OF-1 (OF-1)

Alias: OF-1; SGC OF 1; SGC OF1; SGC OF-1; SGCOF1; SGC-OF-1;
Cat No.:V0420 Purity: ≥98%
OF-1 (OF1; SGC-OF-1) is a potent and selective inhibitor of bromodomain and PHD finger containing protein 1 (BRPF1)with important biological activity.
OF-1 (OF-1) Chemical Structure CAS No.: 919973-83-4
Product category: Epigenetic Reader Domain
This product is for research use only, not for human use. We do not sell to patients.
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Purity & Quality Control Documentation

Purity: ≥98%

Product Description

OF-1 (OF1; SGC-OF-1) is a potent and selective inhibitor of bromodomain and PHD finger containing protein 1 (BRPF1) with important biological activity. It inhibits BRPF1B and BRPF2 bromodomain with Kds of 100 nM and 500 nM, respectively. BRPF (BRomodomain and PHD Finger containing) protein family are scaffolding proteins that assembles MYST histone acetyltransferase complexes. MYST complexes play important role in DNA repair, recombination, replication and transcription activation.

Biological Activity I Assay Protocols (From Reference)
ln Vitro
OF-1 (1 μM and 2 μM, 0, 1, 2, and 3 days) induces significant reductions in the number of multinucleated tartrate-resistant acid phosphatase (TRAP) positive cells[1]. OF-1 is the sole inhibitor to totally suppress the fusion into multinucleated “osteoclast-like” cells[1].
ln Vivo

Cell Assay
Cell Viability Assay[1]
Cell Types: Murine BMCs during differentiation with 10 ng/mL RANKL.
Tested Concentrations: 1 μM and 2 μM.
Incubation Duration: 0, 1, 2, and 3 days.
Experimental Results: Particularly strong at day 2 after RANKL-induced differentiation.
Animal Protocol


References
[1]. Julia C Meier, et al. Selective Targeting of Bromodomains of the Bromodomain-PHD Fingers Family Impairs Osteoclast Differentiation. ACS Chem Biol. 2017 Oct 20;12(10):2619-2630.
[2]. James Bennett, et al. Discovery of a Chemical Tool Inhibitor Targeting the Bromodomains of TRIM24 and BRPF. J Med Chem. 2016 Feb 25;59(4):1642-7.
These protocols are for reference only. InvivoChem does not independently validate these methods.
Physicochemical Properties
Molecular Formula
C17H18BRN3O4S
Molecular Weight
440.31
CAS #
919973-83-4
Related CAS #
919973-83-4
SMILES
O=S(C1=CC=C(Br)C=C1C)(NC2=C(OC)C=C(N3C)C(N(C)C3=O)=C2)=O
InChi Key
YUNQZQREIHWDQT-UHFFFAOYSA-N
InChi Code
InChI=1S/C17H18BrN3O4S/c1-10-7-11(18)5-6-16(10)26(23,24)19-12-8-13-14(9-15(12)25-4)21(3)17(22)20(13)2/h5-9,19H,1-4H3
Chemical Name
4-Bromo-N-(6-methoxy-1,3-dimethyl-2-oxo-2,3-dihydro-1H-benzoimidazol-5-yl)-2-methyl-benzenesulfonamide
Synonyms
OF-1; SGC OF 1; SGC OF1; SGC OF-1; SGCOF1; SGC-OF-1;
Storage

Powder      -20°C    3 years

                     4°C     2 years

In solvent   -80°C    6 months

                  -20°C    1 month

Shipping Condition
Room temperature (This product is stable at ambient temperature for a few days during ordinary shipping and time spent in Customs)
Solubility Data
Solubility (In Vitro)
DMSO: 76 mg/mL (172.6 mM)
Water:<1 mg/mL
Ethanol:<1 mg/mL
Solubility (In Vivo)
Solubility in Formulation 1: ≥ 2.5 mg/mL (5.68 mM) (saturation unknown) in 10% DMSO + 40% PEG300 + 5% Tween80 + 45% Saline (add these co-solvents sequentially from left to right, and one by one), clear solution.
For example, if 1 mL of working solution is to be prepared, you can add 100 μL of 25.0 mg/mL clear DMSO stock solution to 400 μL PEG300 and mix evenly; then add 50 μL Tween-80 to the above solution and mix evenly; then add 450 μL normal saline to adjust the volume to 1 mL.
Preparation of saline: Dissolve 0.9 g of sodium chloride in 100 mL ddH₂ O to obtain a clear solution.

Solubility in Formulation 2: ≥ 2.5 mg/mL (5.68 mM) (saturation unknown) in 10% DMSO + 90% Corn Oil (add these co-solvents sequentially from left to right, and one by one), clear solution.
For example, if 1 mL of working solution is to be prepared, you can add 100 μL of 25.0 mg/mL clear DMSO stock solution to 900 μL of corn oil and mix evenly.

 (Please use freshly prepared in vivo formulations for optimal results.)
Preparing Stock Solutions 1 mg 5 mg 10 mg
1 mM 2.2711 mL 11.3556 mL 22.7113 mL
5 mM 0.4542 mL 2.2711 mL 4.5423 mL
10 mM 0.2271 mL 1.1356 mL 2.2711 mL

*Note: Please select an appropriate solvent for the preparation of stock solution based on your experiment needs. For most products, DMSO can be used for preparing stock solutions (e.g. 5 mM, 10 mM, or 20 mM concentration); some products with high aqueous solubility may be dissolved in water directly. Solubility information is available at the above Solubility Data section. Once the stock solution is prepared, aliquot it to routine usage volumes and store at -20°C or -80°C. Avoid repeated freeze and thaw cycles.

Calculator

Molarity Calculator allows you to calculate the mass, volume, and/or concentration required for a solution, as detailed below:

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An example of molarity calculation using the molarity calculator is shown below:
What is the mass of compound required to make a 10 mM stock solution in 5 ml of DMSO given that the molecular weight of the compound is 350.26 g/mol?
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  • The answer of 17.513 mg appears in the Mass box. In a similar way, you may calculate the volume and concentration.

Dilution Calculator allows you to calculate how to dilute a stock solution of known concentrations. For example, you may Enter C1, C2 & V2 to calculate V1, as detailed below:

What volume of a given 10 mM stock solution is required to make 25 ml of a 25 μM solution?
Using the equation C1V1 = C2V2, where C1=10 mM, C2=25 μM, V2=25 ml and V1 is the unknown:
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  • The answer of 62.5 μL (0.1 ml) appears in the Volume (Start) box
g/mol

Molecular Weight Calculator allows you to calculate the molar mass and elemental composition of a compound, as detailed below:

Note: Chemical formula is case sensitive: C12H18N3O4  c12h18n3o4
Instructions to calculate molar mass (molecular weight) of a chemical compound:
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Definitions of molecular mass, molecular weight, molar mass and molar weight:
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In vivo Formulation Calculator (Clear solution)
Step 1: Enter information below (Recommended: An additional animal to make allowance for loss during the experiment)
Step 2: Enter in vivo formulation (This is only a calculator, not the exact formulation for a specific product. Please contact us first if there is no in vivo formulation in the solubility section.)
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Calculation results

Working concentration mg/mL;

Method for preparing DMSO stock solution mg drug pre-dissolved in μL DMSO (stock solution concentration mg/mL). Please contact us first if the concentration exceeds the DMSO solubility of the batch of drug.

Method for preparing in vivo formulation:Take μL DMSO stock solution, next add μL PEG300, mix and clarify, next addμL Tween 80, mix and clarify, next add μL ddH2O,mix and clarify.

(1) Please be sure that the solution is clear before the addition of next solvent. Dissolution methods like vortex, ultrasound or warming and heat may be used to aid dissolving.
             (2) Be sure to add the solvent(s) in order.

Clinical Trial Information
NCT Number Recruitment interventions Conditions Sponsor/Collaborators Start Date Phases
NCT04591171 Completed Has Results Procedure: n-of-1 trial guided
clinical decision making
Hypertension
Chronic Kidney Diseases
The University of Texas Health
Science Center, Houston
January 25, 2021 Not Applicable
NCT02744456 Completed Drug: Amlodipine
Drug: Hydrochlorothiazide
Hypertension
High Blood Pressure
Columbia University August 1, 2014 Early Phase 1
NCT00299169 Terminated Behavioral: N of 1 Trials Diabetes
Cardiovascular Disease
Lawson Health Research Institute September 2006 Phase 4
NCT04757584 Completed Has Results Drug: Beta blockers Heart Failure
Heart Failure, Diastolic
Weill Medical College
of Cornell University
April 1, 2021 Phase 4
Biological Data
  • Substrate recognition and inhibitor binding modes. (A) Details of the interaction of H4K5acK8ac with BRPF1B. The inset on the right shows a surface representation indicating the electrostatic potential ranging from +1.5 V (blue) to −1.5 V (red). (B) Details of the interaction of OF-1 with the BRPF1B bromodomain. OF-1 is shown in ball and stick representation. Hydrogen bonds are shown as dotted lines. (C) 2D projection showing the interactions of OF-1 with the BRPF1B acetyl-lysine binding site. Blue dashed lines represent hydrogen bonds; green solid lines, hydrophobic interactions; and green dashed lines, π–π stacking and edge-to-face aromatic interactions. The panel on the top right shows a 2Fo–Fc electron density map contoured at 1.2 σ around the inhibitor at 1.65 Å. (D) Details of the interaction of the BRPF1B bromodomain with PFI-4.
  • Inhibition of BRPF bromodomains in the nucleus. (A) Dose-dependent inhibition of the BRPF1B and histone H3.3 protein interaction with NI-57 and PFI-4 measured by NanoBRET assay. (B) Representative confocal images of nuclei from U2OS cells transfected with plasmids encoding triple bromodomains of BRPF1B treated either with or without SAHA (*) and the panBRPF Inhibitor NI-57. The bleached area is indicated by a red circle. (C) Half-times of fluorescence recovery (t1/2) after photo bleaching measured for the BRPF1B triple bromodomain construct. (D) Half-times of fluorescence recovery (t1/2) after photo bleaching measured for full-length BRPF2 (WT) after treatment with NI-57 at different concentrations with or without SAHA. Bars in panel C and D represent the mean t1/2 calculated from at least 10 individual recovery curves, and error bars depict the standard error of the mean. *p < 0.05, **p < 0.01, ***p < 0.001, ****p < 0.0001 significant difference from wild type with or without SAHA (‡2.5 μM; n-way ANOVA and Dunnett’s posthoc-test).
  • BRPF bromodomain family and its inhibitors. (A) Domain organization of human BRPF proteins. Two splice isoforms of BRPF1B are expressed (A and B) that differ in the ZA loop of the bromodomain. In BRPF1A (or isoform 2), six residues EVTELD (661–666) are inserted into the ZA loop. Annotated domains are the PHD (plant homeo-domain) connected by a zinc finger, the bromodomain (BRD), and the PWWP domain (harboring the PWWP motif). (B) Sequence alignment of human BRPF bromodomains. The main secondary structural elements are highlighted. (C) BLI (BioLayer Interferometry) data measured on the two splice isoforms of BRPF1A and BRPF1B. Shown are the raw data traces for acetylated as well as nonacetylated peptide. (D) Location of the isoform BRPF1A specific insertion depicted on the structure of BRPF1B.
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