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PDGFRα kinase inhibitor 1

Cat No.:V31557 Purity: ≥98%
PDGFRα kinase inhibitor 1 is a selective inhibitor of type II PDGFRα kinase.
PDGFRα kinase inhibitor 1
PDGFRα kinase inhibitor 1 Chemical Structure CAS No.: 2209053-93-8
Product category: New2
This product is for research use only, not for human use. We do not sell to patients.
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Product Description
PDGFRα kinase inhibitor 1 is a selective inhibitor of type II PDGFRα kinase. The IC50 for inhibiting PDGFRα and PDGFRβ is 132 nM and 6115 nM respectively.
PDGFRalpha kinase inhibitor 1 is a highly selective type II inhibitor of platelet-derived growth factor receptor alpha (PDGFRalpha) kinase. With a molecular formula of C34H34N₈O2 and a molecular weight of 586.69, it exhibits IC₅0 values of 132 nM for PDGFRalpha and 6115 nM for PDGFRbeta. This compound is a protein tyrosine kinase/RTK inhibitor used in research on diseases related to PDGFR kinase activity.
Biological Activity I Assay Protocols (From Reference)
Targets
PDGFRalpha kinase inhibitor 1 targets platelet-derived growth factor receptor alpha (PDGFRalpha), a type II receptor tyrosine kinase that plays a critical role in cell proliferation, migration, and survival. The compound acts as a selective inhibitor of PDGFRalpha with an IC₅0 of 132 nM. It shows significantly lower potency against PDGFRbeta (IC₅0 = 6115 nM), demonstrating approximately 46-fold selectivity for PDGFRalpha over PDGFRbeta. This high selectivity makes it a valuable tool for studying PDGFRalpha-specific signaling pathways.
ln Vitro
PDGFRα kinase inhibitor 1 (CHMFL-PDGFR-159, compound 15i) has a mild inhibitory action on DDR1 kinase (IC50: 2462±126 nM) [1].
In vitro, PDGFRalpha kinase inhibitor 1 is a highly selective type II PDGFRalpha kinase inhibitor with IC₅0 values of 132 nM for PDGFRalpha and 6115 nM for PDGFRbeta. Its approximately 46-fold selectivity for PDGFRalpha over PDGFRbeta makes it a valuable tool for dissecting PDGFRalpha-specific signaling pathways. The compound's inhibitory activity is typically assessed in kinase activity assays using recombinant PDGFRalpha and PDGFRbeta enzymes. Its selectivity profile makes it useful for studying the role of PDGFRalpha in various cellular processes and diseases.
ln Vivo
In vivo studies of PDGFRalpha kinase inhibitor 1 are likely focused on evaluating its efficacy in animal models of diseases where PDGFRalpha plays a role, such as fibrosis, cancer, and vascular diseases. As a highly selective PDGFRalpha inhibitor, the compound may offer advantages over less selective PDGFR inhibitors by reducing off-target effects. Further in vivo studies are needed to fully characterize its pharmacokinetic properties, bioavailability, and efficacy in various disease models.
Enzyme Assay
For in vitro enzyme/receptor binding assays, PDGFRalpha kinase inhibitor 1 is evaluated using kinase activity assays that measure PDGFRalpha-mediated phosphorylation. The compound is incubated with recombinant PDGFRalpha kinase and ATP at various concentrations. Kinase activity is quantified by measuring phosphorylation of peptide substrates using radiometric, fluorescence-based, or ELISA methods. IC₅0 values are determined from dose-response curves. Selectivity profiling against PDGFRbeta and other kinases is performed to confirm specificity. Standard assay conditions include physiological buffer systems with appropriate ATP concentrations.
Cell Assay
For in vitro cellular experiments, PDGFRalpha kinase inhibitor 1 is tested in cell lines expressing PDGFRalpha to evaluate its effects on receptor signaling and cellular functions. Cells are cultured in appropriate media and treated with various concentrations of the compound. PDGFRalpha phosphorylation and downstream signaling pathways (such as PI3K/AKT and MAPK/ERK) are assessed by Western blotting. Cell proliferation, migration, and survival are evaluated using standard assays. The compound's effects on PDGFRbeta-mediated signaling can be assessed in parallel to confirm selectivity.
Animal Protocol
For in vivo animal experiments, PDGFRalpha kinase inhibitor 1 can be administered to animals via various routes including oral gavage, intravenous injection, or intraperitoneal injection, depending on its solubility and pharmacokinetic properties. The compound's efficacy can be evaluated in models of fibrosis, cancer, or other diseases where PDGFRalpha plays a role. Typical dosing regimens may range from 1 to 50 mg/kg. Pharmacodynamic markers such as PDGFRalpha phosphorylation are measured in tissues. Disease progression and physiological parameters are assessed.
ADME/Pharmacokinetics
Pharmacokinetic properties of PDGFRalpha kinase inhibitor 1 are not extensively detailed in the public literature. As a small molecule with a molecular weight of 586.69, it may have reasonable oral bioavailability and tissue distribution. The compound's chemical properties suggest it may be suitable for oral administration. Detailed parameters such as Cₘₐₓ, Tₘₐₓ, AUC, half-life, and clearance would need to be determined through comprehensive PK studies. The compound's metabolism and excretion pathways remain to be fully characterized.
Toxicity/Toxicokinetics
Toxicological data for PDGFRalpha kinase inhibitor 1 are limited, as it is primarily a research tool. As a PDGFRalpha inhibitor, its toxicity would depend on the importance of PDGFRalpha signaling for normal cellular function. PDGFRalpha is involved in various physiological processes including development, wound healing, and tissue homeostasis. Comprehensive toxicology studies including acute and repeated-dose toxicity, genotoxicity, and cardiotoxicity assessments would be needed for further development. Appropriate safety precautions should be taken when handling this compound.
References

[1]. Discovery of 4-((N-(2-(dimethylamino)ethyl)acrylamido)methyl)-N-(4-methyl-3-((4-(pyridin-3-yl)pyrimidin-2-yl)amino)phenyl)benzamide (CHMFL-PDGFR-159) as a highly selective type II PDGFRα kinase inhibitor for PDGFRα driving chronic eosinophi.

Additional Infomation
PDGFRalpha kinase inhibitor 1 is a research compound used to study PDGFRalpha signaling and develop therapies for PDGFRalpha-related diseases. No clinical trials or regulatory approvals have been reported for this compound as a therapeutic agent. It is available from various chemical suppliers for research purposes only. The compound is a highly selective type II PDGFRalpha kinase inhibitor with IC₅0 values of 132 nM for PDGFRalpha and 6115 nM for PDGFRbeta.
These protocols are for reference only. InvivoChem does not independently validate these methods.
Physicochemical Properties
Molecular Formula
C34H34N8O2
Molecular Weight
586.686166286469
Exact Mass
586.28
CAS #
2209053-93-8
PubChem CID
129318936
Appearance
Light yellow to yellow solid powder
LogP
3.8
Hydrogen Bond Donor Count
2
Hydrogen Bond Acceptor Count
8
Rotatable Bond Count
11
Heavy Atom Count
44
Complexity
897
Defined Atom Stereocenter Count
0
SMILES
O=C(C1C=NC=CC=1)N(CC1C=CC(C(NC2C=CC(C)=C(C=2)NC2N=CC=C(C3C=NC=CC=3)N=2)=O)=CC=1)CCN(C)C
InChi Key
NWVOHJOHQOHBMB-UHFFFAOYSA-N
InChi Code
InChI=1S/C34H34N8O2/c1-24-8-13-29(20-31(24)40-34-37-17-14-30(39-34)27-6-4-15-35-21-27)38-32(43)26-11-9-25(10-12-26)23-42(19-18-41(2)3)33(44)28-7-5-16-36-22-28/h4-17,20-22H,18-19,23H2,1-3H3,(H,38,43)(H,37,39,40)
Chemical Name
N-[2-(dimethylamino)ethyl]-N-[[4-[[4-methyl-3-[(4-pyridin-3-ylpyrimidin-2-yl)amino]phenyl]carbamoyl]phenyl]methyl]pyridine-3-carboxamide
HS Tariff Code
2934.99.9001
Storage

Powder      -20°C    3 years

                     4°C     2 years

In solvent   -80°C    6 months

                  -20°C    1 month

Shipping Condition
Room temperature (This product is stable at ambient temperature for a few days during ordinary shipping and time spent in Customs)
Solubility Data
Solubility (In Vitro)
DMSO : ~260 mg/mL (~443.16 mM)
Solubility (In Vivo)
Solubility in Formulation 1: ≥ 2.17 mg/mL (3.70 mM) (saturation unknown) in 10% DMSO + 40% PEG300 + 5% Tween80 + 45% Saline (add these co-solvents sequentially from left to right, and one by one), clear solution.
For example, if 1 mL of working solution is to be prepared, you can add 100 μL of 21.7 mg/mL clear DMSO stock solution to 400 μL PEG300 and mix evenly; then add 50 μL Tween-80 to the above solution and mix evenly; then add 450 μL normal saline to adjust the volume to 1 mL.
Preparation of saline: Dissolve 0.9 g of sodium chloride in 100 mL ddH₂ O to obtain a clear solution.

Solubility in Formulation 2: ≥ 2.17 mg/mL (3.70 mM) (saturation unknown) in 10% DMSO + 90% (20% SBE-β-CD in Saline) (add these co-solvents sequentially from left to right, and one by one), clear solution.
For example, if 1 mL of working solution is to be prepared, you can add 100 μL of 21.7 mg/mL clear DMSO stock solution to 900 μL of 20% SBE-β-CD physiological saline solution and mix evenly.
Preparation of 20% SBE-β-CD in Saline (4°C,1 week): Dissolve 2 g SBE-β-CD in 10 mL saline to obtain a clear solution.

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Solubility in Formulation 3: ≥ 2.17 mg/mL (3.70 mM) (saturation unknown) in 10% DMSO + 90% Corn Oil (add these co-solvents sequentially from left to right, and one by one), clear solution.
For example, if 1 mL of working solution is to be prepared, you can add 100 μL of 21.7 mg/mL clear DMSO stock solution to 900 μL of corn oil and mix evenly.


 (Please use freshly prepared in vivo formulations for optimal results.)
Preparing Stock Solutions 1 mg 5 mg 10 mg
1 mM 1.7045 mL 8.5224 mL 17.0448 mL
5 mM 0.3409 mL 1.7045 mL 3.4090 mL
10 mM 0.1704 mL 0.8522 mL 1.7045 mL

*Note: Please select an appropriate solvent for the preparation of stock solution based on your experiment needs. For most products, DMSO can be used for preparing stock solutions (e.g. 5 mM, 10 mM, or 20 mM concentration); some products with high aqueous solubility may be dissolved in water directly. Solubility information is available at the above Solubility Data section. Once the stock solution is prepared, aliquot it to routine usage volumes and store at -20°C or -80°C. Avoid repeated freeze and thaw cycles.

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What is the mass of compound required to make a 10 mM stock solution in 5 ml of DMSO given that the molecular weight of the compound is 350.26 g/mol?
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What volume of a given 10 mM stock solution is required to make 25 ml of a 25 μM solution?
Using the equation C1V1 = C2V2, where C1=10 mM, C2=25 μM, V2=25 ml and V1 is the unknown:
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  • The answer of 62.5 μL (0.1 ml) appears in the Volume (Start) box
g/mol

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Note: Chemical formula is case sensitive: C12H18N3O4  c12h18n3o4
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In vivo Formulation Calculator (Clear solution)
Step 1: Enter information below (Recommended: An additional animal to make allowance for loss during the experiment)
Step 2: Enter in vivo formulation (This is only a calculator, not the exact formulation for a specific product. Please contact us first if there is no in vivo formulation in the solubility section.)
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Calculation results

Working concentration mg/mL;

Method for preparing DMSO stock solution mg drug pre-dissolved in μL DMSO (stock solution concentration mg/mL). Please contact us first if the concentration exceeds the DMSO solubility of the batch of drug.

Method for preparing in vivo formulation:Take μL DMSO stock solution, next add μL PEG300, mix and clarify, next addμL Tween 80, mix and clarify, next add μL ddH2O,mix and clarify.

(1) Please be sure that the solution is clear before the addition of next solvent. Dissolution methods like vortex, ultrasound or warming and heat may be used to aid dissolving.
             (2) Be sure to add the solvent(s) in order.

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