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NMIA

Alias: N-Methylisatoic Anhydride; NMIA
Cat No.:V14134 Purity: ≥98%
N-Methylisatoic anhydride (NMIA) is a 2'-OH selective acylating agent of RNA and is extensively used to resolve secondary RNA structures using SHAPE (Selective 2'-OH Acylation by Primer Extension Analysis) technology.
NMIA
NMIA Chemical Structure CAS No.: 10328-92-4
Product category: New1
This product is for research use only, not for human use. We do not sell to patients.
Size Price Stock Qty
500mg
Other Sizes
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Product Description
N-Methylisatoic anhydride (NMIA) is a 2'-OH selective acylating agent of RNA and is extensively used to resolve secondary RNA structures using SHAPE (Selective 2'-OH Acylation by Primer Extension Analysis) technology.
NMIA (CAS#: 10328-92-4), also known as N-Methylisatoic anhydride, is a chemical reagent used as a 2'-OH selective acylation agent of RNAs. It is widely used for resolving secondary RNA structures using the SHAPE (Selective 2'-Hydroxyl Acylation Analyzed by Primer Extension) technology. NMIA has a molecular weight of 177.16 g/mol and a molecular formula of C9H7NO3.
Biological Activity I Assay Protocols (From Reference)
Targets
NMIA does not have a biological target in the context of pharmacology. It is a chemical reagent used for RNA structure analysis in biochemical research. NMIA selectively acylates the 2'-hydroxyl group of ribose in RNA, which is more reactive when the RNA is in a flexible, single-stranded conformation. The acylation reaction modifies the RNA, and the sites of modification are detected by primer extension analysis, providing information about RNA secondary structure.
ln Vitro
In vitro, NMIA is used to modify RNA molecules by selectively acylating the 2'-hydroxyl group of ribose. The acylation reaction is dependent on the conformation of the RNA, with flexible regions being more reactive. The modified RNA is then analyzed by primer extension to identify the sites of modification, which correlate with single-stranded regions of the RNA. NMIA is widely used in SHAPE analysis to determine RNA secondary structure.
ln Vivo
NMIA is not a pharmacologically active compound and is not evaluated for in vivo activity. Its applications are limited to in vitro RNA structure analysis in biochemical research. No in vivo efficacy studies are conducted for NMIA because it is not intended to treat any disease.
Enzyme Assay
In vitro enzyme/receptor binding assays are not applicable to NMIA because it is a chemical reagent rather than a drug candidate. However, the compound may be characterized by physicochemical methods such as HPLC for purity analysis, melting point determination, and solubility testing. Its reactivity with RNA 2'-hydroxyl groups can be assessed using model RNA substrates to confirm its functionality as a SHAPE reagent.
Cell Assay
In vitro cellular assays are not typically performed for NMIA because it is a reagent rather than a drug candidate. When used in cell culture, NMIA may be applied to cells to modify cellular RNA for structure analysis. However, these applications are for research purposes rather than therapeutic evaluation.
Animal Protocol
NMIA is not a pharmacologically active compound and is not evaluated for in vivo therapeutic efficacy. No in vivo animal experiments are conducted for NMIA because it is not intended for therapeutic use. The compound is used exclusively in biochemical research for RNA structure analysis.
ADME/Pharmacokinetics
NMIA has a molecular weight of 177.16 g/mol and a molecular formula of C9H7NO3. It is a white to yellow solid powder with a melting point of 175.0-180.0°C. The compound is soluble in DMSO at 10 mM and should be stored at room temperature under an inert gas to avoid moisture. It has a relative density of 1.3312 g/cm3.
Toxicity/Toxicokinetics
The toxicological profile of NMIA has not been extensively characterized because it is a research reagent rather than a drug candidate. Standard safety precautions should be followed when handling the compound, including the use of appropriate personal protective equipment. No significant toxicity has been reported. Comprehensive toxicology studies are not necessary for this reagent, as it is not intended for human use.
Additional Infomation
N-Methylisoindocyanine anhydride is a 3,1-benzoxazine-1,4-dione with an N-methyl substituent.
NMIA is a chemical reagent used for RNA structure analysis in biochemical research. It is also known as N-Methylisatoic anhydride. NMIA is a 2'-OH selective acylation agent of RNAs and is widely used for resolving secondary RNA structures using the SHAPE technology. NMIA is a research reagent and is not intended for therapeutic use.
These protocols are for reference only. InvivoChem does not independently validate these methods.
Physicochemical Properties
Molecular Formula
C9H7NO3
Molecular Weight
177.159
Exact Mass
177.043
CAS #
10328-92-4
PubChem CID
25160
Appearance
White to yellow solid powder
Density
1.348 g/cm3
Boiling Point
297.5ºC at 760 mmHg
Melting Point
165 °C (dec.)(lit.)
Flash Point
133.7ºC
Vapour Pressure
0.00135mmHg at 25°C
Index of Refraction
1.583
LogP
0.491
Hydrogen Bond Donor Count
0
Hydrogen Bond Acceptor Count
3
Rotatable Bond Count
0
Heavy Atom Count
13
Complexity
251
Defined Atom Stereocenter Count
0
SMILES
O=C(N(C)C1=CC=CC=C12)OC2=O
InChi Key
KJMRWDHBVCNLTQ-UHFFFAOYSA-N
InChi Code
InChI=1S/C9H7NO3/c1-10-7-5-3-2-4-6(7)8(11)13-9(10)12/h2-5H,1H3
Chemical Name
1-methyl-3,1-benzoxazine-2,4-dione
Synonyms
N-Methylisatoic Anhydride; NMIA
HS Tariff Code
2934.99.9001
Storage

Powder      -20°C    3 years

                     4°C     2 years

In solvent   -80°C    6 months

                  -20°C    1 month

Shipping Condition
Room temperature (This product is stable at ambient temperature for a few days during ordinary shipping and time spent in Customs)
Solubility Data
Solubility (In Vitro)
DMSO : ~100 mg/mL (~564.46 mM)
Solubility (In Vivo)
Solubility in Formulation 1: ≥ 2.5 mg/mL (14.11 mM) (saturation unknown) in 10% DMSO + 40% PEG300 + 5% Tween80 + 45% Saline (add these co-solvents sequentially from left to right, and one by one), clear solution.
For example, if 1 mL of working solution is to be prepared, you can add 100 μL of 25.0 mg/mL clear DMSO stock solution to 400 μL PEG300 and mix evenly; then add 50 μL Tween-80 to the above solution and mix evenly; then add 450 μL normal saline to adjust the volume to 1 mL.
Preparation of saline: Dissolve 0.9 g of sodium chloride in 100 mL ddH₂ O to obtain a clear solution.

Solubility in Formulation 2: ≥ 2.5 mg/mL (14.11 mM) (saturation unknown) in 10% DMSO + 90% Corn Oil (add these co-solvents sequentially from left to right, and one by one), clear solution.
For example, if 1 mL of working solution is to be prepared, you can add 100 μL of 25.0 mg/mL clear DMSO stock solution to 900 μL of corn oil and mix evenly.

 (Please use freshly prepared in vivo formulations for optimal results.)
Preparing Stock Solutions 1 mg 5 mg 10 mg
1 mM 5.6446 mL 28.2231 mL 56.4462 mL
5 mM 1.1289 mL 5.6446 mL 11.2892 mL
10 mM 0.5645 mL 2.8223 mL 5.6446 mL

*Note: Please select an appropriate solvent for the preparation of stock solution based on your experiment needs. For most products, DMSO can be used for preparing stock solutions (e.g. 5 mM, 10 mM, or 20 mM concentration); some products with high aqueous solubility may be dissolved in water directly. Solubility information is available at the above Solubility Data section. Once the stock solution is prepared, aliquot it to routine usage volumes and store at -20°C or -80°C. Avoid repeated freeze and thaw cycles.

Calculator

Molarity Calculator allows you to calculate the mass, volume, and/or concentration required for a solution, as detailed below:

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An example of molarity calculation using the molarity calculator is shown below:
What is the mass of compound required to make a 10 mM stock solution in 5 ml of DMSO given that the molecular weight of the compound is 350.26 g/mol?
  • Enter 350.26 in the Molecular Weight (MW) box
  • Enter 10 in the Concentration box and choose the correct unit (mM)
  • Enter 5 in the Volume box and choose the correct unit (mL)
  • Click the “Calculate” button
  • The answer of 17.513 mg appears in the Mass box. In a similar way, you may calculate the volume and concentration.

Dilution Calculator allows you to calculate how to dilute a stock solution of known concentrations. For example, you may Enter C1, C2 & V2 to calculate V1, as detailed below:

What volume of a given 10 mM stock solution is required to make 25 ml of a 25 μM solution?
Using the equation C1V1 = C2V2, where C1=10 mM, C2=25 μM, V2=25 ml and V1 is the unknown:
  • Enter 10 into the Concentration (Start) box and choose the correct unit (mM)
  • Enter 25 into the Concentration (End) box and select the correct unit (mM)
  • Enter 25 into the Volume (End) box and choose the correct unit (mL)
  • Click the “Calculate” button
  • The answer of 62.5 μL (0.1 ml) appears in the Volume (Start) box
g/mol

Molecular Weight Calculator allows you to calculate the molar mass and elemental composition of a compound, as detailed below:

Note: Chemical formula is case sensitive: C12H18N3O4  c12h18n3o4
Instructions to calculate molar mass (molecular weight) of a chemical compound:
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Definitions of molecular mass, molecular weight, molar mass and molar weight:
  • Molecular mass (or molecular weight) is the mass of one molecule of a substance and is expressed in the unified atomic mass units (u). (1 u is equal to 1/12 the mass of one atom of carbon-12)
  • Molar mass (molar weight) is the mass of one mole of a substance and is expressed in g/mol.
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Reconstitution Calculator allows you to calculate the volume of solvent required to reconstitute your vial.

  • Enter the mass of the reagent and the desired reconstitution concentration as well as the correct units
  • Click the “Calculate” button
  • The answer appears in the Volume (to add to vial) box
In vivo Formulation Calculator (Clear solution)
Step 1: Enter information below (Recommended: An additional animal to make allowance for loss during the experiment)
Step 2: Enter in vivo formulation (This is only a calculator, not the exact formulation for a specific product. Please contact us first if there is no in vivo formulation in the solubility section.)
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Calculation results

Working concentration mg/mL;

Method for preparing DMSO stock solution mg drug pre-dissolved in μL DMSO (stock solution concentration mg/mL). Please contact us first if the concentration exceeds the DMSO solubility of the batch of drug.

Method for preparing in vivo formulation:Take μL DMSO stock solution, next add μL PEG300, mix and clarify, next addμL Tween 80, mix and clarify, next add μL ddH2O,mix and clarify.

(1) Please be sure that the solution is clear before the addition of next solvent. Dissolution methods like vortex, ultrasound or warming and heat may be used to aid dissolving.
             (2) Be sure to add the solvent(s) in order.

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