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MS1943

Cat No.:V40191 Purity: ≥98%
MS1943 (MS-1943) is a novel and potent EZH2 degrader(IC50 = 120 nM) with anticancer activity.
MS1943
MS1943 Chemical Structure CAS No.: 2225938-17-8
Product category: Histone Methyltransferase
This product is for research use only, not for human use. We do not sell to patients.
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Product Description
MS1943 (MS-1943) is a novel and potent EZH2 degrader (IC50 = 120 nM) with anticancer activity. It significantly reduces EZH2 protein levels in numerous triple-negative breast cancer (TNBC) and other cancer and noncancerous cell lines.
MS1943 is a first-in-class, orally bioavailable selective EZH2 degrader. It effectively reduces EZH2 protein levels in many triple-negative breast cancer (TNBC) and other cancer cell lines, and inhibits EZH2 methyltransferase activity with an IC50 of 120 nM. MS1943 effectively blocks the proliferation of multiple TNBC and other cancer cell lines. It has a molecular weight of 718.93 g/mol and a molecular formula of C42H54N8O3.
Biological Activity I Assay Protocols (From Reference)
Targets
MS1943 targets EZH2 (enhancer of zeste homolog 2), a histone-lysine N-methyltransferase that is the catalytic subunit of the polycomb repressive complex 2 (PRC2). EZH2 methylates histone H3 at lysine 27 (H3K27me3), leading to transcriptional repression of target genes. MS1943 acts as a selective degrader, reducing EZH2 protein levels through targeted protein degradation.
ln Vitro
MS1943 (0.625-5 μM; 3 days) inhibits cell growth with a GI50 of 2.2 µM[1]. MDA-MB-468 cells are exposed to MS1943 (0.625-5 μM; 4 days), which causes cell death. The TNBC cells BT549, HCC70, and MDA-MB-231, the lymphoma cells KARPAS-422 and SUDHL8, and the non-cancerous prostate cells PNT2 all exhibit effective reductions in EZH2 levels when exposed to MS1943[1]. Without influencing EED protein levels, MS1943 (1.25-5.0 μM; 2 days) suppresses the H3K27me3 mark and inhibits EZH2 and SUZ12 protein levels in a concentration- and time-dependent manner[1].
In vitro, MS1943 effectively reduces EZH2 protein levels in many triple-negative breast cancer and other cancer cell lines. It inhibits EZH2 methyltransferase activity with an IC50 of 120 nM. MS1943 effectively blocks the proliferation of multiple TNBC and other cancer cell lines. Its mechanism of action involves selective degradation of EZH2.
ln Vivo
Tumor development is suppressed by MS1943 (150 mg/kg body weight; ip; once daily for 36 days)[1]. MS1943 causes the MDA-MB-468 xenograft model to undergo apoptosis[1]. A single intraperitoneal (i.p.) injection of MS1943 at a dose of 50 mg/kg body weight produced plasma concentrations above its cellular IC50 value for approximately two hours, with a peak plasma concentration (Cmax) of 2.9 µM. A single dose of 150 mg/kg body weight po produced a Cmax of 1.1 µM; however, the cellular IC50 value was not reached by the plasma concentrations[1].
In vivo, MS1943 is an orally bioavailable EZH2 selective degrader. As an orally bioavailable compound, it can be administered to animal models of cancer. Its ability to degrade EZH2 and inhibit tumor cell proliferation translates to in vivo efficacy. MS1943 has been studied in preclinical models of triple-negative breast cancer and other cancers.
Enzyme Assay
In vitro enzyme assays for MS1943 involve measuring its inhibition of EZH2 methyltransferase activity. Recombinant EZH2 is incubated with increasing concentrations of the compound, S-adenosylmethionine (SAM), and a peptide substrate. The methylation of histone H3 lysine 27 (H3K27me3) is measured by ELISA or by using radiolabeled SAM. IC50 values are calculated from dose-response curves.
Cell Assay
Cell Viability Assay[1]
Cell Types: MDA-MB-468 cells
Tested Concentrations: 0.625, 1.25, 2.5, 5 μM
Incubation Duration: 3 days
Experimental Results: Inhibits cell growth with an GI50 of 2.2 µM.
Western Blot Analysis[1]
Cell Types: MDA-MB-468 cells
Tested Concentrations: 1.25, 2.5, 5.0 µM
Incubation Duration: 2 days
Experimental Results: decreased EZH2 protein levels in a concentration- and time-dependent manner.
For in vitro cell-based assays, cancer cell lines (e.g., TNBC cells) are cultured and treated with MS1943 at various concentrations. EZH2 protein levels are measured by Western blot. H3K27me3 levels are assessed by Western blot or ELISA. Cell proliferation is assessed by MTT or CellTiter-Glo assays. Cell cycle analysis and apoptosis are evaluated by flow cytometry.
Animal Protocol
Animal/Disease Models: Eightweeks old female BALB/c nude mice (MDA-MB-468 xenografts)[1]
Doses: 150 mg/kg body weight
Route of Administration: ip; one time/day for 36 days
Experimental Results: Suppresses tumor growth.
In vivo animal studies with MS1943 are conducted in mouse xenograft models of cancer. Tumor-bearing mice are treated with the compound orally at doses determined from pharmacokinetic studies. Tumor growth inhibition is monitored. At study endpoint, tumors are excised for histopathological and molecular analyses. EZH2 and H3K27me3 levels in tumors are measured by Western blot or immunohistochemistry.
ADME/Pharmacokinetics
MS1943 (CAS: 2225938-17-8) has a molecular weight of 718.93 g/mol and a molecular formula of C42H54N8O3. Appearance: solid powder. Purity: ≥98%. Solubility: DMSO. Storage: powder at -20°C. The compound is a first-in-class, orally bioavailable EZH2 selective degrader.
Toxicity/Toxicokinetics
MS1943 is a research compound and is not approved for human therapeutic use. In preclinical studies, it has shown a manageable safety profile. As an EZH2 degrader, it may affect normal cellular processes regulated by PRC2. The compound's selectivity for EZH2 over other proteins may reduce off-target effects. Standard laboratory safety precautions should be followed when handling the compound.
References

[1]. Discovery of a first-in-class EZH2 selective degrader.Nat Chem Biol. 2020 Feb;16(2):214-222.

Additional Infomation
MS1943 is a first-in-class, orally bioavailable selective EZH2 degrader. It effectively reduces EZH2 protein levels in many triple-negative breast cancer and other cancer cell lines, and inhibits EZH2 methyltransferase activity with an IC50 of 120 nM. It has a molecular weight of 718.93 g/mol and a molecular formula of C42H54N8O3. It is not FDA-approved and is intended for research use only.
These protocols are for reference only. InvivoChem does not independently validate these methods.
Physicochemical Properties
Molecular Formula
C42H54N8O3
Molecular Weight
718.9300
Exact Mass
718.431
CAS #
2225938-17-8
PubChem CID
139211327
Appearance
Light yellow to yellow solid powder
LogP
5.7
Hydrogen Bond Donor Count
3
Hydrogen Bond Acceptor Count
7
Rotatable Bond Count
11
Heavy Atom Count
53
Complexity
1410
Defined Atom Stereocenter Count
0
SMILES
O=C(C([H])([H])C12C([H])([H])C3([H])C([H])([H])C([H])(C([H])([H])C([H])(C3([H])[H])C1([H])[H])C2([H])[H])N([H])C([H])([H])C([H])([H])N1C([H])([H])C([H])([H])N(C2C([H])=C([H])C(C3=C([H])C(C(N([H])C([H])([H])C4C(N([H])C(C([H])([H])[H])=C([H])C=4C([H])([H])[H])=O)=O)=C4C([H])=NN(C([H])(C([H])([H])[H])C([H])([H])[H])C4=C3[H])=C([H])N=2)C([H])([H])C1([H])[H]
InChi Key
WQIQJFXBAJJKNT-UHFFFAOYSA-N
InChi Code
InChI=1S/C42H54N8O3/c1-26(2)50-37-18-33(17-34(36(37)25-46-50)40(52)45-24-35-27(3)13-28(4)47-41(35)53)32-5-6-38(44-23-32)49-11-9-48(10-12-49)8-7-43-39(51)22-42-19-29-14-30(20-42)16-31(15-29)21-42/h5-6,13,17-18,23,25-26,29-31H,7-12,14-16,19-22,24H2,1-4H3,(H,43,51)(H,45,52)(H,47,53)
Chemical Name
6-[6-[4-[2-[[2-(1-adamantyl)acetyl]amino]ethyl]piperazin-1-yl]pyridin-3-yl]-N-[(4,6-dimethyl-2-oxo-1H-pyridin-3-yl)methyl]-1-propan-2-ylindazole-4-carboxamide
HS Tariff Code
2934.99.9001
Storage

Powder      -20°C    3 years

                     4°C     2 years

In solvent   -80°C    6 months

                  -20°C    1 month

Shipping Condition
Room temperature (This product is stable at ambient temperature for a few days during ordinary shipping and time spent in Customs)
Solubility Data
Solubility (In Vitro)
DMSO : ~125 mg/mL (~173.87 mM)
Solubility (In Vivo)
Solubility in Formulation 1: ≥ 6.25 mg/mL (8.69 mM) (saturation unknown) in 10% DMSO + 40% PEG300 + 5% Tween80 + 45% Saline (add these co-solvents sequentially from left to right, and one by one), clear solution.
For example, if 1 mL of working solution is to be prepared, you can add 100 μL of 62.5 mg/mL clear DMSO stock solution to 400 μL PEG300 and mix evenly; then add 50 μL Tween-80 to the above solution and mix evenly; then add 450 μL normal saline to adjust the volume to 1 mL.
Preparation of saline: Dissolve 0.9 g of sodium chloride in 100 mL ddH₂ O to obtain a clear solution.

Solubility in Formulation 2: ≥ 6.25 mg/mL (8.69 mM) (saturation unknown) in 10% DMSO + 90% (20% SBE-β-CD in Saline) (add these co-solvents sequentially from left to right, and one by one), clear solution.
For example, if 1 mL of working solution is to be prepared, you can add 100 μL of 62.5 mg/mL clear DMSO stock solution to 900 μL of 20% SBE-β-CD physiological saline solution and mix evenly.
Preparation of 20% SBE-β-CD in Saline (4°C,1 week): Dissolve 2 g SBE-β-CD in 10 mL saline to obtain a clear solution.

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Solubility in Formulation 3: ≥ 6.25 mg/mL (8.69 mM) (saturation unknown) in 10% DMSO + 90% Corn Oil (add these co-solvents sequentially from left to right, and one by one), clear solution.
For example, if 1 mL of working solution is to be prepared, you can add 100 μL of 62.5 mg/mL clear DMSO stock solution to 900 μL corn oil and mix evenly.


 (Please use freshly prepared in vivo formulations for optimal results.)
Preparing Stock Solutions 1 mg 5 mg 10 mg
1 mM 1.3910 mL 6.9548 mL 13.9096 mL
5 mM 0.2782 mL 1.3910 mL 2.7819 mL
10 mM 0.1391 mL 0.6955 mL 1.3910 mL

*Note: Please select an appropriate solvent for the preparation of stock solution based on your experiment needs. For most products, DMSO can be used for preparing stock solutions (e.g. 5 mM, 10 mM, or 20 mM concentration); some products with high aqueous solubility may be dissolved in water directly. Solubility information is available at the above Solubility Data section. Once the stock solution is prepared, aliquot it to routine usage volumes and store at -20°C or -80°C. Avoid repeated freeze and thaw cycles.

Calculator

Molarity Calculator allows you to calculate the mass, volume, and/or concentration required for a solution, as detailed below:

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An example of molarity calculation using the molarity calculator is shown below:
What is the mass of compound required to make a 10 mM stock solution in 5 ml of DMSO given that the molecular weight of the compound is 350.26 g/mol?
  • Enter 350.26 in the Molecular Weight (MW) box
  • Enter 10 in the Concentration box and choose the correct unit (mM)
  • Enter 5 in the Volume box and choose the correct unit (mL)
  • Click the “Calculate” button
  • The answer of 17.513 mg appears in the Mass box. In a similar way, you may calculate the volume and concentration.

Dilution Calculator allows you to calculate how to dilute a stock solution of known concentrations. For example, you may Enter C1, C2 & V2 to calculate V1, as detailed below:

What volume of a given 10 mM stock solution is required to make 25 ml of a 25 μM solution?
Using the equation C1V1 = C2V2, where C1=10 mM, C2=25 μM, V2=25 ml and V1 is the unknown:
  • Enter 10 into the Concentration (Start) box and choose the correct unit (mM)
  • Enter 25 into the Concentration (End) box and select the correct unit (mM)
  • Enter 25 into the Volume (End) box and choose the correct unit (mL)
  • Click the “Calculate” button
  • The answer of 62.5 μL (0.1 ml) appears in the Volume (Start) box
g/mol

Molecular Weight Calculator allows you to calculate the molar mass and elemental composition of a compound, as detailed below:

Note: Chemical formula is case sensitive: C12H18N3O4  c12h18n3o4
Instructions to calculate molar mass (molecular weight) of a chemical compound:
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Definitions of molecular mass, molecular weight, molar mass and molar weight:
  • Molecular mass (or molecular weight) is the mass of one molecule of a substance and is expressed in the unified atomic mass units (u). (1 u is equal to 1/12 the mass of one atom of carbon-12)
  • Molar mass (molar weight) is the mass of one mole of a substance and is expressed in g/mol.
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Reconstitution Calculator allows you to calculate the volume of solvent required to reconstitute your vial.

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In vivo Formulation Calculator (Clear solution)
Step 1: Enter information below (Recommended: An additional animal to make allowance for loss during the experiment)
Step 2: Enter in vivo formulation (This is only a calculator, not the exact formulation for a specific product. Please contact us first if there is no in vivo formulation in the solubility section.)
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Calculation results

Working concentration mg/mL;

Method for preparing DMSO stock solution mg drug pre-dissolved in μL DMSO (stock solution concentration mg/mL). Please contact us first if the concentration exceeds the DMSO solubility of the batch of drug.

Method for preparing in vivo formulation:Take μL DMSO stock solution, next add μL PEG300, mix and clarify, next addμL Tween 80, mix and clarify, next add μL ddH2O,mix and clarify.

(1) Please be sure that the solution is clear before the addition of next solvent. Dissolution methods like vortex, ultrasound or warming and heat may be used to aid dissolving.
             (2) Be sure to add the solvent(s) in order.

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