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PDE-9 inhibitor

Cat No.:V33966 Purity: ≥98%
PDE-9 inhibitor can act on neurodegenerative diseases.
PDE-9 inhibitor
PDE-9 inhibitor Chemical Structure CAS No.: 1082743-70-1
Product category: New2
This product is for research use only, not for human use. We do not sell to patients.
Size Price Stock Qty
5mg
10mg
50mg
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Product Description
PDE-9 inhibitor can act on neurodegenerative diseases.
PDE-9 inhibitor (CAS 1082743-70-1) is a small-molecule compound that selectively inhibits phosphodiesterase 9 (PDE9). PDE9 is an enzyme responsible for the hydrolysis of cyclic guanosine monophosphate (cGMP) in the brain and other tissues. By blocking PDE9 activity, this inhibitor increases intracellular cGMP levels, enhancing signaling pathways involved in synaptic plasticity, memory, and cognition.
Biological Activity I Assay Protocols (From Reference)
Targets
PDE-9 inhibitor targets phosphodiesterase 9 (PDE9), an enzyme that specifically hydrolyzes cGMP. Inhibition of PDE9 leads to elevated cGMP levels, causing enhanced NMDA signaling and contributing to an increase in synaptic plasticity and stabilization. This makes PDE9 a promising target for neurodegenerative diseases.
ln Vitro
In vitro, PDE-9 inhibitor promotes neurotransmitter release and neuronal plasticity by increasing cGMP levels. The compound is evaluated in cell-based assays measuring cGMP accumulation and downstream signaling markers. Inhibition of PDE9 activity leads to enhanced synaptic function and neuroprotection in neuronal cell cultures.
ln Vivo
In vivo, PDE-9 inhibitors have been shown to improve symptoms of erectile dysfunction in wild-type animal models and increase dopamine levels. They also activate neutrophils and platelets, which may be due to their ability to inhibit TNF-alpha production. These compounds show potential for treating neurodegenerative diseases such as Alzheimer's disease by improving cognitive function and synaptic plasticity.
Enzyme Assay
In vitro enzyme assays for PDE-9 inhibitor are performed using purified recombinant PDE9 enzyme. The compound is incubated with the enzyme and a cGMP substrate in a reaction buffer. PDE9 activity is measured by detecting the hydrolysis product GMP using a phosphatase-coupled luminescence assay (e.g., IMAP or Transcreener). IC₅0 values are determined from dose-response curves generated with serial dilutions of the compound.
Cell Assay
Cellular assays for PDE-9 inhibitor are conducted using neuronal cell lines or primary neurons. Cells are treated with the compound at concentrations ranging from 0.1 nM to 10 uM for 1-24 hours. Intracellular cGMP levels are measured by ELISA or immunoassay. Phosphorylation of downstream targets (e.g., VASP or CREB) is assessed by Western blot. Neurite outgrowth and synaptic protein expression are evaluated by immunocytochemistry.
Animal Protocol
In vivo studies for PDE-9 inhibitor are conducted in rodent models of neurodegenerative diseases (e.g., Alzheimer's transgenic mice) or cognitive function models. The compound is administered via oral gavage at doses of 1-30 mg/kg once or twice daily. Cognitive performance is assessed using Morris water maze, novel object recognition, or fear conditioning tests. Brain cGMP levels and synaptic markers are measured post-mortem.
ADME/Pharmacokinetics
Pharmacokinetic properties of PDE-9 inhibitor include good oral bioavailability and brain penetration, which are essential for CNS drug development. The compound is designed to achieve sufficient brain exposure to inhibit PDE9 activity. Metabolic stability and half-life are optimized for once- or twice-daily dosing. The compound is typically formulated for oral administration in preclinical studies.
Toxicity/Toxicokinetics
Toxicological data for PDE-9 inhibitor are not extensively characterized in the literature. As a research compound, standard safety assessments include evaluation of cytotoxicity in cell-based assays and acute toxicity in animal models. No significant adverse effects have been reported at pharmacologically active doses.
Additional Infomation
PDE-9 inhibitor is a research-use compound not approved for clinical therapeutic applications. It represents a promising therapeutic strategy for neurodegenerative diseases by enhancing cGMP signaling and synaptic plasticity. The compound is used in neuroscience research to study the role of PDE9 in cognition, memory, and neuroprotection.
These protocols are for reference only. InvivoChem does not independently validate these methods.
Physicochemical Properties
Molecular Formula
C22H27N5O2
Molecular Weight
393.48208
Exact Mass
393.216
CAS #
1082743-70-1
PubChem CID
135886459
Appearance
White to off-white solid powder
Density
1.39
LogP
3.056
Hydrogen Bond Donor Count
1
Hydrogen Bond Acceptor Count
5
Rotatable Bond Count
4
Heavy Atom Count
29
Complexity
629
Defined Atom Stereocenter Count
2
SMILES
C[C@@H]1CN(C[C@H]1C2=NC3=C(C=NN3C4CCOCC4)C(=O)N2)CC5=CC=CC=C5
InChi Key
RVEJWGYZBXCGGM-DNVCBOLYSA-N
InChi Code
InChI=1S/C22H27N5O2/c1-15-12-26(13-16-5-3-2-4-6-16)14-19(15)20-24-21-18(22(28)25-20)11-23-27(21)17-7-9-29-10-8-17/h2-6,11,15,17,19H,7-10,12-14H2,1H3,(H,24,25,28)/t15-,19-/m1/s1
Chemical Name
6-[(3S,4S)-1-benzyl-4-methylpyrrolidin-3-yl]-1-(oxan-4-yl)-5H-pyrazolo[3,4-d]pyrimidin-4-one
HS Tariff Code
2934.99.9001
Storage

Powder      -20°C    3 years

                     4°C     2 years

In solvent   -80°C    6 months

                  -20°C    1 month

Shipping Condition
Room temperature (This product is stable at ambient temperature for a few days during ordinary shipping and time spent in Customs)
Solubility Data
Solubility (In Vitro)
DMSO : ≥ 100 mg/mL (~254.14 mM)
Solubility (In Vivo)
Solubility in Formulation 1: ≥ 3.25 mg/mL (8.26 mM) (saturation unknown) in 10% DMSO + 90% (20% SBE-β-CD in Saline) (add these co-solvents sequentially from left to right, and one by one), clear solution.
For example, if 1 mL of working solution is to be prepared, you can add 100 μL of 32.5 mg/mL clear DMSO stock solution to 900 μL of 20% SBE-β-CD physiological saline solution and mix evenly.
Preparation of 20% SBE-β-CD in Saline (4°C,1 week): Dissolve 2 g SBE-β-CD in 10 mL saline to obtain a clear solution.

Solubility in Formulation 2: ≥ 3.25 mg/mL (8.26 mM) (saturation unknown) in 10% DMSO + 90% Corn Oil (add these co-solvents sequentially from left to right, and one by one), clear solution.
For example, if 1 mL of working solution is to be prepared, you can add 100 μL of 32.5 mg/mL clear DMSO stock solution to 900 μL of corn oil and mix evenly.

 (Please use freshly prepared in vivo formulations for optimal results.)
Preparing Stock Solutions 1 mg 5 mg 10 mg
1 mM 2.5414 mL 12.7071 mL 25.4143 mL
5 mM 0.5083 mL 2.5414 mL 5.0829 mL
10 mM 0.2541 mL 1.2707 mL 2.5414 mL

*Note: Please select an appropriate solvent for the preparation of stock solution based on your experiment needs. For most products, DMSO can be used for preparing stock solutions (e.g. 5 mM, 10 mM, or 20 mM concentration); some products with high aqueous solubility may be dissolved in water directly. Solubility information is available at the above Solubility Data section. Once the stock solution is prepared, aliquot it to routine usage volumes and store at -20°C or -80°C. Avoid repeated freeze and thaw cycles.

Calculator

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An example of molarity calculation using the molarity calculator is shown below:
What is the mass of compound required to make a 10 mM stock solution in 5 ml of DMSO given that the molecular weight of the compound is 350.26 g/mol?
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  • The answer of 17.513 mg appears in the Mass box. In a similar way, you may calculate the volume and concentration.

Dilution Calculator allows you to calculate how to dilute a stock solution of known concentrations. For example, you may Enter C1, C2 & V2 to calculate V1, as detailed below:

What volume of a given 10 mM stock solution is required to make 25 ml of a 25 μM solution?
Using the equation C1V1 = C2V2, where C1=10 mM, C2=25 μM, V2=25 ml and V1 is the unknown:
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  • The answer of 62.5 μL (0.1 ml) appears in the Volume (Start) box
g/mol

Molecular Weight Calculator allows you to calculate the molar mass and elemental composition of a compound, as detailed below:

Note: Chemical formula is case sensitive: C12H18N3O4  c12h18n3o4
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Definitions of molecular mass, molecular weight, molar mass and molar weight:
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In vivo Formulation Calculator (Clear solution)
Step 1: Enter information below (Recommended: An additional animal to make allowance for loss during the experiment)
Step 2: Enter in vivo formulation (This is only a calculator, not the exact formulation for a specific product. Please contact us first if there is no in vivo formulation in the solubility section.)
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Calculation results

Working concentration mg/mL;

Method for preparing DMSO stock solution mg drug pre-dissolved in μL DMSO (stock solution concentration mg/mL). Please contact us first if the concentration exceeds the DMSO solubility of the batch of drug.

Method for preparing in vivo formulation:Take μL DMSO stock solution, next add μL PEG300, mix and clarify, next addμL Tween 80, mix and clarify, next add μL ddH2O,mix and clarify.

(1) Please be sure that the solution is clear before the addition of next solvent. Dissolution methods like vortex, ultrasound or warming and heat may be used to aid dissolving.
             (2) Be sure to add the solvent(s) in order.

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