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POLA1 inhibitor 1

Cat No.:V46296 Purity: ≥98%
POLA1 inhibitor 1 (Compound 12) is an orally bioactive POLA1 inhibitor.
POLA1 inhibitor 1
POLA1 inhibitor 1 Chemical Structure CAS No.: 2217671-41-3
Product category: New3
This product is for research use only, not for human use. We do not sell to patients.
Size Price Stock Qty
1mg
5mg
10mg
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Product Description
POLA1 inhibitor 1 (Compound 12) is an orally bioactive POLA1 inhibitor. POLA1 inhibitor 1 has anti-tumor effects against several tumor tissue types and Adaroten-resistant cell lines.
POLA1 inhibitor 1 (Compound 12) is an orally bioactive small-molecule inhibitor of POLA1 (DNA Polymerase Alpha 1). It is a novel adamantyl retinoid-related molecule that exhibits antitumor effects against several tumor histotypes and Adaroten-resistant cell lines.
Biological Activity I Assay Protocols (From Reference)
Targets
POLA1 inhibitor 1 selectively targets POLA1, the catalytic subunit of DNA polymerase alpha-primase complex. POLA1 is essential for DNA replication initiation and elongation. Inhibiting POLA1 disrupts DNA replication in cancer cells, particularly those with high rates of DNA replication and repair.
ln Vitro
POLA1 inhibitor 1 inhibits POLA1 enzymatic activity, leading to disruption of DNA replication and induction of replication stress. It exhibits antitumor activity against several tumor tissue types, including HT-29 and MM487 xenograft models. The compound also shows efficacy against Adarotene-resistant cell lines.
ln Vivo
In HT-29 and MM487 xenografts, POLA1 inhibitor 1 (compound 12) (15 mg/kg and 50 mg/kg) had notable anticancer activity [1].
In HT-29 and MM487 xenograft models, POLA1 inhibitor 1 (15 mg/kg and 50 mg/kg) shows notable anticancer activity. As an orally bioactive compound, it is suitable for oral administration in animal studies, supporting its potential as an oral antitumor agent in preclinical research.
Enzyme Assay
The inhibitory activity against POLA1 is measured using an in vitro polymerase assay. Recombinant POLA1 enzyme is incubated with a DNA template/primer and radiolabeled dNTPs. The incorporation of radioactive nucleotides into newly synthesized DNA is quantified, and the IC50 is calculated from the inhibition curve.
Cell Assay
Cancer cell lines (e.g., HT-29 colon cancer, MM487 melanoma, and Adarotene-resistant lines) are cultured and treated with POLA1 inhibitor 1. Cell viability is assessed after 48-72 hours using MTT or CellTiter-Glo assays. The effect on DNA replication can be assessed by measuring BrdU incorporation.
Animal Protocol
Subcutaneous xenograft tumor models are established in immunodeficient mice. POLA1 inhibitor 1 is administered orally at doses of 15 mg/kg and 50 mg/kg. Tumor volumes are measured regularly. Tumors are harvested for histopathological analysis and assessment of proliferation markers (e.g., Ki-67).
ADME/Pharmacokinetics
Detailed PK parameters for POLA1 inhibitor 1 are not extensively documented. As an orally bioactive compound, it is absorbed after oral administration. Solubility data show it is soluble in DMSO at 180 mg/mL, and in vivo formulations using DMSO/PEG300/Tween80/saline are feasible.
Toxicity/Toxicokinetics
Detailed toxicological data for POLA1 inhibitor 1 are not extensively documented. As a research compound targeting DNA replication, potential toxicities may include effects on rapidly dividing normal tissues (bone marrow, gastrointestinal tract). Comprehensive toxicity studies are not publicly reported.
References
[1]. Cincinelli R, et al. Novel adamantyl retinoid-related molecules with POLA1 inhibitory activity. Bioorg Chem. 2020 Nov;104:104253.
Additional Infomation
POLA1 inhibitor 1 is a novel adamantyl retinoid-related molecule with POLA1 inhibitory activity. It is a research tool for studying DNA replication in cancer and for developing therapies targeting POLA1. The compound is not an approved clinical drug.
These protocols are for reference only. InvivoChem does not independently validate these methods.
Physicochemical Properties
Molecular Formula
C26H27NO4
Molecular Weight
417.50
Exact Mass
417.194
CAS #
2217671-41-3
PubChem CID
164517069
Appearance
White to off-white solid powder
LogP
6.3
Hydrogen Bond Donor Count
3
Hydrogen Bond Acceptor Count
5
Rotatable Bond Count
5
Heavy Atom Count
31
Complexity
690
Defined Atom Stereocenter Count
0
SMILES
C1C2CC3CC1CC(C2)(C3)C4=C(C=CC(=C4)C5=C(C=C(C=C5)/C=C/C(=O)O)/C=N/O)O
InChi Key
PLQNJDDLZLIMNK-DTHWQZMASA-N
InChi Code
InChI=1S/C26H27NO4/c28-24-5-3-20(22-4-1-16(2-6-25(29)30)10-21(22)15-27-31)11-23(24)26-12-17-7-18(13-26)9-19(8-17)14-26/h1-6,10-11,15,17-19,28,31H,7-9,12-14H2,(H,29,30)/b6-2+,27-15+
Chemical Name
(E)-3-[4-[3-(1-adamantyl)-4-hydroxyphenyl]-3-[(E)-hydroxyiminomethyl]phenyl]prop-2-enoic acid
HS Tariff Code
2934.99.9001
Storage

Powder      -20°C    3 years

                     4°C     2 years

In solvent   -80°C    6 months

                  -20°C    1 month

Note: Please store this product in a sealed and protected environment (e.g. under nitrogen), avoid exposure to moisture and light.
Shipping Condition
Room temperature (This product is stable at ambient temperature for a few days during ordinary shipping and time spent in Customs)
Solubility Data
Solubility (In Vitro)
DMSO : ~180 mg/mL (~431.14 mM)
Solubility (In Vivo)
Solubility in Formulation 1: ≥ 4.5 mg/mL (10.78 mM) (saturation unknown) in 10% DMSO + 40% PEG300 + 5% Tween80 + 45% Saline (add these co-solvents sequentially from left to right, and one by one), clear solution.
For example, if 1 mL of working solution is to be prepared, you can add 100 μL of 45.0 mg/mL clear DMSO stock solution to 400 μL PEG300 and mix evenly; then add 50 μL Tween-80 to the above solution and mix evenly; then add 450 μL normal saline to adjust the volume to 1 mL.
Preparation of saline: Dissolve 0.9 g of sodium chloride in 100 mL ddH₂ O to obtain a clear solution.

Solubility in Formulation 2: ≥ 4.5 mg/mL (10.78 mM) (saturation unknown) in 10% DMSO + 90% (20% SBE-β-CD in Saline) (add these co-solvents sequentially from left to right, and one by one), clear solution.
For example, if 1 mL of working solution is to be prepared, you can add 100 μL of 45.0 mg/mL clear DMSO stock solution to 900 μL of 20% SBE-β-CD physiological saline solution and mix evenly.
Preparation of 20% SBE-β-CD in Saline (4°C,1 week): Dissolve 2 g SBE-β-CD in 10 mL saline to obtain a clear solution.

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Solubility in Formulation 3: ≥ 4.5 mg/mL (10.78 mM) (saturation unknown) in 10% DMSO + 90% Corn Oil (add these co-solvents sequentially from left to right, and one by one), clear solution.
For example, if 1 mL of working solution is to be prepared, you can add 100 μL of 45.0 mg/mL clear DMSO stock solution to 900 μL of corn oil and mix evenly.


 (Please use freshly prepared in vivo formulations for optimal results.)
Preparing Stock Solutions 1 mg 5 mg 10 mg
1 mM 2.3952 mL 11.9760 mL 23.9521 mL
5 mM 0.4790 mL 2.3952 mL 4.7904 mL
10 mM 0.2395 mL 1.1976 mL 2.3952 mL

*Note: Please select an appropriate solvent for the preparation of stock solution based on your experiment needs. For most products, DMSO can be used for preparing stock solutions (e.g. 5 mM, 10 mM, or 20 mM concentration); some products with high aqueous solubility may be dissolved in water directly. Solubility information is available at the above Solubility Data section. Once the stock solution is prepared, aliquot it to routine usage volumes and store at -20°C or -80°C. Avoid repeated freeze and thaw cycles.

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What is the mass of compound required to make a 10 mM stock solution in 5 ml of DMSO given that the molecular weight of the compound is 350.26 g/mol?
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What volume of a given 10 mM stock solution is required to make 25 ml of a 25 μM solution?
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Note: Chemical formula is case sensitive: C12H18N3O4  c12h18n3o4
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In vivo Formulation Calculator (Clear solution)
Step 1: Enter information below (Recommended: An additional animal to make allowance for loss during the experiment)
Step 2: Enter in vivo formulation (This is only a calculator, not the exact formulation for a specific product. Please contact us first if there is no in vivo formulation in the solubility section.)
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Calculation results

Working concentration mg/mL;

Method for preparing DMSO stock solution mg drug pre-dissolved in μL DMSO (stock solution concentration mg/mL). Please contact us first if the concentration exceeds the DMSO solubility of the batch of drug.

Method for preparing in vivo formulation:Take μL DMSO stock solution, next add μL PEG300, mix and clarify, next addμL Tween 80, mix and clarify, next add μL ddH2O,mix and clarify.

(1) Please be sure that the solution is clear before the addition of next solvent. Dissolution methods like vortex, ultrasound or warming and heat may be used to aid dissolving.
             (2) Be sure to add the solvent(s) in order.

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