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KJ-Pyr-9

Alias: KJ Pyr-9; KJPyr-9; KJ-Pyr-9
Cat No.:V23251 Purity: ≥98%
KJ Pyr 9 is an inhibitor (blocker/antagonist) of MYC.
KJ-Pyr-9
KJ-Pyr-9 Chemical Structure CAS No.: 581073-80-5
Product category: New1
This product is for research use only, not for human use. We do not sell to patients.
Size Price Stock Qty
5mg
10mg
50mg
100mg
250mg
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Product Description
KJ Pyr 9 is an inhibitor (blocker/antagonist) of MYC. In in vitro experiments, KJ Pyr 9 inhibited MYC with Kd of 6.5±1.0 nM.
KJ-Pyr-9 (KJ Pyr 9) is a novel small molecule inhibitor of MYC that suppresses the formation of MYC-MAX heterodimers and oncogenic transformation induced by MYC in cell culture. It binds to MYC with high affinity. KJ-Pyr-9 inhibits the proliferation of cancer cell lines with constitutively high c-MYC expression. The compound is a MYC inhibitor for cancer research.
Biological Activity I Assay Protocols (From Reference)
Targets
MYC (c-MYC) oncoprotein. KJ-Pyr-9 suppresses the formation of MYC-MAX heterodimers. The compound inhibits MYC-driven oncogenic transformation. MYC is a transcription factor that regulates cell proliferation, growth, and apoptosis.
ln Vitro
In protein fragment complementation tests, KJ Pyr 9 (KJ-Pyr-9) induces disruptions in the MYC-MAX complex in cells [1]. KJ Pyr 9 had little influence on the food activity of a few unrelated oncoproteins and only mild effects on MYC-induced inducible transformation in suspension in cells [1]. MYC-overexpressing human and avian cell proliferation is preferentially inhibited by KJ Pyr 9, which also dramatically lowers the MYC-driven opsonic signature [1]. Increased MYC activity is required for KJ Pyr 9's recognized effects on the clear cell lines NCI-H460, MDA-MB-231, and SUM-159PT [1]. All cell lines having IC50 values between 5 and 10 μM are included in KJpyr 9. Burkitt cell lines with constitutively high c-MYC expression (IC50 values between 1 and 2.5 μM) are more sensitive to KJ Pyr 9 proliferation [1].
KJ-Pyr-9 binds to MYC with a Kd value of 6.5 ± 1.0 nM as determined by back-scattering interferometry. It inhibits the proliferation of all cell lines with IC50 values between 5 and 10 µM. Burkitt lymphoma cell lines with constitutively high c-MYC expression show greater sensitivity with IC50 values between 1 and 2.5 µM.
ln Vivo
Growth inhibition is a property of KJ Pyr 9 (intraperitoneal injection; 10 mg/kg; once day for 31 tumor days) [1].
No detailed in vivo activity data has been published in the available literature. KJ-Pyr-9 is primarily characterized as an in vitro tool for studying MYC function. Further in vivo studies in xenograft tumor models would be needed to evaluate its anti-tumor efficacy, pharmacokinetics, and pharmacodynamics.
Enzyme Assay
MYC-MAX binding assay: MYC and MAX proteins (or their bHLH-LZ domains) are incubated with varying concentrations of KJ-Pyr-9 in binding buffer. The interaction is measured by back-scattering interferometry, surface plasmon resonance, or fluorescence polarization. Kd values are calculated from binding curves.
Cell Assay
Cell proliferation assay: Cancer cell lines (including Burkitt lymphoma and other cancer cell lines) are seeded in 96-well plates and treated with KJ-Pyr-9 at varying concentrations (0.1-50 µM) for 48-72 hours. Cell viability is measured using MTT, CellTiter-Glo, or counting of viable cells. IC50 values are calculated from dose-response curves.
Animal Protocol
No in vivo animal experimental protocols have been published for KJ-Pyr-9 in the available literature. In vivo studies would typically involve xenograft tumor models in immunocompromised mice bearing MYC-driven tumors. KJ-Pyr-9 would be administered via intraperitoneal or intravenous routes, followed by tumor volume measurement, survival analysis, and histopathological evaluation.
ADME/Pharmacokinetics
No pharmacokinetic data has been published in the available literature. KJ-Pyr-9 has a molecular formula and weight consistent with small-molecule MYC inhibitors. Comprehensive PK parameters such as bioavailability, half-life, and plasma protein binding remain to be characterized. The compound is soluble in DMSO.
Toxicity/Toxicokinetics
No toxicity data has been published in the available literature. KJ-Pyr-9 is for research use only. Standard laboratory safety practices should be followed when handling this compound. As a MYC inhibitor, potential effects on normal cell proliferation should be considered.
References

[1]. Inhibitor of MYC identified in a Kröhnke pyridine library. Proc Natl Acad Sci U S A. 2014 Aug 26;111(34):12556-61.

Additional Infomation
KJ-Pyr-9 is a small molecule MYC inhibitor that binds to MYC with a Kd of 6.5 ± 1.0 nM and suppresses MYC-MAX heterodimer formation. It inhibits oncogenic transformation induced by MYC in cell culture. Burkitt lymphoma cells with high c-MYC expression show IC50 values of 1-2.5 µM. No clinical trials or approved上市 status have been reported.
These protocols are for reference only. InvivoChem does not independently validate these methods.
Physicochemical Properties
Molecular Formula
C22H15N3O4
Molecular Weight
385.379
Exact Mass
385.106
CAS #
581073-80-5
PubChem CID
85855478
Appearance
Light yellow to yellow solid powder
Density
1.3±0.1 g/cm3
Boiling Point
584.4±50.0 °C at 760 mmHg
Flash Point
307.2±30.1 °C
Vapour Pressure
0.0±1.6 mmHg at 25°C
Index of Refraction
1.646
LogP
4.48
Hydrogen Bond Donor Count
1
Hydrogen Bond Acceptor Count
5
Rotatable Bond Count
4
Heavy Atom Count
29
Complexity
579
Defined Atom Stereocenter Count
0
SMILES
C1=COC(=C1)C2=CC(=CC(=N2)C3=CC=C(C=C3)[N+](=O)[O-])C4=CC=C(C=C4)C(=O)N
InChi Key
GTTDVYCKFQYVNN-UHFFFAOYSA-N
InChi Code
InChI=1S/C22H15N3O4/c23-22(26)16-5-3-14(4-6-16)17-12-19(15-7-9-18(10-8-15)25(27)28)24-20(13-17)21-2-1-11-29-21/h1-13H,(H2,23,26)
Chemical Name
4-[2-(furan-2-yl)-6-(4-nitrophenyl)pyridin-4-yl]benzamide
Synonyms
KJ Pyr-9; KJPyr-9; KJ-Pyr-9
HS Tariff Code
2934.99.9001
Storage

Powder      -20°C    3 years

                     4°C     2 years

In solvent   -80°C    6 months

                  -20°C    1 month

Shipping Condition
Room temperature (This product is stable at ambient temperature for a few days during ordinary shipping and time spent in Customs)
Solubility Data
Solubility (In Vitro)
DMSO : ~125 mg/mL (~324.36 mM)
Solubility (In Vivo)
Solubility in Formulation 1: 2.5 mg/mL (6.49 mM) in 10% DMSO + 90% (20% SBE-β-CD in Saline) (add these co-solvents sequentially from left to right, and one by one), suspension solution; with sonication.
For example, if 1 mL of working solution is to be prepared, you can add 100 μL of 25.0 mg/mL clear DMSO stock solution to 900 μL of 20% SBE-β-CD physiological saline solution and mix evenly.
Preparation of 20% SBE-β-CD in Saline (4°C,1 week): Dissolve 2 g SBE-β-CD in 10 mL saline to obtain a clear solution.

Solubility in Formulation 2: ≥ 2.5 mg/mL (6.49 mM) (saturation unknown) in 10% DMSO + 90% Corn Oil (add these co-solvents sequentially from left to right, and one by one), clear solution.
For example, if 1 mL of working solution is to be prepared, you can add 100 μL of 25.0 mg/mL clear DMSO stock solution to 900 μL of corn oil and mix evenly.

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Solubility in Formulation 3: 2.08 mg/mL (5.40 mM) in 10% DMSO + 40% PEG300 + 5% Tween80 + 45% Saline (add these co-solvents sequentially from left to right, and one by one), suspension solution; with ultrasonication.
For example, if 1 mL of working solution is to be prepared, you can add 100 μL of 20.8 mg/mL clear DMSO stock solution to 400 μL PEG300 and mix evenly; then add 50 μL Tween-80 to the above solution and mix evenly; then add 450 μL normal saline to adjust the volume to 1 mL.
Preparation of saline: Dissolve 0.9 g of sodium chloride in 100 mL ddH₂ O to obtain a clear solution.


 (Please use freshly prepared in vivo formulations for optimal results.)
Preparing Stock Solutions 1 mg 5 mg 10 mg
1 mM 2.5948 mL 12.9742 mL 25.9484 mL
5 mM 0.5190 mL 2.5948 mL 5.1897 mL
10 mM 0.2595 mL 1.2974 mL 2.5948 mL

*Note: Please select an appropriate solvent for the preparation of stock solution based on your experiment needs. For most products, DMSO can be used for preparing stock solutions (e.g. 5 mM, 10 mM, or 20 mM concentration); some products with high aqueous solubility may be dissolved in water directly. Solubility information is available at the above Solubility Data section. Once the stock solution is prepared, aliquot it to routine usage volumes and store at -20°C or -80°C. Avoid repeated freeze and thaw cycles.

Calculator

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An example of molarity calculation using the molarity calculator is shown below:
What is the mass of compound required to make a 10 mM stock solution in 5 ml of DMSO given that the molecular weight of the compound is 350.26 g/mol?
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  • The answer of 17.513 mg appears in the Mass box. In a similar way, you may calculate the volume and concentration.

Dilution Calculator allows you to calculate how to dilute a stock solution of known concentrations. For example, you may Enter C1, C2 & V2 to calculate V1, as detailed below:

What volume of a given 10 mM stock solution is required to make 25 ml of a 25 μM solution?
Using the equation C1V1 = C2V2, where C1=10 mM, C2=25 μM, V2=25 ml and V1 is the unknown:
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  • The answer of 62.5 μL (0.1 ml) appears in the Volume (Start) box
g/mol

Molecular Weight Calculator allows you to calculate the molar mass and elemental composition of a compound, as detailed below:

Note: Chemical formula is case sensitive: C12H18N3O4  c12h18n3o4
Instructions to calculate molar mass (molecular weight) of a chemical compound:
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Definitions of molecular mass, molecular weight, molar mass and molar weight:
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In vivo Formulation Calculator (Clear solution)
Step 1: Enter information below (Recommended: An additional animal to make allowance for loss during the experiment)
Step 2: Enter in vivo formulation (This is only a calculator, not the exact formulation for a specific product. Please contact us first if there is no in vivo formulation in the solubility section.)
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Calculation results

Working concentration mg/mL;

Method for preparing DMSO stock solution mg drug pre-dissolved in μL DMSO (stock solution concentration mg/mL). Please contact us first if the concentration exceeds the DMSO solubility of the batch of drug.

Method for preparing in vivo formulation:Take μL DMSO stock solution, next add μL PEG300, mix and clarify, next addμL Tween 80, mix and clarify, next add μL ddH2O,mix and clarify.

(1) Please be sure that the solution is clear before the addition of next solvent. Dissolution methods like vortex, ultrasound or warming and heat may be used to aid dissolving.
             (2) Be sure to add the solvent(s) in order.

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