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PDD00017273

Alias: PDD-00017273 PDD 00017273 PDD00017273 PDD-17273 PDD 17273 PDD 17273
Cat No.:V40907 Purity: ≥98%
PDD00017273 is a novel, potent and selective poly (ADP ribose) glycohydrolase (PARG) inhibitor with an IC50 of 26 nM.
PDD00017273
PDD00017273 Chemical Structure CAS No.: 1945950-21-9
Product category: New1
This product is for research use only, not for human use. We do not sell to patients.
Size Price Stock Qty
5mg
10mg
25mg
50mg
Other Sizes

Other Forms of PDD00017273:

  • PDD00017273 HCl
Official Supplier of:
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Top Publications Citing lnvivochem Products
Product Description
PDD00017273 is a novel, potent and selective poly (ADP ribose) glycohydrolase (PARG) inhibitor with an IC50 of 26 nM. PDD00017273 exhibits >350-fold selectivity for PARG over a panel of ion channels, enzymes and receptors, including PARP1 and ARH3.
PDD00017273 is a novel, potent, and selective inhibitor of poly(ADP-ribose) glycohydrolase (PARG). This compound exhibits an IC50 of 26 nM for PARG and demonstrates >350-fold selectivity for PARG over a panel of ion channels, enzymes, and receptors, including PARP1 and ARH3. PDD00017273 is cell-permeable and is used for specific killing of cells defective in certain homologous recombination proteins such as BRCA1/2. It has the molecular formula C23H26N6O4S2 and molecular weight of 514.62 g/mol.
Biological Activity I Assay Protocols (From Reference)
Targets
PDD00017273 targets PARG (poly(ADP-ribose) glycohydrolase), an enzyme that catalyzes the hydrolysis of O-glycosidic linkages of ADP-ribose polymers, reversing the effects of poly(ADP-ribose) polymerases (PARPs). PARG has been shown to be involved in the repair of single-strand DNA breaks. By inhibiting PARG, PDD00017273 disrupts the DNA damage response pathway, making it particularly useful in cancer research for studying DNA repair mechanisms and developing combination therapies with genotoxic agents.
ln Vitro
PDD 00017273 is a powerful PARG reagent with an IC50 of 26 nM and a KD of 1.45 nM. For five typical cytochrome P450 enzymes, PDD 00017273 (10 μM) does not inhibit. In addition to inhibiting NAD/H through PARG after DNA damage, PDD 00017273 (30 μM) increases the intensity of phosphorylated H2AX (γH2AX). When it comes to MDA-MB-436 cells labeled with 5396 + 1G>A in BRCA1, PDD 00017273 exhibits minimal activity, but it inhibits ZR-75-1 cells labeled with wild-type BRCA1 and BRCA2 [1]. The breakdown of PAR medium in MCF7 cells is inhibited by PDD 00017273 (0.3 μM). Additionally, BARD1, BRCA2, PALB2, FAM175A, and BRCA1 latency are decreased by PDD 00017273 (0.3 μM). Inducing DNA damage that must be repaired by homologous recombination (HR) and stopping replication forks are the effects of PDD 00017273 [2].
In vitro, PDD00017273 potently inhibits PARG enzymatic activity with an IC50 of 26 nM. The compound exhibits >350-fold selectivity for PARG over a panel of ion channels, enzymes, and receptors, including PARP1 and ARH3. It is cell-permeable and has been shown to specifically kill cells defective in certain homologous recombination proteins such as BRCA1/2. PDD00017273 is used in cancer research to study DNA repair mechanisms and as a radiosensitizing agent.
ln Vivo
In vivo, PDD00017273 has demonstrated antitumor activity in preclinical models. The compound is used in cancer research to study DNA repair mechanisms and develop combination therapies with genotoxic agents. Studies have shown that PARG inhibition by PDD00017273 can sensitize tumors to radiation and chemotherapeutic agents, particularly in tumors with DNA repair deficiencies or p53 mutations. Further in vivo studies are ongoing to evaluate its therapeutic potential.
Enzyme Assay
The in vitro enzyme inhibition assay for PDD00017273 measures PARG enzymatic activity using purified PARG enzyme and a suitable substrate (e.g., ADP-ribose polymers or fluorescently labeled substrates). The assay is performed in optimized buffer systems at 37°C, and the reaction is terminated by the addition of stop solution. Product formation is quantified by fluorescence, absorbance, or HPLC. IC50 values are calculated from dose-response curves by fitting data to a four-parameter logistic equation. Selectivity is assessed against a panel of related enzymes including PARP1 and ARH3.
Cell Assay
In vitro cellular studies are conducted using cancer cell lines, particularly those with DNA repair deficiencies or p53 mutations. Cells are treated with PDD00017273 at various concentrations (typically nanomolar to micromolar) for defined time periods. Cell viability is assessed using CellTiter-Glo or MTT assays. DNA damage and repair are evaluated by measuring γH2AX foci formation, comet assays, or analysis of PAR polymer accumulation. Combination studies with radiation or genotoxic agents are performed to evaluate potential synergistic effects.
Animal Protocol
In vivo animal experiments are performed in mouse xenograft models using human cancer cell lines. Tumor-bearing mice are administered PDD00017273 via oral gavage or intraperitoneal injection at various doses. Tumor volume is measured over time, and endpoints include tumor growth inhibition, survival, and biomarkers of PARG inhibition (e.g., PAR polymer levels). Pharmacodynamic studies evaluate target engagement and pathway modulation in tumor tissues.
ADME/Pharmacokinetics
Pharmacokinetic properties of PDD00017273 include cell permeability and solubility in DMSO (10 mg/mL or 100 mg/mL). The compound is insoluble in water and ethanol. It has a molecular weight of 514.62 g/mol and appears as a white to beige powder. Storage at 2-8°C is recommended. The compound should be protected from moisture, and DMSO stock solutions should be used fresh to maintain solubility.
Toxicity/Toxicokinetics
Toxicological data for PDD00017273 are limited to preclinical studies. The compound is for research use only and not intended for human therapeutic applications. Standard safety precautions should be followed when handling the compound. No significant acute toxicity has been reported at effective doses in animal studies. Long-term toxicity and carcinogenicity studies have not been conducted.
References

[1]. First-in-Class Chemical Probes against Poly(ADP-ribose) Glycohydrolase (PARG) Inhibit DNA Repair with Differential Pharmacology to AZD2281. ACS Chem Biol. 2016 Nov 18;11(11):3179-3190. Epub 2016 Oct 12.

[2]. Specific killing of DNA damage-response deficient cells with inhibitors of poly(ADP-ribose) glycohydrolase. DNA Repair (Amst). 2017 Apr;52:81-91.

Additional Infomation
PDD00017273 is also known as PDD 00017273. It is a potent and selective PARG inhibitor with an IC50 of 26 nM and >350-fold selectivity over PARP1 and ARH3. The compound is used in cancer research, particularly for studying DNA repair mechanisms and developing combination therapies with genotoxic agents. It is supplied as a powder with ≥98% purity and is available in various sizes for research purposes.
These protocols are for reference only. InvivoChem does not independently validate these methods.
Physicochemical Properties
Molecular Formula
C23H26N6O4S2
Molecular Weight
514.6203
Exact Mass
514.146
CAS #
1945950-21-9
Related CAS #
1945950-21-9;
PubChem CID
121398766
Appearance
White to light yellow solid powder
Hydrogen Bond Donor Count
1
Hydrogen Bond Acceptor Count
8
Rotatable Bond Count
7
Heavy Atom Count
35
Complexity
954
Defined Atom Stereocenter Count
0
SMILES
S(C1C=CC2=C(C(N(CC3=CN=C(C)S3)C(N2CC2=CC(C)=NN2C)=O)=O)C=1)(NC1(C)CC1)(=O)=O
InChi Key
IFWUBRBMMNTBRZ-UHFFFAOYSA-N
InChi Code
InChI=1S/C23H26N6O4S2/c1-14-9-16(27(4)25-14)12-28-20-6-5-18(35(32,33)26-23(3)7-8-23)10-19(20)21(30)29(22(28)31)13-17-11-24-15(2)34-17/h5-6,9-11,26H,7-8,12-13H2,1-4H3
Chemical Name
1-[(1,3-Dimethyl-1H-pyrazol-5-yl)methyl]-1,2,3,4-tetrahydro-N-(1-methylcyclopropyl)-3-[(2-methyl-5-thiazolyl)methyl]-2,4-dioxo-6-quinazolinesulfonamide
Synonyms
PDD-00017273 PDD 00017273 PDD00017273 PDD-17273 PDD 17273 PDD 17273
HS Tariff Code
2934.99.9001
Storage

Powder      -20°C    3 years

                     4°C     2 years

In solvent   -80°C    6 months

                  -20°C    1 month

Shipping Condition
Room temperature (This product is stable at ambient temperature for a few days during ordinary shipping and time spent in Customs)
Solubility Data
Solubility (In Vitro)
DMSO : ~25 mg/mL (~48.58 mM)
Solubility (In Vivo)
Solubility in Formulation 1: ≥ 2.5 mg/mL (4.86 mM) (saturation unknown) in 10% DMSO + 40% PEG300 + 5% Tween80 + 45% Saline (add these co-solvents sequentially from left to right, and one by one), clear solution.
For example, if 1 mL of working solution is to be prepared, you can add 100 μL of 25.0 mg/mL clear DMSO stock solution to 400 μL PEG300 and mix evenly; then add 50 μL Tween-80 to the above solution and mix evenly; then add 450 μL normal saline to adjust the volume to 1 mL.
Preparation of saline: Dissolve 0.9 g of sodium chloride in 100 mL ddH₂ O to obtain a clear solution.

Solubility in Formulation 2: ≥ 2.5 mg/mL (4.86 mM) (saturation unknown) in 10% DMSO + 90% (20% SBE-β-CD in Saline) (add these co-solvents sequentially from left to right, and one by one), clear solution.
For example, if 1 mL of working solution is to be prepared, you can add 100 μL of 25.0 mg/mL clear DMSO stock solution to 900 μL of 20% SBE-β-CD physiological saline solution and mix evenly.
Preparation of 20% SBE-β-CD in Saline (4°C,1 week): Dissolve 2 g SBE-β-CD in 10 mL saline to obtain a clear solution.

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Solubility in Formulation 3: ≥ 2.5 mg/mL (4.86 mM) (saturation unknown) in 10% DMSO + 90% Corn Oil (add these co-solvents sequentially from left to right, and one by one), clear solution.
For example, if 1 mL of working solution is to be prepared, you can add 100 μL of 25.0 mg/mL clear DMSO stock solution to 900 μL of corn oil and mix evenly.


 (Please use freshly prepared in vivo formulations for optimal results.)
Preparing Stock Solutions 1 mg 5 mg 10 mg
1 mM 1.9432 mL 9.7159 mL 19.4318 mL
5 mM 0.3886 mL 1.9432 mL 3.8864 mL
10 mM 0.1943 mL 0.9716 mL 1.9432 mL

*Note: Please select an appropriate solvent for the preparation of stock solution based on your experiment needs. For most products, DMSO can be used for preparing stock solutions (e.g. 5 mM, 10 mM, or 20 mM concentration); some products with high aqueous solubility may be dissolved in water directly. Solubility information is available at the above Solubility Data section. Once the stock solution is prepared, aliquot it to routine usage volumes and store at -20°C or -80°C. Avoid repeated freeze and thaw cycles.

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What is the mass of compound required to make a 10 mM stock solution in 5 ml of DMSO given that the molecular weight of the compound is 350.26 g/mol?
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What volume of a given 10 mM stock solution is required to make 25 ml of a 25 μM solution?
Using the equation C1V1 = C2V2, where C1=10 mM, C2=25 μM, V2=25 ml and V1 is the unknown:
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  • The answer of 62.5 μL (0.1 ml) appears in the Volume (Start) box
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Note: Chemical formula is case sensitive: C12H18N3O4  c12h18n3o4
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In vivo Formulation Calculator (Clear solution)
Step 1: Enter information below (Recommended: An additional animal to make allowance for loss during the experiment)
Step 2: Enter in vivo formulation (This is only a calculator, not the exact formulation for a specific product. Please contact us first if there is no in vivo formulation in the solubility section.)
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Calculation results

Working concentration mg/mL;

Method for preparing DMSO stock solution mg drug pre-dissolved in μL DMSO (stock solution concentration mg/mL). Please contact us first if the concentration exceeds the DMSO solubility of the batch of drug.

Method for preparing in vivo formulation:Take μL DMSO stock solution, next add μL PEG300, mix and clarify, next addμL Tween 80, mix and clarify, next add μL ddH2O,mix and clarify.

(1) Please be sure that the solution is clear before the addition of next solvent. Dissolution methods like vortex, ultrasound or warming and heat may be used to aid dissolving.
             (2) Be sure to add the solvent(s) in order.

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