50 : 50 (i.e. 500 μL 2-Hydroxypropyl-β-cyclodextrin 500 μL Saline)
Injection Formulation 6: DMSO : PEG300 : castor oil : Saline = 5 : 10 : 20 : 65 (i.e. 50 μL DMSO 100 μLPEG300 200 μL castor oil 650 μL Saline)
Injection Formulation 7: Ethanol : Cremophor : Saline = 10: 10 : 80 (i.e. 100 μL Ethanol 100 μL Cremophor 800 μL Saline)
Injection Formulation 8: Dissolve in Cremophor/Ethanol (50 : 50), then diluted by Saline
Injection Formulation 9: EtOH : Corn oil = 10 : 90 (i.e. 100 μL EtOH 900 μL Corn oil)
Injection Formulation 10: EtOH : PEG300Tween 80 : Saline = 10 : 40 : 5 : 45 (i.e. 100 μL EtOH 400 μLPEG300 50 μL Tween 80 450 μL Saline)


Oral Formulations
Oral Formulation 1: Suspend in 0.5% CMC Na (carboxymethylcellulose sodium)
Oral Formulation 2: Suspend in 0.5% Carboxymethyl cellulose
Example: Take the Oral Formulation 1 (Suspend in 0.5% CMC Na) as an example, if 100 mL of 2.5 mg/mL working solution is to be prepared, you can first prepare 0.5% CMC Na solution by measuring 0.5 g CMC Na and dissolve it in 100 mL ddH2O to obtain a clear solution; then add 250 mg of the product to 100 mL 0.5% CMC Na solution, to make the suspension solution (2.5 mg/mL, ready for use in animals).
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Oral Formulation 3: Dissolved in PEG400
Oral Formulation 4: Suspend in 0.2% Carboxymethyl cellulose
Oral Formulation 5: Dissolve in 0.25% Tween 80 and 0.5% Carboxymethyl cellulose
Oral Formulation 6: Mixing with food powders


Note: Please be aware that the above formulations are for reference only. InvivoChem strongly recommends customers to read literature methods/protocols carefully before determining which formulation you should use for in vivo studies, as different compounds have different solubility properties and have to be formulated differently.

 (Please use freshly prepared in vivo formulations for optimal results.)
Calculator

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An example of molarity calculation using the molarity calculator is shown below:
What is the mass of compound required to make a 10 mM stock solution in 5 ml of DMSO given that the molecular weight of the compound is 350.26 g/mol?
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  • The answer of 17.513 mg appears in the Mass box. In a similar way, you may calculate the volume and concentration.

Dilution Calculator allows you to calculate how to dilute a stock solution of known concentrations. For example, you may Enter C1, C2 & V2 to calculate V1, as detailed below:

What volume of a given 10 mM stock solution is required to make 25 ml of a 25 μM solution?
Using the equation C1V1 = C2V2, where C1=10 mM, C2=25 μM, V2=25 ml and V1 is the unknown:
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  • The answer of 62.5 μL (0.1 ml) appears in the Volume (Start) box
g/mol

Molecular Weight Calculator allows you to calculate the molar mass and elemental composition of a compound, as detailed below:

Note: Chemical formula is case sensitive: C12H18N3O4  c12h18n3o4
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Definitions of molecular mass, molecular weight, molar mass and molar weight:
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In vivo Formulation Calculator (Clear solution)
Step 1: Enter information below (Recommended: An additional animal to make allowance for loss during the experiment)
Step 2: Enter in vivo formulation (This is only a calculator, not the exact formulation for a specific product. Please contact us first if there is no in vivo formulation in the solubility section.)
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Calculation results

Working concentration mg/mL;

Method for preparing DMSO stock solution mg drug pre-dissolved in μL DMSO (stock solution concentration mg/mL). Please contact us first if the concentration exceeds the DMSO solubility of the batch of drug.

Method for preparing in vivo formulation:Take μL DMSO stock solution, next add μL PEG300, mix and clarify, next addμL Tween 80, mix and clarify, next add μL ddH2O,mix and clarify.

(1) Please be sure that the solution is clear before the addition of next solvent. Dissolution methods like vortex, ultrasound or warming and heat may be used to aid dissolving.
             (2) Be sure to add the solvent(s) in order.

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